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1.
Biology (Basel) ; 8(3)2019 Jul 31.
Article in English | MEDLINE | ID: mdl-31370146

ABSTRACT

While it is now understood that the proper expansion of adipose tissue is critically important for metabolic homeostasis, it is also appreciated that adipose tissues perform far more functions than simply maintaining energy balance. Adipose tissue performs endocrine functions, secreting hormones or adipokines that affect the regulation of extra-adipose tissues, and, under certain conditions, can also be major contributors to energy expenditure and the systemic metabolic rate via the activation of thermogenesis. Adipose thermogenesis takes place in brown and beige adipocytes. While brown adipocytes have been relatively well studied, the study of beige adipocytes has only recently become an area of considerable exploration. Numerous suggestions have been made that beige adipocytes can elicit beneficial metabolic effects on body weight, insulin sensitivity, and lipid levels. However, the potential impact of beige adipocyte thermogenesis on systemic metabolism is not yet clear and an understanding of beige adipocyte development and regulation is also limited. This review will highlight our current understanding of beige adipocytes and select factors that have been reported to elicit the development and activation of thermogenesis in beige cells, with a focus on factors that may represent a link between exercise and 'beiging', as well as the role that thyroid hormone signaling plays in beige adipocyte regulation.

2.
JCI Insight ; 52019 07 02.
Article in English | MEDLINE | ID: mdl-31265437

ABSTRACT

Hormones produced by the anterior pituitary gland regulate an array of important physiological functions, but pituitary hormone disorders are not fully understood. Herein we report that genetically-engineered mice with deletion of the hedgehog signaling receptor Patched1 by S100a4 promoter-driven Cre recombinase (S100a4-Cre;Ptch1fl/fl mutants) exhibit adult-onset hypogonadotropic hypogonadism and multiple pituitary hormone disorders. During the transition from puberty to adult, S100a4-Cre;Ptch1fl/fl mice of both sexes develop hypogonadism coupled with reduced gonadotropin levels. Their pituitary glands also display severe structural and functional abnormalities, as revealed by transmission electron microscopy and expression of key genes regulating pituitary endocrine functions. S100a4-Cre activity in the anterior pituitary gland is restricted to CD45+ cells of hematopoietic origin, including folliculo-stellate cells and other immune cell types, causing sex-specific changes in the expression of genes regulating the local microenvironment of the anterior pituitary. These findings provide in vivo evidence for the importance of pituitary hematopoietic cells in regulating fertility and endocrine function, in particular during sexual maturation and likely through sexually dimorphic mechanisms. These findings support a previously unrecognized role of hematopoietic cells in causing hypogonadotropic hypogonadism and provide inroads into the molecular and cellular basis for pituitary hormone disorders in humans.


Subject(s)
Hypogonadism/metabolism , Integrases/metabolism , Patched-1 Receptor/metabolism , Pituitary Gland/metabolism , S100 Calcium-Binding Protein A4/metabolism , Animals , Epididymis/pathology , Female , Humans , Hypogonadism/genetics , Hypogonadism/pathology , Male , Mice , Mice, Knockout , Ovary/pathology , Patched-1 Receptor/genetics , Pituitary Gland, Anterior/metabolism , Reproduction/physiology , Seminal Vesicles/pathology , Sexual Maturation , Signal Transduction , Testis , Testosterone/blood , Uterus/pathology
3.
Curr Protoc Mol Biol ; 125(1): e78, 2019 01.
Article in English | MEDLINE | ID: mdl-30371021

ABSTRACT

Differential Scanning Fluorimetry Guided Refolding (DGR) is a simple methodology that can be used to rapidly screen for and identify conditions capable of accurately refolding protein preparations, such as those obtained from Escherichia coli inclusion bodies. It allows for the production in E. coli of functional proteins that would otherwise require far more expensive production methods. This unit describes how to set up a DGR refolding assay, perform DGR refolding trials in microplate format, use MeltTraceur Web software to interactively analyze the resulting data, scale-up protein production via refolding, and lastly, validate that the protein is properly folded. © 2018 by John Wiley & Sons, Inc.


