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1.
Gynecol Obstet Fertil Senol ; 51(9): 400-407, 2023 09.
Article in French | MEDLINE | ID: mdl-37331511

ABSTRACT

INTRODUCTION: Diminished ovarian reserve remains a challenge in the reproductive medicine field. Treatment options for these patients are limited and there is no consensus to make any recommendations. Regarding adjuvant supplements, DHEA could play a role in follicular recruitment and, therefore, may increase spontaneous pregnancy rate. MATERIALS AND METHODS: This study was a monocentric historical and observational cohort study carried out in the reproductive medicine department at the University Hospital, Femme-Mère-Enfant in Lyon. All women presenting with a diminished ovarian reserve treated with 75mg/day of DHEA were consecutively included. The main objective was to evaluate the spontaneous pregnancy rate. The secondary objectives were to identify predictive factors for pregnancy and the evaluation of treatment side effects. RESULTS: Four hundred and thirty-nine women were included. In all, 277 were analyzed, 59 had a spontaneous pregnancy (21.3%). The probability of being pregnant was respectively 13.2% (IC95 9-17.2%), 21.3% (IC95 15.1-27%) and 38.8% (IC95 29.3-48.4%) at 6, 12 and 24 months. Only 20.6% of patients complained of side effects. CONCLUSION: DHEA may improve spontaneous pregnancies in women with diminished ovarian reserve without any stimulation.


Subject(s)
Infertility, Female , Ovarian Diseases , Ovarian Reserve , Pregnancy , Humans , Female , Dehydroepiandrosterone/therapeutic use , Ovarian Reserve/physiology , Pregnancy Rate , Cohort Studies , Infertility, Female/drug therapy , Fertilization in Vitro
2.
Vitam Horm ; 102: 25-54, 2016.
Article in English | MEDLINE | ID: mdl-27450729

ABSTRACT

ß-Thymosins are a family of heat-stable multifunctional polypeptides that are expressed as small proteins of about 5kDa (~45 amino acids) almost exclusively in multicellular animals. They were first isolated from the thymus. As full-length or truncated polypeptides, they appear to stimulate a broad range of extracellular activities in various signaling pathways, including tissue repair and regeneration, inflammation, cell migration, and immune defense. However, their cell surface receptors and structural mechanisms of regulations in these multiple pathways remain still poorly understood. Besides their extracellular activities, they belong to a larger family of small, intrinsically disordered actin-binding domains called WH2/ß-thymosin domains that have been identified in more than 1800 multidomain proteins found in different taxonomic domains of life and involved in various actin-based motile processes including cell morphogenesis, motility, adhesions, tissue development, intracellular trafficking, or pathogen infections. This review briefly surveys the main recent findings to understand how these small, intrinsically disordered but functional domains can interact with many unrelated partners and can thus integrate and coordinate various intracellular activities in actin self-assembly dynamics and cell signaling pathways linked to their cytoskeleton remodeling.


Subject(s)
Actins/metabolism , Cytoskeleton/physiology , Thymosin/chemistry , Thymosin/physiology , Amino Acid Sequence , Binding Sites/physiology , Cell Physiological Phenomena , Humans , Intrinsically Disordered Proteins/chemistry , Intrinsically Disordered Proteins/physiology , Molecular Structure , Profilins/physiology , Protein Binding , Protein Conformation , Protein Folding , Receptors, Immunologic/physiology , Repetitive Sequences, Nucleic Acid , Signal Transduction
3.
Ann Cardiol Angeiol (Paris) ; 63(2): 75-82, 2014 Apr.
Article in French | MEDLINE | ID: mdl-24485824

ABSTRACT

BACKGROUND: Tako-Tsubo syndrome is a reversible left ventricular myocardial dysfunction. There are few publications on its evolution and the purpose of this study is to describe the medium-term outcome of patients who presented this pathology. METHODS: This retrospective study included 70 patients presenting with Tako-Tsubo syndrome who were referred to Haut-Lévèque hospital between November 2003 and January 2012. The parameters included in follow-up were: number of cardiovascular events, recurrence, electrocardiographic and echocardiographic evolution. RESULTS: Sixty-eight patients had a mean follow-up of 4.8±2.4 years. The survival rate was 92%, 39 patients (57%) showed no cardiovascular symptoms, 12 (18%) had one or more new episodes of chest pain and 4 (6%) had stage II dyspnoea on the NYHA classification scale. One patient had a recurrence 6.5 years later, triggered by the same stress as the first instance. Forty-five patients (64%) had ECGs which evolved in the early days to diffuse T-wave inversion. In the medium term, 32 (54%) patients had a normal ECG, 19 (32%) had inverted T-waves in precordial leads and 2 (3%) had Q-waves. In terms of echocardiography, left ventricular ejection fraction was normal in all with variable delays. Four patients continued to have apical hypokinesia. CONCLUSION: This study shows that the medium-term outlook is favourable in terms of cardiovascular mortality and that recurrence is rare. It highlights, however, the persistence of electrocardiographic and echocardiographic abnormalities.


