The low survival rate of European hare leverets in arable farmland: evidence from the predation experiment.

The low survival rate of leverets may significantly contribute to steep population declines and slow recovery of European hares (Lepus europaeus). However, the leveret survival rate in farmlands with different landscape structures is poorly understood, and the existing evidence comes mainly from Western Europe. In this study, we explored the survival of leveret hare dummies along linear semi-natural habitats in homogeneous Central European arable farmland during the main part of the European hare reproduction period (March-April) in 2019 and 2020. The survival rate of hare leverets during the 14-day period was only 22.2%, and all predation events were recorded during the first six days of the experiment. Mammalian predators were responsible for 53.1% of predation events, avian predators for 40.8%, and agricultural operations for 6.1%. The red fox (Vulpes vulpes) was the dominant predator in our study area and was the primary cause of leveret dummy mortality (32.7%), but it also had the highest use-intensity and visit frequency of all of the study plots. Predation by avian predators was associated with patches of lower vegetation height and cover (such as plowed fields) and during daylight hours, whereas the opposite was true for mammalian predators. We propose that improving the habitat quality of arable landscapes by increasing the proportion and quality of extensively used non-farmed habitats (e.g., set-asides, wildflower areas, extensive meadows, fallow land, and semi-natural habitats on arable land) providing cover and shelter for leverets could be an effective management measure for reducing predation risk on leverets.

Use of multivariate analysis to identify phytoplankton bioindicators of stream water quality in the monomodal equatorial agroecological zone of Cameroon.

The aquatic ecosystem is compromised by many contaminants that may reduce ecosystem functions and severely affect human health. This study aimed at determining suitable phytoplankton bioindicators of water quality for biomonitoring of freshwater streams in the monomodal agroecological zone of Cameroon. Water physicochemical and hydrological parameters, together with phytoplankton abundance and diversity, were measured from June 2016 to May 2017 along the Benoe Stream. Principal component analysis and redundancy analysis were used to determine phytoplankton spatial and temporal distribution and identify indicator species. The Shannon-Wiener diversity and Pielou's evenness indices indicated a clean to mildly polluted stream with a diverse phytoplankton community consisting of 84 genera belonging to 51 families that was dominated by the Bacillariophyta (64%), followed by Chlorophyta (13%) and Cyanophyta (10%). The total dissolved solids, electrical conductivity, stream water velocity, and discharge were the most important stream characteristics affecting the abundance of the dominant phytoplankton genera. Seasonal variations in the stream characteristics as well as spatial community distribution along an urban-small-scale farming - large-scale farming gradient were unveiled and their influence on the phytoplankton relative abundances. Increased abundance of Synedra ulna was indicative of low TDS and EC, which was the contrary for Gyrosigma baltium dominance. High Pleurosira laevis abundance was associated with the urban zone while high Diatoma sp. and Oscillatoria sp. abundances were related to the large-scale farming zone of the stream. These phytoplankton species have good potential for use as bioindicators for stream water quality monitoring in the monomodal agroecological zone.

Use of pesticides and risk perception of environmental contamination by farmers surrounding the Menoua River (West Cameroon).

Cameroonian farmers regularly use pesticides in farming to control pests, particularly along the riverbank of the Santchou agricultural area. The aim of this study was to assess the perception of farmers in West Cameroon (Santchou area) regarding the contamination risk in aquatic environments from the use of pesticides. A cross-sectional study via questionnaires was conducted among 150 selected farmers who cultivated fields along the banks of the Menoua River. Almost all the farmers (90%) used pesticides regularly, particularly herbicides, insecticides, and fungicides to combat pests. The main pesticides used were glyphosate, paraquat, dieldrin, chlorpyrifos-ethyl, copper oxide, and mancozeb. Farmers who cultivated larger areas of land or who had mixed culture crops tended to use pesticides more often (p < 0.001). The use of river water by farmers was correlated with pesticide use (p = 0.010). Most of the pesticide users (90%) did not use protective equipment when spraying the crops. The farmers' perceptions of the risk of pesticide contamination of the river water (p = 0.002) or fish (p = 0.008) did not influence their actions. A correlation was found among pesticide users who believed that there was a risk of river contamination (45%) or fish contamination (42%) and intensive pesticide application during the rainy season (61%) or non-respect of the prescribed pesticide application doses (51%; p = 0.002). Farmers who regularly or occasionally consumed fish used pesticides more often than those who did not consume fish from the river. The findings of this study emphasize the need for education of farmers in Santchou to prevent the risk of environmental contamination and health hazards from increased dietary and/or dermal pesticide exposure. Integr Environ Assess Manag 2023;19:1600-1608. © 2023 SETAC.