Subject(s)
Biochemistry/methods , Chromatography, Gel/methods , Escherichia coli Proteins/chemistry , Escherichia coli/metabolism , Fluorometry/methods , Inclusion Bodies/metabolism , Protein Refolding , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Inclusion Bodies/chemistry , Inclusion Bodies/genetics
4.
Nat Med ; 23(12): 1444-1453, 2017 Dec.
Article in English | MEDLINE | ID: mdl-29106398

ABSTRACT

Asprosin is a recently discovered fasting-induced hormone that promotes hepatic glucose production. Here we demonstrate that asprosin in the circulation crosses the blood-brain barrier and directly activates orexigenic AgRP+ neurons via a cAMP-dependent pathway. This signaling results in inhibition of downstream anorexigenic proopiomelanocortin (POMC)-positive neurons in a GABA-dependent manner, which then leads to appetite stimulation and a drive to accumulate adiposity and body weight. In humans, a genetic deficiency in asprosin causes a syndrome characterized by low appetite and extreme leanness; this is phenocopied by mice carrying similar mutations and can be fully rescued by asprosin. Furthermore, we found that obese humans and mice had pathologically elevated concentrations of circulating asprosin, and neutralization of asprosin in the blood with a monoclonal antibody reduced appetite and body weight in obese mice, in addition to improving their glycemic profile. Thus, in addition to performing a glucogenic function, asprosin is a centrally acting orexigenic hormone that is a potential therapeutic target in the treatment of both obesity and diabetes.


Subject(s)
Appetite Regulation/genetics , Hypothalamus/metabolism , Microfilament Proteins/physiology , Peptide Fragments/physiology , Peptide Hormones/physiology , Adolescent , Adult , Animals , Appetite Depressants/metabolism , Female , Fibrillin-1 , Humans , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Microfilament Proteins/genetics , Neurons/metabolism , Peptide Fragments/genetics , Peptide Hormones/genetics , Rats , Signal Transduction , Young Adult
5.
Sci Rep ; 6: 18906, 2016 Jan 19.
Article in English | MEDLINE | ID: mdl-26783150

ABSTRACT

The Anfinsen hypothesis, the demonstration of which led to the Nobel prize in Chemistry, posits that all information required to determine a proteins' three dimensional structure is contained within its amino acid sequence. This suggests that it should be possible, in theory, to fold any protein in vitro. In practice, however, protein production by refolding is challenging because suitable refolding conditions must be empirically determined for each protein and can be painstaking. Here we demonstrate, using a variety of proteins, that differential scanning fluorimetry (DSF) can be used to determine and optimize conditions that favor proper protein folding in a rapid and high-throughput fashion. The resulting method, which we deem DSF guided refolding (DGR), thus enables the production of aggregation-prone and disulfide-containing proteins by refolding from E. coli inclusion bodies, which would not normally be amenable to production in bacteria.


Subject(s)
Amino Acids/chemistry , Escherichia coli/chemistry , Protein Folding , Proteins/chemistry , Amino Acid Sequence/genetics , Amino Acids/genetics , Disulfides/chemistry , Escherichia coli/genetics , Fluorometry , Inclusion Bodies/chemistry , Proteins/genetics
6.
Cell Rep ; 13(8): 1528-37, 2015 Nov 24.
Article in English | MEDLINE | ID: mdl-26586443

ABSTRACT

The functional conversion of white adipose tissue (WAT) into a tissue with brown adipose tissue (BAT)-like activity, often referred to as "browning," represents an intriguing strategy for combating obesity and metabolic disease. We demonstrate that thyroid hormone receptor (TR) activation by a synthetic agonist markedly induces a program of adaptive thermogenesis in subcutaneous WAT that coincides with a restoration of cold tolerance to cold-intolerant mice. Distinct from most other browning agents, pharmacological TR activation dissociates the browning of WAT from activation of classical BAT. TR agonism also induces the browning of white adipocytes in vitro, indicating that TR-mediated browning is cell autonomous. These data establish TR agonists as a class of browning agents, implicate the TRs in the browning of WAT, and suggest a profound pharmacological potential of this action.


Subject(s)
Adipose Tissue, Brown/metabolism , Adipose Tissue, White/metabolism , Receptors, Thyroid Hormone/metabolism , Adipocytes, Brown/metabolism , Adipocytes, White/metabolism , Animals , Energy Metabolism/physiology , Mice , Mice, Inbred C57BL , Obesity/metabolism , Thermogenesis/physiology
7.
PLoS One ; 10(4): e0122987, 2015.
Article in English | MEDLINE | ID: mdl-25849936