Subject(s)
Takotsubo Cardiomyopathy/diagnosis , Aged , Chest Pain/etiology , Dyspnea/etiology , Electrocardiography , Female , Follow-Up Studies , France/epidemiology , Humans , Male , Middle Aged , Recurrence , Retrospective Studies , Risk Factors , Survival Rate , Takotsubo Cardiomyopathy/complications , Takotsubo Cardiomyopathy/diagnostic imaging , Takotsubo Cardiomyopathy/mortality , Ultrasonography
4.
Sex Dev ; 5(6): 304-17, 2011.
Article in English | MEDLINE | ID: mdl-22116255

ABSTRACT

In vertebrates, 2 main genetic pathways have been shown to regulate ovarian development. Indeed, a loss of function mutations in Rspo1 and Foxl2 promote partial female-to-male sex reversal. In mice, it has been shown that the secreted protein RSPO1 is involved in ovarian differentiation and the transcription factor FOXL2 is required for follicular formation. Here, we analysed the potential interactions between these 2 genetic pathways and have shown that while Rspo1 expression seems to be independent of Foxl2 up-regulation, Foxl2 expression partly depends of Rspo1 signalisation. This suggests that different Foxl2-positive somatic cell lineages exist within the ovaries. In addition, a combination of both mutated genes in XX Foxl2(-/-)/Rspo1(-/-) gonads promotes sex reversal, detectable at earlier stages than in XX Rspo1(-/-) mutants. Ectopic development of the steroidogenic lineage is more pronounced in XX Foxl2(-/-)/Rspo1(-/-) gonads than in XX Rspo1(-/-) embryos, suggesting that Foxl2 is involved in preventing ectopic steroidogenesis in foetal ovaries.


Subject(s)
Forkhead Transcription Factors/metabolism , Thrombospondins/metabolism , Animals , Disorders of Sex Development/genetics , Female , Forkhead Box Protein L2 , Forkhead Transcription Factors/genetics , Genotype , In Situ Hybridization , Male , Mice , Ovary/embryology , Ovary/metabolism , Phenotype , Reverse Transcriptase Polymerase Chain Reaction , Sex Differentiation/genetics , Sex Differentiation/physiology , Thrombospondins/genetics
5.
Sex Dev ; 2(3): 142-51, 2008.
Article in English | MEDLINE | ID: mdl-18769074

ABSTRACT

The Polled Intersex Syndrome (PIS mutation) in goats leads to an absence of horn and to an early sex-reversal of the XX gonads. This mutation is a deletion of an 11.7-kb DNA fragment showing a tissue-specific regulatory activity. Indeed, in XX PIS(-/-) gonads the deletion of PIS leads to the transcriptional extinction of at least 3 neighboring genes, FOXL2, PFOXic and PISRT1. Among them, only FOXL2 is a 'classical' gene, encoding a highly conserved transcription factor. On the other hand, knock-out of Foxl2 in mice results in an early blocking of follicle formation without sex-reversal. This phenotype discrepancy leads to two hypotheses, either FOXL2 is responsible for XX sex-reversal in goat assuming distinct functions of its protein during ovarian differentiation in different mammals, or other PIS-regulated genes are involved. To assess the second possibility, PISRT1 expression was constitutively restored in XX PIS(-/-) gonads. Six transgenic fetuses were obtained by nuclear transfer and studied at 2 developmental stages, 41 and 46 days post-reconstruction. The gonads of these fetuses appear phenotypically identical to those of cloned non-transgenic controls. Conclusively, this result argues for FOXL2 being responsible for the PIS gonad-associated phenotype. Its invalidation in goat will help to better understand this complex syndrome.