Concentrations of pesticide residues in fish tissue are below detectability in the Menoua River (West Cameroon).

Fresh water fish are an important source of animal protein in the diet of Africans, but despite their exposure to pollutants, particularly pesticides, in rivers and streams, there is scarcity of data on fish accumulation levels of these pollutants. The concentrations of 259 pesticide residues were measured in two highly consumed fish species (Clarias gariepinus and Oreochromis niloticus) sampled from the Menoua River, in the West Region of Cameroon. The pesticide residues were determined using QuEChERS (Quick Easy Cheap Effective Rugged and Safe) followed by gas chromatography-mass spectrometry. The results obtained show that concentrations of all pesticide residues in the samples were lower than 0.01 mg/kg and therefore below the WHO maximum residue limit for the evaluated pesticides. However, the non-detection of pesticides in the studied fish does not call for complacency as this does not imply a complete absence of pesticides. Low levels of pesticide mixtures have been shown to result in combined effects that are synergistic. There is therefore a need for further research on the possible biological effects, including endocrine disruption, growth and reproduction inhibition on the fish populations as well as dietary risk assessment on the local population. The contamination of water, sediment and other aquatic resources also remains a question for future research.

Prevalence of oral and anal human papillomavirus infection in Czech predominantly HIV-positive men having sex with men - data from a previously unreported population.

BACKGROUND: HIV-positive men who have sex with men (MSM) are more likely to experience human papillomavirus (HPV) infection. The persistent HPV infection is the major factor in the development of anal and oropharyngeal neoplasms. Data on the prevalence of anal and oral HPV in MSM are almost absent from the countries of Central and Eastern Europe. We conducted a cross-sectional study focused on the prevalence of oral and anal HPV infections and the relationship between current anal and oral HPV intrapersonal infection in a Czech population of predominantly HIV-positive MSM. METHODS: Oral gargle and anal swab samples from 205 predominantly HIV-positive MSM from the Czech Republic were analysed for HPV infection using PCR. Selected sociodemographic and clinical data were correlated with HPV detection using generalized linear models and multivariate analysis. RESULTS: HPV infection was detected in 183 (96.8%) anal and 48 (23.6%) oral samples. The most common type of HR-HPV was HPV16 in both anal (25.4%) and oral (2.5%) samples. Multiple anal HPV infections and the presence of vaccine-targeted HR-HPV types were significantly correlated with abnormal anal cytology and HIV status. CONCLUSION: The prevalence of anal HPV infection in Czech predominantly HIV-positive MSM ranks among the highest reported, while oral HPV prevalence is consistent with MSM populations. Minimal overlap of oral and anal HPV types within a patient was observed.

Forest structure determines nest box use by Central European boreal owls.

Nest boxes represent a popular tool to support secondary cavity-nesting species. Surprisingly, the benefits and limitations of nest boxes for target species in different environments are poorly understood. We performed a 3-years experimental study in two different Central European forests to evaluate nest box use and breeding performance of boreal owl (Aegolius funereus) - a species well known for its readiness to occupy nest boxes. Based on territorial vocalisation, two boreal owl populations 200 km apart were similarly abundant in their environments. However, only the boreal owl population in young restored Norway (Picea abies) and blue (Picea pungens) spruce-dominated forests on mountain plateaus readily occupied nest boxes with the occupancy reaching 8-15%. Nest boxes lost their supporting function for the boreal owl in mature Scots pine (Pinus sylvestris)-dominated forests in the lowland, where the nest box occupancy reached 0-1%. As a result, the population of boreal owls that used nest boxes in the young restored forests produced 10 times more fledglings than the population inhabiting mature Scots pine forests. We explain the differences by the contrasting availability of natural tree cavities between the two study areas being much higher in mature Scots pine forests. For the first time, this study documents differences in nest box use despite similar food availability and population size of the target species. The study provides the findings-related recommendations for deploying nest boxes for boreal owls and points out a general lack of practical guides.