ABSTRACT

Thyroid hormone receptor (TR) agonists have been proposed as therapeutic agents to treat non-alcoholic fatty liver disease (NAFLD) and insulin resistance. We investigated the ability of the TR agonists GC-1 and KB2115 to reduce hepatic steatosis in ob/ob mice. Both compounds markedly reduced hepatic triglyceride levels and ameliorated hepatic steatosis. However, the amelioration of fatty liver was not sufficient to improve insulin sensitivity in these mice and reductions in hepatic triglycerides did not correlate with improvements in insulin sensitivity or glycemic control. Instead, the effects of TR activation on glycemia varied widely and were found to depend upon the time of treatment as well as the compound and dosage used. Lower doses of GC-1 were found to further impair glycemic control, while a higher dose of the same compound resulted in substantially improved glucose tolerance and insulin sensitivity, despite all doses being equally effective at reducing hepatic triglyceride levels. Improvements in glycemic control and insulin sensitivity were observed only in treatments that also increased body temperature, suggesting that the induction of thermogenesis may play a role in mediating these beneficial effects. These data illustrate that the relationship between TR activation and insulin sensitivity is complex and suggests that although TR agonists may have value in treating NAFLD, their effect on insulin sensitivity must also be considered.


Subject(s)
Insulin Resistance , Non-alcoholic Fatty Liver Disease/drug therapy , Receptors, Thyroid Hormone/agonists , Acetates/pharmacology , Acetates/therapeutic use , Anilides/pharmacology , Anilides/therapeutic use , Animals , Blood Glucose/metabolism , Body Temperature/drug effects , Dose-Response Relationship, Drug , Enzyme Induction/drug effects , Glucose-6-Phosphatase/biosynthesis , Male , Mice , Mice, Obese , Phenols/pharmacology , Phenols/therapeutic use , Time Factors
8.
Am J Physiol Endocrinol Metab ; 305(1): E89-100, 2013 Jul 01.
Article in English | MEDLINE | ID: mdl-23651850

ABSTRACT

Liver-specific thyroid hormone receptor-ß (TRß)-specific agonists are potent lipid-lowering drugs that also hold promise for treating nonalcoholic fatty liver disease and hepatic insulin resistance. We investigated the effect of two TRß agonists (GC-1 and KB-2115) in high-fat-fed male Sprague-Dawley rats treated for 10 days. GC-1 treatment reduced hepatic triglyceride content by 75%, but the rats developed fasting hyperglycemia and hyperinsulinemia, attributable to increased endogenous glucose production (EGP) and diminished hepatic insulin sensitivity. GC-1 also increased white adipose tissue lipolysis; the resulting increase in glycerol flux may have contributed to the increase in EGP. KB-2115, a more TRß- and liver-specific thyromimetic, also prevented hepatic steatosis but did not induce fasting hyperglycemia, increase basal EGP rate, or diminish hepatic insulin sensitivity. Surprisingly, insulin-stimulated peripheral glucose disposal was diminished because of a decrease in insulin-stimulated skeletal muscle glucose uptake. Skeletal muscle insulin signaling was unaffected. Instead, KB-2115 treatment was associated with a decrease in GLUT4 protein content. Thus, although both GC-1 and KB-2115 potently treat hepatic steatosis in fat-fed rats, they each worsen insulin action via specific and discrete mechanisms. The development of future TRß agonists must consider the potential adverse effects on insulin sensitivity.


Subject(s)
Acetates/pharmacology , Anilides/pharmacology , Fatty Liver/metabolism , Fatty Liver/prevention & control , Insulin Resistance/physiology , Phenols/pharmacology , Thyroid Hormone Receptors beta/agonists , Animals , Dietary Fats/pharmacology , Fatty Liver/drug therapy , Gene Expression/drug effects , Gluconeogenesis/drug effects , Gluconeogenesis/physiology , Glucose Transporter Type 4/metabolism , Hyperglycemia/chemically induced , Hyperglycemia/metabolism , Hyperinsulinism/chemically induced , Hyperinsulinism/metabolism , Male , Muscle, Skeletal/drug effects , Muscle, Skeletal/metabolism , Non-alcoholic Fatty Liver Disease , Rats , Rats, Sprague-Dawley , Signal Transduction/drug effects , Signal Transduction/physiology , Thyroid Hormone Receptors beta/metabolism , Triglycerides/metabolism
9.
Nat Struct Mol Biol ; 20(6): 740-7, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23644595