Subject(s)
DNA-Binding Proteins/genetics , Disorders of Sex Development , Goats/genetics , Sex Determination Processes , X Chromosome , Animals , Animals, Genetically Modified , Cloning, Organism , Embryo, Mammalian , Embryonic Development/genetics , Female , Genetic Therapy , Male , Phenotype , Transgenes , X Chromosome/genetics
6.
Insect Mol Biol ; 16(6): 651-60, 2007 Dec.
Article in English | MEDLINE | ID: mdl-18092995

ABSTRACT

Parasitic manipulations of host behaviour are known from a wide range of host-parasite associations. However, the understanding of these phenomena is far from complete and detailed investigation of their proximate causes is needed. Many studies report behavioural modifications, such as altered feeding rates in tsetse fly (Glossina) infected with the mature transmissible stage (i.e. metacyclic) of the trypanosomes. Here, bidimensional (2D) gel electrophoresis and mass spectrometry were employed to analyse and compare the head proteome between four Glossina palpalis gambiensis categories (uninfected, refractory, mature infection, immature infection). Twenty-four protein spots specifically present or absent in the head of metacyclic-infected flies were observed. These protein spots were subsequently identified and functionally classified as glycolitic, neurotransmiter synthesis, signalling, molecular chaperone and transcriptional regulation proteins. Our results indicate altered energy metabolism in the head of metacyclic-infected tsetse flies. Some of the proteins identified, such as casein kinase 2 and jun kinase have previously been shown to play critical roles in apoptosis in insect neurones. In addition, we found two pyridoxal-dependent decarboxylases (dopa decarboxylase and alpha methyldopa hypersensitive protein), suggesting a modification of serotonin and/or dopamine in the brain of metacyclic-infected tsetse flies. Our data pave the way for future investigation of the alteration of the glossina central nervous system during infection by trypanosomes.


Subject(s)
Proteome/metabolism , Trypanosoma brucei brucei/pathogenicity , Tsetse Flies/metabolism , Tsetse Flies/parasitology , Animals , Behavior, Animal , Electrophoresis, Gel, Two-Dimensional , Energy Metabolism , Gene Expression Regulation , Glycolysis , Host-Parasite Interactions , Insect Proteins/isolation & purification , Insect Proteins/metabolism , Insect Vectors/genetics , Insect Vectors/metabolism , Insect Vectors/parasitology , Neurotransmitter Agents/metabolism , Proteome/isolation & purification , Signal Transduction , Tsetse Flies/genetics
7.
Dev Dyn ; 236(3): 836-42, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17226816

ABSTRACT

Expression of the goat prion protein gene locus was assessed by reverse transcriptase-polymerase chain reaction on testes and ovaries at various developmental stages. A weak and stochastic expression of the PRNP and PRNT genes was observed. For PRNT, it is consistent with the detected deletions of two single nucleotides within its open reading frame in ruminant genes. PRND was expressed in both tissues at all stages. Whereas its expression is constant in the ovaries, it increases in testes between 36 and 46 days postcoitum (dpc) and remains high thereafter. In testes, Doppel was found in the nucleus of germinal cells and in the cytoplasm of Leydig cells at 44 dpc. It was detected in the cytoplasm of Leydig cells and of some Sertoli and germinal cells at 62 dpc. In the ovaries, it was observed in the nucleus of germinal cells at 44 dpc and mainly in their cytoplasm at 62 dpc. This expression pattern was shown to parallel that of C-kit and suggests Doppel involvement in early testis differentiation.


Subject(s)
Gene Expression Profiling , Goats/genetics , Prions/genetics , Sex Differentiation/genetics , Amino Acid Sequence , Animals , Base Sequence , Cattle , Female , Gene Expression Regulation, Developmental , Goats/embryology , Humans , Immunohistochemistry , Male , Molecular Sequence Data , Ovary/chemistry , Ovary/embryology , Ovary/metabolism , Pregnancy , Prions/metabolism , Proto-Oncogene Proteins c-kit/genetics , Proto-Oncogene Proteins c-kit/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Sequence Alignment , Sequence Analysis, DNA , Testis/chemistry , Testis/embryology , Testis/metabolism
8.
Proc Biol Sci ; 273(1603): 2869-77, 2006 Nov 22.
Article in English | MEDLINE | ID: mdl-17015311