Intestinal mycobiome associated with diagnosis of inflammatory bowel disease based on tissue biopsies.

Analysis of mycobiome from formalin-fixed, paraffin-embedded (FFPE) biopsies should preferentially detect only fungi which are actually present in the intestine wall, in contrast to stool samples, which are limited by the diet composition. Next generation sequencing provides the advantage of analyzing many species from a single sample. Consequently, canonical correspondence analysis divided fungal genera present in FFPE intestinal tissues into three well-defined experimental groups (negative controls - NC, Crohn's disease - CD, ulcerative colitis - UC). Simultaneously, the analysis showed that particular fungal genera are associated with these experimental groups and several fungal genera occurred in all experimental groups equally. Our results also showed a noticeable increase of Ascomycota proportion from NC, through CD to UC. Fungal genera Malassezia, Cladosporium and Toninia occurred in all experimental groups assuming that they are common components of the intestinal mycobiome. Other fungal genera found only in the NC experimental group were non-pathogenic and might bring some benefits. In contrast, CD and UC samples were characterized by an accumulation of genera with inhibitive effects on growth of other fungal genera and the presence of opportunistic pathogens. Furthermore, a decrease in the fungal genus Malassezia in inflammatory tissues was observed; Specifically, the UC experimental group showed a connection between the presence of Candida and seven time's lower amounts of Malassezia (compared to amounts found in NC). The CD experimental group was characterized by the simultaneous presence of Engyodontium album with Lecanicillium, and indicates a possible pathogenic effect of Ramularia in disease development. LAY SUMMARY: Mycobiome analysis of formalin-fixed and paraffin-embedded biopsies may highlight actual fungal genera composition in the intestinal wall. Interestingly, experimental groups of Crohn's disease and ulcerative colitis clearly differed by structure of their mycobiomes.

Spatial scaling of plant and bird diversity from 50 to 10,000 ha in a lowland tropical rainforest.

While there are numerous studies of diversity patterns both within local communities and at regional scales, the intermediate scale of tens to thousands of km2 is often neglected. Here we present detailed local data on plant communities (using 20 × 20 m plots) and bird communities (using point counts) for a 50 ha ForestGEO plot in lowland rainforest at Wanang, Papua New Guinea. We compare these local diversity patterns with those documented in the surrounding 10,000 ha of lowland rainforest. Woody plant species richness was lower within 50 ha (88% of 10,000 ha richness), even when both were surveyed with identical sampling effort. In contrast, bird communities exhibited identical species accumulation patterns at both spatial scales. Similarity in species composition (Chao-Jaccard) remained constant while similarity in dominance structure (Bray-Curtis) decreased with increased distance between samples across the range from < 1 to 13.8 km for both plant and bird communities. The similarity decay was more rapid in plants, but in both cases was slow. The results indicate low to zero beta-diversity at the spatial scale represented here, particularly for birds but also for woody plants. A 50 ha plot provided a highly accurate representation of broader-scale diversity and community composition within 10,000 ha for birds, and a relatively good representation for woody plants. This suggests potential for wider generalization of data from ForestGEO plots which are almost always locally unreplicated, at least for those in lowland tropical forest.

Behavioural plasticity of motor personality traits in the common vole under three-day continual observation in a test box.

In animals, behavioural personality traits have been well-documented in a wide array of species. However, these traits, different between individuals, are not completely stable in individuals. They show behavioural plasticity like many other phenotypic traits. This plasticity is able to overcome some weak aspects of personality trait behavioural strategy. In the present study, we examined the relationship between motor personality traits and behavioural plasticity in the common vole (Microtus arvalis) using a PhenoTyper (PT) box (Noldus). During a three-day test, four behavioural motor activity parameters were monitored in 47 voles: distance moved, (loco)motion duration, motion change frequency, sprint duration. Consistency repeatability (RC) of the parameters from the PT test was very high, with all values ≥ 0.91. To select the best linear mixed-effect models (LMMs), several predictors (test day, sex, body weight) were tested. Only test day had a significant effect on the dependent variables and other predictors did not improve the LMMs. Further, we found significant effects of random intercepts (motor personality traits) and slopes (behavioural plasticity), as well as significant negative correlations between them for all behavioural parameters. Our results indicate that motor personality traits were connected with behavioural plasticity. Moreover, we revealed a significant positive correlation between the random slopes of (loco)motion duration and motion change frequency. This relationship could indicate some central plasticity of motor personality traits. In conclusion, negative correlations between the motor personality traits and the behavioural plasticity demonstrate expression of convergent tendency from both opposite trait values. This corresponds with different ideas on ability to compensate personality effects or to prepare for potential future conditions. In the laboratory, plasticity of personality traits take place whenever an animal is placed e. g. in a breeding box for the first time or is left for a long time in an experimental apparatus.

