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2.
Sci Rep ; 10(1): 12760, 2020 07 29.
Article in English | MEDLINE | ID: mdl-32728084

ABSTRACT

We explore the use of continuous scanning during data acquisition for Bragg coherent diffraction imaging, i.e., where the sample is in continuous motion. The fidelity of continuous scanning Bragg coherent diffraction imaging is demonstrated on a single Pt nanoparticle in a flow reactor at [Formula: see text] in an Ar-based gas flowed at 50 ml/min. We show a reduction of 30% in total scan time compared to conventional step-by-step scanning. The reconstructed Bragg electron density, phase, displacement and strain fields are in excellent agreement with the results obtained from conventional step-by-step scanning. Continuous scanning will allow to minimise sample instability under the beam and will become increasingly important at diffraction-limited storage ring light sources.

3.
J Appl Crystallogr ; 48(Pt 2): 510-519, 2015 Apr 01.
Article in English | MEDLINE | ID: mdl-25844080

ABSTRACT

pyFAI is an open-source software package designed to perform azimuthal integration and, correspondingly, two-dimensional regrouping on area-detector frames for small- and wide-angle X-ray scattering experiments. It is written in Python (with binary submodules for improved performance), a language widely accepted and used by the scientific community today, which enables users to easily incorporate the pyFAI library into their processing pipeline. This article focuses on recent work, especially the ease of calibration, its accuracy and the execution speed for integration.

4.
J Trace Elem Med Biol ; 27(4): 326-33, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23582484

ABSTRACT

We aimed to examine the presence of Zn, a trace element, in osteoarthritis (OA) cartilage and meniscus from patients undergoing total knee joint replacement for primary OA. We mapped Ca(2+) and Zn(2+) at the mesoscopic scale by X-ray fluorescence microanalysis (µX-ray) to determine the spatial distribution of the 2 elements in cartilage, µX-ray absorption near edge structure spectroscopy to identify the Zn species, and µX-ray diffraction to determine the chemical nature of the calcification. Fourier transform infrared spectroscopy was used to determine the chemical composition of cartilage and meniscus. Ca(2+) showed a heterogeneous spatial distribution corresponding to the calcifications within cartilage (or meniscus) or at their surface. At least 2 Zn(2+) species were present: the first may correspond to Zn embedded in protein (different Zn metalloproteins are known to prevent calcification in biological tissues), and the second may be associated with a Zn trap in or at the surface of the calcification. Calcification present in OA cartilage may significantly modify the spatial distribution of Zn; part of the Zn may be trapped in the calcification and may alter the associated biological function of Zn metalloproteins.


Subject(s)
Cartilage, Articular/chemistry , Knee Joint/chemistry , Light , Menisci, Tibial/chemistry , Osteoarthritis , Zinc/analysis , Aged , Cartilage, Articular/pathology , Cations/analysis , Humans , Knee Joint/pathology , Male , Menisci, Tibial/pathology , Osteoarthritis/pathology , Spectrometry, X-Ray Emission , X-Ray Absorption Spectroscopy , X-Ray Diffraction
5.
Sci Rep ; 2: 1018, 2012.
Article in English | MEDLINE | ID: mdl-23264880

ABSTRACT

Microsecond (µs) time-resolved extended X-ray absorption fine structure spectroscopy (EXAFS) has been developed using an energy-dispersive EXAFS (EDE) setup equipped with a silicon Quantum Detector ULTRA. The feasibility was investigated with a prototypical thermally driven redox reaction, the thermal decomposition of (NH4)2[PtCl6]. EXAFS data were collected with snapshots every 60 µs during the course of the thermolysis reaction, then averaged for 100 times along the reaction to get better signal to noise ratio which reduces the time resolution to 6 millisecond (ms). Our results provide direct structural evidence of cis-PtCl2(NH3)2 as the intermediate, together with continuous electronic and geometric structure dynamics of the reactant, intermediate and final product during the course of the thermolysis of ((NH4)2[PtCl6]. The thermal effect on EXAFS signals at high temperatures is considered in the data analysis, which is essential to follow the reaction process correctly. This method could also be applied to other reaction dynamics.

6.
J Synchrotron Radiat ; 19(Pt 3): 323-31, 2012 May.
Article in English | MEDLINE | ID: mdl-22514165

ABSTRACT

The XPAD3S-CdTe, a CdTe photon-counting pixel array detector, has been used to measure the energy and the intensity of the white-beam diffraction from a lysozyme crystal. A method was developed to calibrate the detector in terms of energy, allowing incident photon energy measurement to high resolution (approximately 140 eV), opening up new possibilities in energy-resolved X-ray diffraction. In order to demonstrate this, Laue diffraction experiments were performed on the bending-magnet beamline METROLOGIE at Synchrotron SOLEIL. The X-ray energy spectra of diffracted spots were deduced from the indexed Laue patterns collected with an imaging-plate detector and then measured with both the XPAD3S-CdTe and the XPAD3S-Si, a silicon photon-counting pixel array detector. The predicted and measured energy of selected diffraction spots are in good agreement, demonstrating the reliability of the calibration method. These results open up the way to direct unit-cell parameter determination and the measurement of high-quality Laue data even at low resolution. Based on the success of these measurements, potential applications in X-ray diffraction opened up by this type of technology are discussed.


Subject(s)
Crystallography, X-Ray/methods , Muramidase/chemistry , Animals , Calibration , Chickens , Photons , Synchrotrons/instrumentation
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