ABSTRACT

Phylogenetically unrelated parasites often increase the chances of their transmission by inducing similar phenotypic changes in their hosts. However, it is not known whether these convergent strategies rely on the same biochemical precursors. In this paper, we explored such aspects by studying two gammarid species (Gammarus insensibilis and Gammarus pulex; Crustacea: Amphipoda: Gammaridae) serving as intermediate hosts in the life cycle of two distantly related parasites: the trematode, Microphallus papillorobustus and the acanthocephalan, Polymorphus minutus. Both these parasite species are known to manipulate the behaviour of their amphipod hosts, bringing them towards the water surface, where they are preferentially eaten by aquatic birds (definitive hosts). By studying and comparing the brains of infected G. insensibilis and G. pulex with proteomics tools, we have elucidated some of the proximate causes involved in the parasite-induced alterations of host behaviour for each system. Protein identifications suggest that altered physiological compartments in hosts can be similar (e.g. immunoneural connexions) or different (e.g. vision process), and hence specific to the host-parasite association considered. Moreover, proteins required to alter the same physiological compartment can be specific or conversely common in both systems, illustrating in the latter case a molecular convergence in the proximate mechanisms of manipulation.


Subject(s)
Acanthocephala/physiology , Amphipoda/parasitology , Behavior, Animal/physiology , Trematoda/physiology , Acanthocephala/classification , Amphipoda/metabolism , Amphipoda/physiology , Animals , Electrophoresis, Gel, Two-Dimensional , Host-Parasite Interactions , Peptide Mapping , Phylogeny , Proteomics , Trematoda/classification
9.
Parasitology ; 133(Pt 5): 631-8, 2006 Nov.
Article in English | MEDLINE | ID: mdl-16863603

ABSTRACT

One of the most fascinating anti-predator responses displayed by parasites is that of hairworms (Nematomorpha). Following the ingestion of the insect host by fish or frogs, the parasitic worm is able to actively exit both its host and the gut of the predator. Using as a model the hairworm, Paragordius tricuspidatus, (parasitizing the cricket Nemobius sylvestris) and the fish predator Micropterus salmoïdes, we explored, with proteomics tools, the physiological basis of this anti-predator response. By examining the proteome of the parasitic worm, we detected a differential expression of 27 protein spots in those worms able to escape the predator. Peptide Mass Fingerprints of candidate protein spots suggest the existence of an intense muscular activity in escaping worms, which functions in parallel with their distinctive biology. In a second step, we attempted to determine whether the energy expended by worms to escape the predator is traded off against its reproductive potential. Remarkably, the number of offspring produced by worms having escaped a predator was not reduced compared with controls.


Subject(s)
Bass/parasitology , Ecosystem , Helminths/physiology , Animals , Behavior, Animal , Electrophoresis, Gel, Two-Dimensional , Female , Gills/parasitology , Gryllidae/parasitology , Helminth Proteins/metabolism , Helminths/growth & development , Helminths/metabolism , Host-Parasite Interactions , Male , Mouth/parasitology , Muscles/metabolism , Reproduction
10.
Insect Mol Biol ; 15(6): 731-42, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17201766

ABSTRACT

Despite increasing evidence of host phenotypic manipulation by parasites, the underlying mechanisms causing infected hosts to act in ways that benefit the parasite remain enigmatic in most cases. Here, we used proteomics tools to identify the biochemical alterations that occur in the head of the cricket Nemobius sylvestris when it is driven to water by the hairworm Paragordius tricuspidatus. We characterized host and parasite proteomes during the expression of the water-seeking behaviour. We found that the parasite produces molecules from the Wnt family that may act directly on the development of the central nervous system (CNS). In the head of manipulated cricket, we found differential expression of proteins specifically linked to neurogenesis, circadian rhythm and neurotransmitter activities. We also detected proteins for which the function(s) are still unknown. This proteomics study on the biochemical pathways altered by hairworms has also allowed us to tackle questions of physiological and molecular convergence in the mechanism(s) causing the alteration of orthoptera behaviour. The two hairworm species produce effective molecules acting directly on the CNS of their orthoptera hosts.