ABSTRACT

IscR from Escherichia coli is an unusual metalloregulator in that both apo and iron sulfur (Fe-S)-IscR regulate transcription and exhibit different DNA binding specificities. Here, we report structural and biochemical studies of IscR suggesting that remodeling of the protein-DNA interface upon Fe-S ligation broadens the DNA binding specificity of IscR from binding the type 2 motif only to both type 1 and type 2 motifs. Analysis of an apo-IscR variant with relaxed target-site discrimination identified a key residue in wild-type apo-IscR that, we propose, makes unfavorable interactions with a type 1 motif. Upon Fe-S binding, these interactions are apparently removed, thereby allowing holo-IscR to bind both type 1 and type 2 motifs. These data suggest a unique mechanism of ligand-mediated DNA site recognition, whereby metallocluster ligation relocates a protein-specificity determinant to expand DNA target-site selection, allowing a broader transcriptomic response by holo-IscR.


Subject(s)
DNA, Bacterial/metabolism , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/metabolism , Escherichia coli/enzymology , Metals/metabolism , Transcription Factors/chemistry , Transcription Factors/metabolism , Crystallography, X-Ray , Escherichia coli/chemistry , Escherichia coli/metabolism , Models, Biological , Models, Molecular , Nucleic Acid Conformation , Protein Binding , Substrate Specificity
10.
Cell Metab ; 17(3): 411-22, 2013 Mar 05.
Article in English | MEDLINE | ID: mdl-23473035

ABSTRACT

Adipose-resident T cells (ARTs) regulate metabolic and inflammatory responses in obesity, but ART activation signals are poorly understood. Here, we describe class II major histocompatibility complex (MHCII) as an important component of high-fat-diet (HFD)-induced obesity. Microarray analysis of primary adipocytes revealed that multiple genes involved in MHCII antigen processing and presentation increased in obese women. In mice, adipocyte MHCII increased within 2 weeks on HFD, paralleling increases in proinflammatory ART markers and decreases in anti-inflammatory ART markers, and preceding adipose tissue macrophage (ATM) accumulation and proinflammatory M1 polarization. Mouse 3T3-L1 and primary adipocytes activated T cells in an antigen-specific, contact-dependent manner, indicating that adipocyte MHCII is functional. HFD-fed MHCII(-/-) mice developed less adipose inflammation and insulin resistance than did wild-type mice, despite developing similar adiposity. These investigations uncover a mechanism whereby a HFD-induced adipocyte/ART dialog involving MHCII instigates adipose inflammation and, together with ATM MHCII, escalates its progression.


Subject(s)
Adipocytes/metabolism , Genes, MHC Class II/immunology , Inflammation/immunology , Obesity/immunology , 3T3-L1 Cells , Animals , Blotting, Western , Diet, High-Fat/adverse effects , Female , Flow Cytometry , HEK293 Cells , Humans , Immunohistochemistry , Inflammation/etiology , Inflammation/metabolism , Macrophages/immunology , Mice , Mice, Knockout , Microarray Analysis , Obesity/complications , Reverse Transcriptase Polymerase Chain Reaction , Statistics, Nonparametric
11.
Endocrinology ; 153(12): 6136-44, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23087171

ABSTRACT

The majority of cholesterol reduction therapies, such as the statin drugs, work primarily by inducing the expression of hepatic low-density lipoprotein receptors (LDLRs), rendering these therapeutics only partially effective in animals lacking LDLRs. Although thyroid hormones and their synthetic derivatives, often referred to as thyromimetics, have been clearly shown to reduce serum cholesterol levels, this action has generally been attributed to their ability to increase expression of hepatic LDLRs. Here we show for the first time that the thyroid hormone T(3) and the thyroid hormone receptor-ß selective agonists GC-1 and KB2115 are capable of markedly reducing serum cholesterol in mice devoid of functional LDLRs by inducing Cyp7a1 expression and stimulating the conversion and excretion of cholesterol as bile acids. Based on this LDLR-independent mechanism, thyromimetics such as GC-1 and KB2115 may represent promising cholesterol-lowering therapeutics for the treatment of diseases such as homozygous familial hypercholesterolemia, a rare genetic disorder caused by a complete lack of functional LDLRs, for which there are limited treatment options because most therapeutics are only minimally effective.


