Chemistry of the Interaction and Retention of TcVII and TcIV Species at the Fe3O4(001) Surface.

The pertechnetate ion TcVIIO4 - is a nuclear fission product whose major issue is the high mobility in the environment. Experimentally, it is well known that Fe3O4 can reduce TcVIIO4 - to TcIV species and retain such products quickly and completely, but the exact nature of the redox process and products is not completely understood. Therefore, we investigated the chemistry of TcVIIO4 - and TcIV species at the Fe3O4(001) surface through a hybrid DFT functional (HSE06) method. We studied a possible initiation step of the TcVII reduction process. The interaction of the TcVIIO4 - ion with the magnetite surface leads to the formation of a reduced TcVI species without any change in the Tc coordination sphere through an electron transfer that is favored by the magnetite surfaces with a higher FeII content. Furthermore, we explored various model structures for the immobilized TcIV final products. TcIV can be incorporated into a subsurface octahedral site or adsorbed on the surface in the form of TcIVO2·xH2O chains. We propose and discuss three model structures for the adsorbed TcIVO2·2H2O chains in terms of relative energies and simulated EXAFS spectra. Our results suggest that the periodicity of the Fe3O4(001) surface matches that of the TcO2·2H2O chains. The EXAFS analysis suggests that, in experiments, TcO2·xH2O chains were probably not formed as an inner-shell adsorption complex with the Fe3O4(001) surface.

Shedding Light on the Enigmatic TcO2 ⋠xH2 O Structure with Density Functional Theory and EXAFS Spectroscopy.

The ß-emitting 99 Tc isotope is a high-yield fission product in 235 U and 239 Pu nuclear reactors, raising special concern in nuclear waste management due to its long half-life and the high mobility of pertechnetate (TcO4 - ). Under the conditions of deep nuclear waste repositories, Tc is retained through biotic and abiotic reduction of TcO4 - to compounds like amorphous TcO2 ⋅ xH2 O precipitates. It is generally accepted that these precipitates have linear (Tc(µ-O)2 (H2 O)2 )n chains, with trans H2 O. Although corresponding Tc-Tc and Tc-O distances have been obtained from extended X-ray absorption fine structure (EXAFS) spectroscopy, this structure is largely based on analogy with other compounds. Here, we combine density-functional theory with EXAFS measurements of fresh and aged samples to show that, instead, TcO2 ⋅ xH2 O forms zigzag chains that undergo a slow aging process whereby they combine to form longer chains and, later, a tridimensional structure that might lead to a new TcO2 polymorph.

Stone-Wales Defects Cause High Proton Permeability and Isotope Selectivity of Single-Layer Graphene.

While the isotope-dependent hydrogen permeability of graphene membranes at ambient condition has been demonstrated, the underlying mechanism has been controversially discussed during the past 5 years. The reported room-temperature proton-over-deuteron (H+ -over-D+ ) selectivity is 10, much higher than in any competing method. Yet, it has not been understood how protons can penetrate through graphene membranes-proposed hypotheses include atomic defects and local hydrogenation. However, neither can explain both the high permeability and high selectivity of the atomically thin membranes. Here, it is confirmed that ideal graphene is quasi-impermeable to protons, yet the most common defect in sp2 carbons, the topological Stone-Wales defect, has a calculated penetration barrier below 1 eV and H+ -over-D+ selectivity of  7 at room temperature and, thus, explains all experimental results on graphene membranes that are available to date. The competing explanation, local hydrogenation, which also reduces the penetration barrier, but shows significantly lower isotope selectivity, is challenged.

DFTB Parameters for the Periodic Table, Part 2: Energies and Energy Gradients from Hydrogen to Calcium.

In the first part of this series, we presented a parametrization strategy to obtain high-quality electronic band structures on the basis of density-functional-based tight-binding (DFTB) calculations and published a parameter set called QUASINANO2013.1. Here, we extend our parametrization effort to include the remaining terms that are needed to compute the total energy and its gradient, commonly referred to as repulsive potential. Instead of parametrizing these terms as a two-body potential, we calculate them explicitly from the DFTB analogues of the Kohn-Sham total energy expression. This strategy requires only two further numerical parameters per element. Thus, the atomic configuration and four real numbers per element are sufficient to define the DFTB model at this level of parametrization. The QUASINANO2015 parameter set allows the calculation of energy, structure, and electronic structure of all systems composed of elements ranging from H to Ca. Extensive benchmarks show that the overall accuracy of QUASINANO2015 is comparable to that of well-established methods, including PM7 and hand-tuned DFTB parameter sets, while coverage of a much larger range of chemical systems is available.

Electromechanics in MoS2 and WS2: nanotubes vs. monolayers.

The transition-metal dichalcogenides (TMD) MoS2 and WS2 show remarkable electromechanical properties. Strain modifies the direct band gap into an indirect one, and substantial strain even induces an semiconductor-metal transition. Providing strain through mechanical contacts is difficult for TMD monolayers, but state-of-the-art for TMD nanotubes. We show using density-functional theory that similar electromechanical properties as in monolayer and bulk TMDs are found for large diameter TMD single- (SWNT) and multi-walled nanotubes (MWNTs). The semiconductor-metal transition occurs at elongations of 16%. We show that Raman signals of the in-plane and out-of-plane lattice vibrations depend significantly and linearly on the strain, showing that Raman spectroscopy is an excellent tool to determine the strain of the individual nanotubes and hence monitor the progress of nanoelectromechanical experiments in situ. TMD MWNTs show twice the electric conductance compared to SWNTs, and each wall of the MWNTs contributes to the conductance proportional to its diameter.

DFTB Parameters for the Periodic Table: Part 1, Electronic Structure.

A parametrization scheme for the electronic part of the density-functional based tight-binding (DFTB) method that covers the periodic table is presented. A semiautomatic parametrization scheme has been developed that uses Kohn-Sham energies and band structure curvatures of real and fictitious homoatomic crystal structures as reference data. A confinement potential is used to tighten the Kohn-Sham orbitals, which includes two free parameters that are used to optimize the performance of the method. The method is tested on more than 100 systems and shows excellent overall performance.

Conformational analysis of aqueous BMP-2 using atomistic molecular dynamics simulations.

BMP-2 is an osteoinductive protein, involved in the differentiation and proliferation of osteoblasts, with potential application as bioactive agent in bone implants and scaffolds. Since the three-dimensional structure of a protein usually determines its bioactivity, in order to efficiently design bone implants activated with BMP-2 it is essential to identify the factors influencing the protein conformation. In the present work, atomistic molecular dynamics simulations are employed to investigate the BMP-2 monomer and homodimer in vacuum and water. The influence of each environment on the BMP-2 structure is analyzed regarding protein structural changes and energy contributions driving the BMP-2 conformation.