Subject(s)
Gryllidae/physiology , Gryllidae/parasitology , Helminths/physiology , Proteomics , Amino Acid Sequence , Animals , Electrophoresis, Gel, Two-Dimensional , Helminth Proteins/analysis , Helminth Proteins/chemistry , Host-Parasite Interactions , Insect Proteins/analysis , Insect Proteins/chemistry , Male , Molecular Sequence Data , Proteome , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
11.
Proc Biol Sci ; 272(1577): 2117-26, 2005 Oct 22.
Article in English | MEDLINE | ID: mdl-16191624

ABSTRACT

The parasitic Nematomorph hairworm, Spinochordodes tellinii (Camerano) develops inside the terrestrial grasshopper, Meconema thalassinum (De Geer) (Orthoptera: Tettigoniidae), changing the insect's responses to water. The resulting aberrant behaviour makes infected insects more likely to jump into an aquatic environment where the adult parasite reproduces. We used proteomics tools (i.e. two-dimensional gel electrophoresis (2-DE), computer assisted comparative analysis of host and parasite protein spots and MALDI-TOF mass spectrometry) to identify these proteins and to explore the mechanisms underlying this subtle behavioural modification. We characterized simultaneously the host (brain) and the parasite proteomes at three stages of the manipulative process, i.e. before, during and after manipulation. For the host, there was a differential proteomic expression in relation to different effects such as the circadian cycle, the parasitic status, the manipulative period itself, and worm emergence. For the parasite, a differential proteomics expression allowed characterization of the parasitic and the free-living stages, the manipulative period and the emergence of the worm from the host. The findings suggest that the adult worm alters the normal functions of the grasshopper's central nervous system (CNS) by producing certain 'effective' molecules. In addition, in the brain of manipulated insects, there was found to be a differential expression of proteins specifically linked to neurotransmitter activities. The evidence obtained also suggested that the parasite produces molecules from the family Wnt acting directly on the development of the CNS. These proteins show important similarities with those known in other insects, suggesting a case of molecular mimicry. Finally, we found many proteins in the host's CNS as well as in the parasite for which the function(s) are still unknown in the published literature (www) protein databases. These results support the hypothesis that host behavioural changes are mediated by a mix of direct and indirect chemical manipulation.


Subject(s)
Behavior, Animal/physiology , Gene Expression Regulation , Grasshoppers/physiology , Grasshoppers/parasitology , Helminths/metabolism , Insect Proteins/metabolism , Animals , Brain/metabolism , Circadian Rhythm/genetics , Electrophoresis, Gel, Two-Dimensional , Grasshoppers/genetics , Grasshoppers/metabolism , Helminths/genetics , Host-Parasite Interactions , Image Processing, Computer-Assisted , Insect Proteins/genetics , Proteomics/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
12.
Int J Parasitol ; 35(13): 1385-97, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16102770

ABSTRACT

We report on the modification of the Aedes aegypti larval proteome following infection by the microsporidian parasite Vavraia culicis. Mosquito larvae were sampled at 5 and 15 days of age to compare the effects of infection when the parasite was in two different developmental stages. Modifications of the host proteome due to the stress of infection were distinguished from those of a more general nature by treatments involving hypoxia. We found that the major reaction to stress was the suppression of particular protein spots. Older (15 days) larvae reacted more strongly to infection by V. culicis (46% of the total number of spots affected; 17% for 5 days larvae), while the strongest reaction of younger (5 days) larvae was to hypoxia for pH range 5-8 and to combined effects of infection and hypoxia for pH range 3-6. MALDI-TOF results indicate that proteins induced or suppressed by infection are involved directly or indirectly in defense against microorganisms. Finally, our MALDI-TOF results suggest that A. aegypti larvae try to control or clear V. culicis infection and also that V. culicis probably impairs the immune defense of this host via arginases-NOS competition.


Subject(s)
Aedes/parasitology , Insect Proteins/metabolism , Microsporidia/metabolism , Microsporidiosis/metabolism , Aedes/growth & development , Aedes/metabolism , Animals , Electrophoresis, Gel, Two-Dimensional/methods , Host-Parasite Interactions , Hydrogen-Ion Concentration , Hypoxia/metabolism , Larva/metabolism , Larva/parasitology , Nitric Oxide Synthase/physiology , Proteome , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
13.
Heredity (Edinb) ; 86(Pt 3): 277-90, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11488965