Subject(s)
Cholesterol/blood , Receptors, LDL/metabolism , Receptors, Thyroid Hormone/agonists , Acetates/pharmacology , Anilides/pharmacology , Animals , Apolipoproteins B/metabolism , Cholesterol 7-alpha-Hydroxylase/metabolism , Feces , Lipoproteins/metabolism , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Phenols/pharmacology , Thyroid Hormone Receptors beta/metabolism , Triglycerides/metabolism , Triiodothyronine/metabolism
12.
Antimicrob Agents Chemother ; 56(11): 5667-77, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22908171

ABSTRACT

Metallo-ß-lactamases catalyze the hydrolysis of a broad range of ß-lactam antibiotics and are a concern for the spread of drug resistance. To analyze the determinants of enzyme structure and function, the sequence requirements for the subclass B1 IMP-1 ß-lactamase zinc binding residue Cys221 were tested by saturation mutagenesis and evaluated for protein expression, as well as hydrolysis of ß-lactam substrates. The results indicated that most substitutions at position 221 destabilized the enzyme. Only the enzymes containing C221D and C221G substitutions were expressed well in Escherichia coli and exhibited catalytic activity toward ß-lactam antibiotics. Despite the lack of a metal-chelating group at position 221, the C221G enzyme exhibited high levels of catalytic activity in the presence of exogenous zinc. Molecular modeling suggests the glycine substitution is unique among substitutions in that the complete removal of the cysteine side chain allows space for a water molecule to replace the thiol and coordinate zinc at the Zn2 zinc binding site to restore function. Multiple methods were used to estimate the C221G Zn2 binding constant to be 17 to 43 µM. Studies of enzyme function in vivo in E. coli grown on minimal medium showed that both IMP-1 and the C221G mutant exhibited compromised activity when zinc availability was low. Finally, substitutions at residue 121, which is the IMP-1 equivalent of the subclass B3 zinc-chelating position, failed to rescue C221G function, suggesting the coordination schemes of subclasses B1 and B3 are not interchangeable.


Subject(s)
Cysteine/metabolism , Escherichia coli/genetics , Glycine/metabolism , Zinc/chemistry , beta-Lactamases/metabolism , beta-Lactams/metabolism , Amino Acid Substitution , Catalytic Domain , Cysteine/chemistry , Cysteine/genetics , Escherichia coli/enzymology , Glycine/chemistry , Glycine/genetics , Kinetics , Ligands , Microbial Sensitivity Tests , Models, Molecular , Mutagenesis , Protein Binding , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Water/chemistry , Zinc/metabolism , beta-Lactamases/chemistry , beta-Lactamases/genetics , beta-Lactams/chemistry
13.
J Biol Chem ; 287(33): 28169-79, 2012 Aug 10.
Article in English | MEDLINE | ID: mdl-22584573

ABSTRACT

The recent discovery that peroxisome proliferator-activated receptor γ (PPARγ) targeted anti-diabetic drugs function by inhibiting Cdk5-mediated phosphorylation of the receptor has provided a new viewpoint to evaluate and perhaps develop improved insulin-sensitizing agents. Herein we report the development of a novel thiazolidinedione that retains similar anti-diabetic efficacy as rosiglitazone in mice yet does not elicit weight gain or edema, common side effects associated with full PPARγ activation. Further characterization of this compound shows GQ-16 to be an effective inhibitor of Cdk5-mediated phosphorylation of PPARγ. The structure of GQ-16 bound to PPARγ demonstrates that the compound utilizes a binding mode distinct from other reported PPARγ ligands, although it does share some structural features with other partial agonists, such as MRL-24 and PA-082, that have similarly been reported to dissociate insulin sensitization from weight gain. Hydrogen/deuterium exchange studies reveal that GQ-16 strongly stabilizes the ß-sheet region of the receptor, presumably explaining the compound's efficacy in inhibiting Cdk5-mediated phosphorylation of Ser-273. Molecular dynamics simulations suggest that the partial agonist activity of GQ-16 results from the compound's weak ability to stabilize helix 12 in its active conformation. Our results suggest that the emerging model, whereby "ideal" PPARγ-based therapeutics stabilize the ß-sheet/Ser-273 region and inhibit Cdk5-mediated phosphorylation while minimally invoking adipogenesis and classical agonism, is indeed a valid framework to develop improved PPARγ modulators that retain antidiabetic actions while minimizing untoward effects.


