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1.
BMC Biotechnol ; 12: 15, 2012 Apr 30.
Article in English | MEDLINE | ID: mdl-22546148

ABSTRACT

BACKGROUND: There is an increasing need for quantitative technologies suitable for molecular detection in a variety of settings for applications including food traceability and monitoring of genetically modified (GM) crops and their products through the food processing chain. Conventional molecular diagnostics utilising real-time polymerase chain reaction (RT-PCR) and fluorescence-based determination of amplification require temperature cycling and relatively complex optics. In contrast, isothermal amplification coupled to a bioluminescent output produced in real-time (BART) occurs at a constant temperature and only requires a simple light detection and integration device. RESULTS: Loop mediated isothermal amplification (LAMP) shows robustness to sample-derived inhibitors. Here we show the applicability of coupled LAMP and BART reactions (LAMP-BART) for determination of genetically modified (GM) maize target DNA at low levels of contamination (0.1-5.0% GM) using certified reference material, and compare this to RT-PCR. Results show that conventional DNA extraction methods developed for PCR may not be optimal for LAMP-BART quantification. Additionally, we demonstrate that LAMP is more tolerant to plant sample-derived inhibitors, and show this can be exploited to develop rapid extraction techniques suitable for simple field-based qualitative tests for GM status determination. We also assess the effect of total DNA assay load on LAMP-BART quantitation. CONCLUSIONS: LAMP-BART is an effective and sensitive technique for GM detection with significant potential for quantification even at low levels of contamination and in samples derived from crops such as maize with a large genome size. The resilience of LAMP-BART to acidic polysaccharides makes it well suited to rapid sample preparation techniques and hence to both high throughput laboratory settings and to portable GM detection applications. The impact of the plant sample matrix and genome loading within a reaction must be controlled to ensure quantification at low target concentrations.


Subject(s)
DNA, Plant/analysis , Luminescent Measurements/methods , Nucleic Acid Amplification Techniques/methods , Plants, Genetically Modified/genetics , Cloning, Molecular , DNA, Plant/chemistry , DNA, Plant/isolation & purification , Food Analysis , Food, Genetically Modified , Genome, Plant , Real-Time Polymerase Chain Reaction , Regression Analysis , Sensitivity and Specificity , Zea mays/genetics
2.
Anal Bioanal Chem ; 392(1-2): 29-35, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18365181

ABSTRACT

The characterization and localization of proteins and other organic components in the complex stratigraphy of paintings is crucial for authentication and studies of painting techniques. With this aim we have developed a new ultrasensitive immunochemical procedure for the detection of the protein ovalbumin (chicken egg white albumin), present in binding media or varnishes, in painting cross-sections. The technique is based on chemiluminescence imaging detection combined with optical microscopy, and allowed the sensitive localization of the target protein in cross-sections with high spatial resolution. In order to evaluate its performance, the method was first applied to standard samples (also containing different common pigments), then used for the localization of ovalbumin in samples obtained from a Renaissance wood painting.


Subject(s)
Luminescent Measurements/methods , Ovalbumin/analysis , Paint/analysis , Paintings , Animals , Antibodies/chemistry , Antibodies/immunology , Antibody Specificity , Coloring Agents/analysis , Egg Proteins/analysis , Egg Proteins/immunology , Horseradish Peroxidase , Immunochemistry/methods , Light , Microscopy/methods , Ovalbumin/immunology , Spectrophotometry, Infrared , Spectrophotometry, Ultraviolet
3.
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