ABSTRACT

Peruvian potato cyst nematode populations were analysed to assess both their inter- and intraspecific similarities. ITS--RFLP and two satellite DNA sequences were used as taxonomic tools. Both techniques have confirmed that the Peruvian populations have as their closest relatives the European Globodera pallida, despite the detection of clear differences that prevents us from assigning these South American populations unambiguously to any Globodera species. A more precise study of the variability of these Peruvian populations was investigated and they were compared with the imported European populations using protein (2-DGE) and DNA (RAPD) datasets. The clear distinction between the Peruvian and the European populations was confirmed and, inside each group, no correlation was found between the pathotype classification and the observed clustering of the populations. Surprisingly, while RAPDs revealed a higher variability in the Peruvian group than in the European one, some characteristic proteins were found by 2-DGE in some European populations, whereas it was impossible to find any in the Peruvian populations. It is concluded that the primary founders of the European populations may have an origin other than that of the Peruvian populations involved in this study.


Subject(s)
Gene Pool , Genes, Helminth , Genetic Variation , Tylenchoidea/classification , Tylenchoidea/genetics , Animals , Base Sequence , DNA Fingerprinting , DNA, Helminth/genetics , DNA, Helminth/isolation & purification , DNA, Ribosomal Spacer/genetics , DNA, Satellite/genetics , DNA, Satellite/isolation & purification , Electrophoresis, Gel, Two-Dimensional , Europe , Genes, rRNA , Helminth Proteins/analysis , Molecular Sequence Data , Peru , Polymorphism, Restriction Fragment Length , Random Amplified Polymorphic DNA Technique , Solanum tuberosum/parasitology , Species Specificity
14.
J Mol Biol ; 311(3): 557-68, 2001 Aug 17.
Article in English | MEDLINE | ID: mdl-11493009

ABSTRACT

Protein tyrosine phosphatases PTP-SL and PTPBR7 are isoforms belonging to cytosolic membrane-associated and to receptor-like PTPs (RPTPs), respectively. They represent a new family of PTPs with a major role in activation and translocation of MAP kinases. Specifically, the complex formation between PTP-SL and ERK2 involves an unusual interaction leading to the phosphorylation of PTP-SL by ERK2 at Thr253 and the inactivating dephosphorylation of ERK2 by PTP-SL. This interaction is strictly dependent upon a kinase interaction motif (KIM) (residues 224-239) situated at the N terminus of the PTP-SL catalytic domain. We report the first crystal structure of the catalytic domain for a member of this family (PTP-SL, residues 254-549, identical with residues 361-656 of PTPBR7), providing an example of an RPTP with single cytoplasmic domain, which is monomeric, having an unhindered catalytic site. In addition to the characteristic PTP-core structure, PTP-SL has an N-terminal helix, possibly orienting the KIM motif upon interaction with the target ERK2. An unusual residue in the catalytically important WPD loop promotes formation of a hydrophobically and electrostatically stabilised clamp. This could induce increased rigidity to the WPD loop and therefore reduced catalytic activity, in agreement with our kinetic measurements. A docking model based on the PTP-SL structure suggests that, in the complex with ERK2, the phosphorylation of PTP-SL should be accomplished first. The subsequent dephosphorylation of ERK2 seems to be possible only if a conformational rearrangement of the two interacting partners takes place.


Subject(s)
Catalytic Domain , Mitogen-Activated Protein Kinases/metabolism , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/metabolism , Protein Tyrosine Phosphatases/chemistry , Protein Tyrosine Phosphatases/metabolism , Amino Acid Motifs , Amino Acid Sequence , Animals , Binding Sites , Crystallography, X-Ray , Humans , Intracellular Signaling Peptides and Proteins , Kinetics , Mice , Mitogen-Activated Protein Kinase 1/chemistry , Mitogen-Activated Protein Kinase 1/metabolism , Mitogen-Activated Protein Kinases/chemistry , Models, Molecular , Molecular Sequence Data , Phosphorylation , Pliability , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Receptor-Like Protein Tyrosine Phosphatases, Class 7 , Sequence Alignment , Static Electricity , Structure-Activity Relationship
15.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 8): 1167-70, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11468408

