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1.
Case Rep Infect Dis ; 2024: 7219952, 2024.
Article En | MEDLINE | ID: mdl-38737750

Over 200 different serogroups of Vibrio cholerae based on O-polysaccharide specificity have been described worldwide, including the two most important serogroups, O1 and O139. Non-O1/non-O139 V. cholerae serogroups generally do not produce the cholera-causing toxin but do sporadically cause gastroenteritis and extra-intestinal infections. Recently, however, bloodstream infections caused by non-O1/non-O139 V. cholerae are being increasingly reported, and these infections are associated with high mortality in immunocompromised hosts. We describe a case of non-O1/non-O139 V. cholerae bacteremia in a patient with autoimmune pancreatitis and stenosis of the intra- and extrahepatic bile ducts. The clinical manifestations of bacteremia were fever and mild digestive symptoms. The blood cultures showed V. cholerae, which was identified as a non-O1, non-O139 serogroup by slide agglutination tests and PCR. The bloodstream infection of the patient was likely caused by the consumption of contaminated seafood at a banquet. The patient recovered after the administration of a third-generation cephalosporin. Non-O1/non-O139 V. cholerae infection presents with or without gastrointestinal manifestations; close attention should be paid to the possibility of disseminated non-O1/non-O139 V. cholerae infection in high-risk patients.

2.
J Agric Food Chem ; 72(7): 3572-3583, 2024 Feb 21.
Article En | MEDLINE | ID: mdl-38334304

In this study, we aimed to explore the protective effects of Bifidobacterium in colitis mice and the potential mechanisms. Results showed that Bifidobacterium breve (B. breve) effectively colonized the intestinal tract and alleviated colitis symptoms by reducing the disease activity index. Moreover, B. breve mitigated intestinal epithelial cell damage, inhibited the pro-inflammatory factors, and upregulated tight junction (TJ)-proteins. Gut microbiota and metabolome analysis found that B. breve boosted bile acid-regulating genera (such as Bifidobacterium and Clostridium sensu stricto 1), which promoted bile acid deconjugation in the intestine. Notably, cholic acid (CA) was closely associated with the expression levels of inflammatory factors and TJ-proteins (p < 0.05). Our in vitro cell experiments further confirmed that CA (20.24 ± 4.53 pg/mL) contributed to the inhibition of lipopolysaccharide-induced tumor necrosis factor-α expression (49.32 ± 5.27 pg/mL) and enhanced the expression of TJ-proteins (Occludin and Claudin-1) and MUC2. This study suggested that B. breve could be a probiotic candidate for use in infant foods.


Bifidobacterium breve , Colitis , Gastrointestinal Microbiome , Humans , Infant , Animals , Mice , Bifidobacterium breve/genetics , Cholic Acid/adverse effects , Colitis/chemically induced , Colitis/genetics , Colitis/microbiology , Intestinal Mucosa , Bifidobacterium , Inflammation , Mice, Inbred C57BL , Disease Models, Animal , Dextran Sulfate/adverse effects
3.
Environ Sci Pollut Res Int ; 31(1): 262-279, 2024 Jan.
Article En | MEDLINE | ID: mdl-38015396

The accurate and efficient prediction of chlorophyll-a (Chl-a) concentration is crucial for the early detection of algal blooms in reservoirs. Nevertheless, predicting Chl-a concentration in multivariate time series poses a significant challenge due to the complex interrelationships within the aquatic environment and the discrete and non-stationary nature of online monitoring of water quality data. To address the aforementioned issue, this paper proposes a novel prediction model named SGMD-KPCA-BiLSTM (SKB) for predicting Chl-a concentration. The model combines two-stage data processing and machine learning (ML). To capture nonlinear relationships in multivariate time series data, the optimal data subset is determined by combining symplectic geometry mode decomposition (SGMD) and kernel principal component analysis (KPCA). This subset is then input into a bidirectional long short-term memory (BiLSTM) model, and the model's hyperparameters are optimized using the sparrow search algorithm (SSA) to improve the accuracy of predictions. The performance of the model was evaluated at Qiaodian Reservoir in Shandong, China. To assess its superiority, the evaluation criteria included the root mean square error (RMSE), mean absolute percentage error (MAPE), mean absolute error (MAE), coefficient of determination (R2), frequency histograms of the prediction error, and the Taylor diagram. The prediction performance of five single models, namely the back-propagation (BP) neural network, support vector regression (SVR), long short-term memory (LSTM), convolutional neural network with long short-term memory (CNN-LSTM), and BiLSTM, as well as three hybrid models, namely SGMD-LSTM, SGMD-KPCA-LSTM, and SGMD-BiLSTM, were compared against the SKB model. The results demonstrated that the SKB model performs best in predicting Chl-a concentration (R2 = 96.19%, RMSE = 1.05, MAE = 0.65, MAPE = 0.08). It significantly reduced the prediction error compared to other models for comparison. Furthermore, the multi-step predictive capabilities of the SKB model are also discussed. The analysis shows a decline in predictive performance with larger prediction time steps, and the SKB model exhibits slightly superior performance compared to the other model at corresponding prediction intervals. The model has significant advantages in terms of its ability to accurately predict the non-smooth and nonlinear Chl-a sequences observed by the online monitoring system. This study presents a potential solution for controlling and preventing reservoir eutrophication, as well as an innovative approach for predicting water quality.