Subject(s)
Hypoglycemic Agents/pharmacology , PPAR gamma/agonists , Thiazolidinediones/pharmacology , Weight Gain , 3T3-L1 Cells , Animals , Cyclin-Dependent Kinase 5/genetics , Cyclin-Dependent Kinase 5/metabolism , Drug Evaluation, Preclinical , Humans , Hypoglycemic Agents/chemistry , Hypoglycemic Agents/pharmacokinetics , Ligands , Mice , NIH 3T3 Cells , PPAR gamma/genetics , PPAR gamma/metabolism , Phosphorylation/drug effects , Phosphorylation/genetics , Protein Structure, Secondary , Thiazolidinediones/chemistry , Thiazolidinediones/pharmacokinetics , U937 Cells
14.
Mol Endocrinol ; 21(12): 2919-28, 2007 Dec.
Article in English | MEDLINE | ID: mdl-17823305

ABSTRACT

The development of nuclear hormone receptor antagonists that directly inhibit the association of the receptor with its essential coactivators would allow useful manipulation of nuclear hormone receptor signaling. We previously identified 3-(dibutylamino)-1-(4-hexylphenyl)-propan-1-one (DHPPA), an aromatic beta-amino ketone that inhibits coactivator recruitment to thyroid hormone receptor beta (TRbeta), in a high-throughput screen. Initial evidence suggested that the aromatic beta-enone 1-(4-hexylphenyl)-prop-2-en-1-one (HPPE), which alkylates a specific cysteine residue on the TRbeta surface, is liberated from DHPPA. Nevertheless, aspects of the mechanism and specificity of action of DHPPA remained unclear. Here, we report an x-ray structure of TRbeta with the inhibitor HPPE at 2.3-A resolution. Unreacted HPPE is located at the interface that normally mediates binding between TRbeta and its coactivator. Several lines of evidence, including experiments with TRbeta mutants and mass spectroscopic analysis, showed that HPPE specifically alkylates cysteine residue 298 of TRbeta, which is located near the activation function-2 pocket. We propose that this covalent adduct formation proceeds through a two-step mechanism: 1) beta-elimination to form HPPE; and 2) a covalent bond slowly forms between HPPE and TRbeta. DHPPA represents a novel class of potent TRbeta antagonist, and its crystal structure suggests new ways to design antagonists that target the assembly of nuclear hormone receptor gene-regulatory complexes and block transcription.


Subject(s)
Receptors, Thyroid Hormone/antagonists & inhibitors , Receptors, Thyroid Hormone/metabolism , Acetone/chemistry , Acetone/pharmacology , Amino Acid Sequence , Binding Sites , Cysteine/genetics , Cysteine/metabolism , Humans , Ketones/chemistry , Ligands , Mass Spectrometry , Models, Molecular , Molecular Sequence Data , Mutation/genetics , Protein Binding , Protein Structure, Tertiary
16.
J Am Chem Soc ; 128(34): 11298-306, 2006 Aug 30.
Article in English | MEDLINE | ID: mdl-16925449

ABSTRACT

We modified an existing selection for protein-protein interactions based on the fragment complementation of the enzyme DHFR. Using shotgun alanine scanning in conjunction with this selection, we analyzed the interaction of the nuclear receptor PPARgamma with two peptides derived from nuclear receptor coactivators SRC1 and TRAP220. A large binding epitope stretching between and including the charge clamp residues K301 and E471 of PPARgamma was identified as necessary for PPARgamma-coactivator interaction. To decouple protein stability from the propensity to form a receptor-coactivator interface, libraries of PPARgamma variants generated by shotgun scanning were further processed using a high-throughput screen measuring their in vivo stabilities. Our findings demonstrate that many of the residues that make up the binding epitope of PPARgamma are also crucial for the stability of the PPARgamma.


Subject(s)
Alanine/chemistry , PPAR gamma/metabolism , Amino Acid Sequence , Blotting, Western , Models, Molecular , Molecular Sequence Data , Protein Binding
17.
Curr Opin Chem Biol ; 6(3): 367-74, 2002 Jun.
Article in English | MEDLINE | ID: mdl-12023118

ABSTRACT

Molecular evolution allows chemists and biologists to generate nucleic acids with tailor-made binding or catalytic activities. Recent examples of nucleic acid evolution in vitro provide insights into natural ribozyme evolution and also demonstrate potential applications of evolved DNA and RNA molecules. Efforts to expand the scope of nucleic acid evolution are also underway, including the development of novel methods for exploring nucleic acid sequence-space and the incorporation of non-natural chemical functionality into nucleic acid libraries.


Subject(s)
DNA/chemistry , Evolution, Molecular , RNA/chemistry , Base Sequence , Catalysis , DNA/genetics , DNA/metabolism , RNA/genetics , RNA/metabolism , RNA, Catalytic
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