Large-scale spatial patterns of small-mammal communities in the Mediterranean region revealed by Barn owl diet.

Due to mainly opportunistic hunting behaviour of Barn owl can be its diet composition used for assessing local structure of small-mammal community. We evaluated the structure of small-mammal communities in the Mediterranean region by analysing Barn owl diet using own pellets and literature data (85 localities comprising 182,343 prey individuals). Contrary to widely accepted macroecological theory, we found a latitudinal increase of small-mammal alpha diversity, a less distinct west-east increase and lower diversity on islands. The mean prey weight decreased with increasing latitude, while on islands it decreased with increasing island area. The mean prey weight on islands was further negatively affected by mean land modification by human and positively affected by its range. The diet diversity on islands was not affected either by island area or its distance from the mainland. Its composition largely conformed to the main pattern pronounced over whole the region: an unexpected homogeneity of small-mammal community structure. Despite high beta diversity and large between-sample variation in species composition, Crocidura (+ Suncus etruscus) and murids (Apodemus, Mus, Rattus, in marginal regions partly replaced by gerbillids, Meriones or Microtus) composed more than 90% of owl prey in 92% of samples. Peak abundances of these widespread species are associated with a dynamic mosaic of dense patches of sparse herb vegetation and evergreen sclerophyllous shrublands interspersing areas of human activity, the dominant habitat of the inner Mediterranean and richest food resource for foraging Barn owls. The respective small-mammal species can be looked upon as invasive elements accompanying large scale human colonization of the region since the Neolithic and replacing original island biota. Our study documented that desertification of the Mediterranean played an important role in shaping inverse latitudinal gradient in diversity of small-mammals that contradicts to widely accepted mecroecological theory.

Evaluation of Spatio-Temporal Patterns of Predation Risk to Forest Grouse Nests in the Central European Mountain Regions.

We evaluated the spatiotemporal patterns of predation risk on black grouse nests using artificial nests that were monitored by camera traps in mountain areas with a small extant (Ore Mts.) and already extinct (Jeseníky Mts.) black grouse population. The overall predation rate of artificial nests was 56% and we found significant differences in survival rate courses over time between both study areas (68% Ore Mts. vs. 41%, Jeseníky Mts.). Within the time required for successful egg incubation (25 days), nest survival probability was 0.32 in the Ore Mts. and 0.59 in Jeseníky Mts. The stone marten (Martes foina) was the primary nest predator in both study areas (39% in total), followed by common raven (Corvus corax, 25%) and red fox (Vulpes vulpes, 22%). The proportion of depredated nests did not differ between habitat types (i.e., open forest interior, clearing, forest edge), but we recorded the effect of interaction of study area and habitat. In Ore Mts., the main nest predator was common raven with seven records (37%). The Eurasian jay (Garrulus glandarius) was responsible for most predation attempts in Jeseníky Mts. (five records, i.e., 83%), while in the Ore Mts., most predation attempts were done by red fox (six records, i.e., 38%).

Factors Affecting Growth of Tengmalm's Owl (Aegolius funereus) Nestlings: Prey Abundance, Sex and Hatching Order.