ABSTRACT

The small GTPase ARL2 (from Mus musculus) and an effector protein, the delta subunit of human cGMP phosphodiesterase (hPDE delta), were coexpressed and copurified from Escherichia coli as a stable complex. Coexpression significantly increased the otherwise low yield of PDE delta production in E. coli. The complex, which contains ARL2 in the activated GTP-bound form, was crystallized in two forms. The first belongs to the monoclinic space group P2(1), with unit-cell parameters a = 48.1, b = 45.7, c = 74.7 A, beta = 94.0 degrees and one complex (39 kDa) in the asymmetric unit. Cryocooled crystals diffract to 2.3 A using synchrotron radiation. The micro-focused X-ray beam at beamline ID13 (ESRF) allowed the use of very small crystals, which helped to overcome twinning and enabled the identification of a molecular-replacement solution. The second form recrystallized from the first one after several months. These crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 44.5, b = 65.4, c = 104.4 A and one complex in the asymmetric unit. They diffracted to 1.8 A using synchrotron radiation.


Subject(s)
3',5'-Cyclic-GMP Phosphodiesterases/chemistry , Eye Proteins/chemistry , GTP-Binding Proteins/chemistry , Guanosine Triphosphate/chemistry , 3',5'-Cyclic-GMP Phosphodiesterases/biosynthesis , 3',5'-Cyclic-GMP Phosphodiesterases/genetics , Animals , Crystallization , Crystallography, X-Ray , Cyclic Nucleotide Phosphodiesterases, Type 6 , Escherichia coli , Eye Proteins/biosynthesis , Eye Proteins/genetics , GTP-Binding Proteins/biosynthesis , GTP-Binding Proteins/genetics , Humans , Mice , Protein Conformation
16.
Cell ; 105(2): 245-55, 2001 Apr 20.
Article in English | MEDLINE | ID: mdl-11336674

ABSTRACT

RCC1 (regulator of chromosome condensation), a beta propeller chromatin-bound protein, is the guanine nucleotide exchange factor (GEF) for the nuclear GTP binding protein Ran. We report here the 1.8 A crystal structure of a Ran*RCC1 complex in the absence of nucleotide, an intermediate in the multistep GEF reaction. In contrast to previous structures, the phosphate binding region of the nucleotide binding site is perturbed only marginally, possibly due to the presence of a polyvalent anion in the P loop. Biochemical experiments show that a sulfate ion stabilizes the Ran*RCC1 complex and inhibits dissociation by guanine nucleotides. Based on the available structural and biochemical evidence, we present a unified scenario for the GEF mechanism where interaction of the P loop lysine with an acidic residue is a crucial element for the overall reaction.


Subject(s)
Binding Sites , Cell Cycle Proteins , DNA-Binding Proteins/chemistry , Guanine Nucleotide Exchange Factors/chemistry , Nuclear Proteins/chemistry , Protein Structure, Tertiary , ran GTP-Binding Protein/chemistry , Crystallography, X-Ray , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Guanine Nucleotide Exchange Factors/genetics , Guanine Nucleotide Exchange Factors/metabolism , Guanosine Diphosphate/metabolism , Humans , Models, Molecular , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Polyelectrolytes , Polymers/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , ran GTP-Binding Protein/genetics , ran GTP-Binding Protein/metabolism
17.
FEBS Lett ; 491(1-2): 26-9, 2001 Feb 23.
Article in English | MEDLINE | ID: mdl-11226412

ABSTRACT

Pseudomonas aeruginosa is an opportunistic bacterial pathogen of great medical relevance. One of its major toxins, exoenzyme S (ExoS), is a dual function protein with a C-terminal Ras-ADP-ribosylation domain and an N-terminal GTPase activating protein (GAP) domain specific for Rho-family proteins. We report here the three-dimensional structure of the N-terminal domain of ExoS determined by X-ray crystallography to 2.4 A resolution. Its fold is all helical with a four helix bundle core capped by additional irregular helices. Loops that are known to interact with Rho-family proteins show very large mobility. Considering the importance of ExoS in Pseudomonas pathogenicity, this structure could be of interest for drug targeting.


Subject(s)
ADP Ribose Transferases/chemistry , Bacterial Proteins/chemistry , Bacterial Toxins , GTPase-Activating Proteins/chemistry , Pseudomonas aeruginosa/enzymology , Crystallography, X-Ray , Protein Structure, Tertiary , Pseudomonas aeruginosa/chemistry
18.
EMBO J ; 20(3): 570-8, 2001 Feb 01.
Article in English | MEDLINE | ID: mdl-11157763

ABSTRACT

The EMAPII (endothelial monocyte-activating polypeptide II) domain is a tRNA-binding domain associated with several aminoacyl-tRNA synthetases, which becomes an independent domain with inflammatory cytokine activity upon apoptotic cleavage from the p43 component of the multisynthetase complex. It comprises a domain that is highly homologous to bacterial tRNA-binding proteins (Trbp), followed by an extra domain without homology to known proteins. Trbps, which may represent ancient tRNA chaperones, form dimers and bind one tRNA per dimer. In contrast, EMAPII domains are monomers. Here we report the crystal structure at 1.14 Angstroms of human EMAPII. The structure reveals that the Trbp-like domain, which forms an oligonucleotide-binding (OB) fold, is related by degenerate 2-fold symmetry to the extra-domain. The pseudo-axis coincides with the dyad axis of bacterial TtCsaA, a Trbp whose structure was solved recently. The interdomain interface in EMAPII mimics the intersubunit interface in TtCsaA, and may thus generate a novel OB-fold-based tRNA-binding site. The low sequence homology between the extra domain of EMAPII and either its own OB fold or that of Trbps suggests that dimer mimicry originated from convergent evolution rather than gene duplication.


Subject(s)
Amino Acyl-tRNA Synthetases/chemistry , Amino Acyl-tRNA Synthetases/genetics , Cytokines , Neoplasm Proteins/chemistry , Neoplasm Proteins/genetics , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/genetics , Amino Acid Sequence , Animals , Dimerization , Evolution, Molecular , Humans , Models, Molecular , Molecular Mimicry , Molecular Sequence Data , Protein Structure, Quaternary , Protein Structure, Tertiary , RNA, Transfer/metabolism , Sequence Homology, Amino Acid
19.
EMBO J ; 19(17): 4555-64, 2000 Sep 01.
Article in English | MEDLINE | ID: mdl-10970849

ABSTRACT

The interferon-gamma-induced guanylate-binding protein 1 (GBP1) belongs to a special class of large GTP- binding proteins of 60-100 kDa with unique characteristics. Here we present the structure of human GBP1 in complex with the non-hydrolysable GTP analogue GppNHp. Basic features of guanine nucleotide binding, such as the P-loop orientation and the Mg(2+) co-ordination, are analogous to those of Ras-related and heterotrimeric GTP-binding proteins. However, the glycosidic bond and thus the orientation of the guanine base and its interaction with the protein are very different. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein cannot approach. This has consequences for the GTPase mechanism of hGBP1 and possibly of other large GTP-binding proteins.


Subject(s)
DNA-Binding Proteins/metabolism , GTP Phosphohydrolases/metabolism , GTP-Binding Proteins/metabolism , Guanosine Triphosphate/metabolism , Crystallography, X-Ray , DNA-Binding Proteins/chemistry , GTP-Binding Proteins/chemistry , Humans , Hydrolysis , Models, Molecular , Protein Conformation
20.
Nature ; 403(6769): 567-71, 2000 Feb 03.
Article in English | MEDLINE | ID: mdl-10676968

ABSTRACT

Interferon-gamma is an immunomodulatory substance that induces the expression of many genes to orchestrate a cellular response and establish the antiviral state of the cell. Among the most abundant antiviral proteins induced by interferon-gamma are guanylate-binding proteins such as GBP1 and GBP2. These are large GTP-binding proteins of relative molecular mass 67,000 with a high-turnover GTPase activity and an antiviral effect. Here we have determined the crystal structure of full-length human GBP1 to 1.8 A resolution. The amino-terminal 278 residues constitute a modified G domain with a number of insertions compared to the canonical Ras structure, and the carboxy-terminal part is an extended helical domain with unique features. From the structure and biochemical experiments reported here, GBP1 appears to belong to the group of large GTP-binding proteins that includes Mx and dynamin, the common property of which is the ability to undergo oligomerization with a high concentration-dependent GTPase activity.


Subject(s)
DNA-Binding Proteins/chemistry , GTP-Binding Proteins/chemistry , Amino Acid Sequence , Animals , Crystallography, X-Ray , DNA-Binding Proteins/genetics , Dynamins , Escherichia coli , GTP Phosphohydrolases/chemistry , GTP-Binding Proteins/genetics , Humans , Models, Molecular , Molecular Sequence Data , Protein Conformation , Recombinant Proteins/chemistry , Sequence Homology, Amino Acid
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