In altricial birds, energy supply during growth is a major predictor of the physical condition and survival prospects of fledglings. A number of experimental studies have shown that nestling body mass and wing length can vary with particular extrinsic factors, but between-year observational data on this topic are scarce. Based on a seven-year observational study in a central European Tengmalm's owl population we examine the effect of year, brood size, hatching order, and sex on nestling body mass and wing length, as well as the effect of prey abundance on parameters of growth curve. We found that nestling body mass varied among years, and parameters of growth curve, i.e. growth rate and inflection point in particular, increased with increasing abundance of the owl's main prey (Apodemus mice, Microtus voles), and pooled prey abundance (Apodemus mice, Microtus voles, and Sorex shrews). Furthermore, nestling body mass varied with hatching order and between sexes being larger for females and for the first-hatched brood mates. Brood size had no effect on nestling body mass. Simultaneously, we found no effect of year, brood size, hatching order, or sex on the wing length of nestlings. Our findings suggest that in this temperate owl population, nestling body mass is more sensitive to prey abundance than is wing length. The latter is probably more limited by the physiology of the species.

Regional patterns of postglacial changes in the Palearctic mammalian diversity indicate retreat to Siberian steppes rather than extinction.

We examined the presence of possible Recent refugia of Pleistocene mammalian faunas in Eurasia by analysing regional differences in the mammalian species composition, occurrence and extinction rates between Recent and Last Glacial faunas. Our analyses revealed that most of the widespread Last Glacial species have survived in the central Palearctic continental regions, most prominently in Altai-Sayan (followed by Kazakhstan and East European Plain). The Recent Altai-Sayan and Kazakhstan regions show species compositions very similar to their Pleistocene counterparts. The Palearctic regions have lost 12% of their mammalian species during the last 109,000 years. The major patterns of the postglacial changes in Palearctic mammalian diversity were not extinctions but rather radical shifts of species distribution ranges. Most of the Pleistocene mammalian fauna retreated eastwards, to the central Eurasian steppes, instead of northwards to the Arctic regions, considered Holocene refugia of Pleistocene megafauna. The central Eurasian Altai and Sayan mountains could thus be considered a present-day refugium of the Last Glacial biota, including mammals.

Ecological structure of recent and last glacial mammalian faunas in northern Eurasia: the case of Altai-Sayan refugium.

Pleistocene mammalian communities display unique features which differ from present-day faunas. The paleocommunities were characterized by the extraordinarily large body size of herbivores and predators and by their unique structure consisting of species now inhabiting geographically and ecologically distinct natural zones. These features were probably the result of the unique environmental conditions of ice age ecosystems. To analyze the ecological structure of Last Glacial and Recent mammal communities we classified the species into biome and trophic-size categories, using Principal Component analysis. We found a marked similarity in ecological structure between Recent eastern Altai-Sayan mammalian assemblages and comparable Pleistocene faunas. The composition of Last Glacial and Recent eastern Altai-Sayan assemblages were characterized by the occurrence of large herbivore and predator species associated with steppe, desert and alpine biomes. These three modern biomes harbor most of the surviving Pleistocene mammals. None of the analyzed Palearctic Last Glacial faunas showed affinity to the temperate forest, taiga, or tundra biome. The Eastern part of the Altai-Sayan region could be considered a refugium of the Last Glacial-like mammalian assemblages. Glacial fauna seems to persist up to present in those areas where the forest belt does not separate alpine vegetation from the steppes and deserts.

Group display in the socially monogamous Northern Double-collared Sunbird (Cinnyris reichenowi).

Several sunbird species (Nectariniidae) exhibit group display, but the function of this behaviour still remains unclear. We test two hypotheses (reproductive tactic and joint territory defence) to explain the function of this behaviour using data gathered on Northern Double-collared Sunbirds (Cinnyris reichenowi) from the Cameroon Mountains. Sunbirds exhibited group display throughout the breeding cycle. Groups of birds were mainly comprised of neighbouring pairs aggregated at territory boundaries. The frequency of group displays varied significantly among individuals and over the breeding cycle, with the highest frequency during the pre-breeding period and the lowest during egg-laying (∼female's fertile period). Time spent on group display was significantly longer at the end of breeding. Off-territory forays were recorded for both males and females, males significantly increased the time spent on these forays during incubation. Extra-pair copulations were recorded only in five cases for females (4%) suggesting that most off-territory forays were motivated by feeding on nectar in neighbouring territories. Therefore, we suggest that the behaviour is used for joint territory defence rather than as an information centre for choosing mates for extra-pair copulations. Its function for choosing primary mates is also unlikely, because group displays were mainly observed in complete pairs.