Chlorophyll , Machine Learning , Chlorophyll A , Algorithms , China , Forecasting
4.
Microbiome ; 11(1): 262, 2023 Nov 25.
Article En | MEDLINE | ID: mdl-38001551

BACKGROUND: Diet-induced dyslipidemia is linked to the gut microbiota, but the causality of microbiota-host interaction affecting lipid metabolism remains controversial. Here, the humanized dyslipidemia mice model was successfully built by using fecal microbiota transplantation from dyslipidemic donors (FMT-dd) to study the causal role of gut microbiota in diet-induced dyslipidemia. RESULTS: We demonstrated that FMT-dd reshaped the gut microbiota of mice by increasing Faecalibaculum and Ruminococcaceae UCG-010, which then elevated serum cholicacid (CA), chenodeoxycholic acid (CDCA), and deoxycholic acid (DCA), reduced bile acid synthesis and increased cholesterol accumulation via the hepatic farnesoid X receptor-small heterodimer partner (FXR-SHP) axis. Nevertheless, high-fat diet led to decreased Muribaculum in the humanized dyslipidemia mice induced by FMT-dd, which resulted in reduced intestinal hyodeoxycholic acid (HDCA), raised bile acid synthesis and increased lipid absorption via the intestinal farnesoid X receptor-fibroblast growth factor 19 (FXR-FGF19) axis. CONCLUSIONS: Our studies implicated that intestinal FXR is responsible for the regulation of lipid metabolism in diet-induced dyslipidemia mediated by gut microbiota-bile acid crosstalk. Video Abstract.


Bile Acids and Salts , Gastrointestinal Microbiome , Animals , Mice , Bile Acids and Salts/metabolism , Diet, High-Fat , Gastrointestinal Microbiome/physiology , Lipid Metabolism , Liver/metabolism , Mice, Inbred C57BL
5.
Am J Geriatr Psychiatry ; 31(12): 1091-1099, 2023 12.
Article En | MEDLINE | ID: mdl-37821299

OBJECTIVE: Older adults are prone to the negative effects of exposure to violence on their mental health. This study aimed to examine the impact of exposure to violence during social unrest and the role of resilience in the mental health of older people. DESIGN: A total of 1,203 people aged 65 years or older were randomly selected for a telephone survey using the random digit dialing numbering method in Hong Kong. MEASUREMENTS: A 13-item scale was developed to measure exposure to violence. The Chinese versions of the Connor-Davidson Resilience Scale and the Startle, Physiological Arousal, Anger, and Numbness scales for measuring mental health status were adopted in the survey. RESULTS: The results showed that the more frequently older people were exposed to information, the more negative mental health status they had. However, exposure to witnessing and experiencing violence was not significantly associated with mental health status. Older adults' level of resilience had a moderating effect between exposure to information and mental health, whereas the effect of exposure to information on mental health was stronger for respondents with lower resilience. CONCLUSION: This study showed that emotional problems caused by exposure to related information among older people should be properly addressed during massive social unrest and conflict. Their resilience capacity is an important moderating factor. Future interventions and support services should focus on enhancing the resilience of older people to better equip them with overcoming problems related to macro-social issues.


Exposure to Violence , Resilience, Psychological , Humans , Aged , Mental Health , Hong Kong/epidemiology , Violence
6.
Article En | MEDLINE | ID: mdl-37835127

The phenomenon of 'older people migrating along' (OPMA) with adult children is a unique outcome of social changes that have occurred in China. These individuals generally experience different challenges and needs associated with mental wellbeing. However, there is limited research on the relationship between the social capital and mental health of OPMA in China. This study aims to examine the mental health status of OPMA and the effects of bonding social capital and bridging social capital on their mental wellbeing in China by conducting a quantitative research survey among 399 OPMA participants. We found that bonding social capital correlated to only one indicator of mental wellbeing, subjective happiness. Bridging social capital had significant relationships with four mental health indicators, namely, the 12-item General Health Questionnaire (GHQ-12), Geriatric Depression Scale (GDS), subjective happiness, and life satisfaction. Through strengthening bridging social capital, these older adults can benefit from more opportunities for participation in formal or informal organizations in their communities and improve their mental wellbeing.


Social Capital , Humans , Aged , Adult Children , Mental Health , China
7.
J Colloid Interface Sci ; 652(Pt B): 1282-1296, 2023 Dec 15.
Article En | MEDLINE | ID: mdl-37659301

In this study, a new Z-scheme MgFe2O4/Bi2WO6 heterojunction was successfully prepared by hydrothermal and wet ball milling process. The results of the study showed that after 90 min of visible light exposure, the photocatalytic degradation of tetracycline hydrochloride (TCH) by 25%-MgFe2O4/Bi2WO6 heterojunction was as high as 95.82%, and the highest photocatalytic rate (0.0281 min-1) was 4.61 and 3.43 times higher than that of pure Bi2WO6 (0.0061 min-1) and MgFe2O4 (0.0082 min-1), respectively. Furthermore, spin-polarized density functional theory (DFT) calculations were performed to provide additional evidence of the presence of a Z-scheme charge transfer mechanism between MgFe2O4 and Bi2WO6. We investigated the effects of initial TCH concentration, pH, coexisting ions and different water sources on the efficiency of photocatalytic degradation of TCH in composite samples. The recovery experiments demonstrated that the MgFe2O4/Bi2WO6 composites had good stability and repeatability. A series of experimental results showed that 25%-MgFe2O4/Bi2WO6 had a larger specific surface area, better ultraviolet and visible absorbance, superior charge transfer and higher efficiency of photogenerated electron-hole pair separation. This paper provides new ideas for the design and preparation of new Z-scheme heterojunctions and has great prospects for practical applications in the field of wastewater treatment.

8.
Chronobiol Int ; 40(7): 952-960, 2023 07 03.
Article En | MEDLINE | ID: mdl-37491913

Chronotype has received increasing research attention. However, there remains some confusion about the influence of gender, age, sleep quality, insomnia severity, longitude, and latitude on the consistency of the chronotype measured by the different tools. Chronotype measurement indicators were collected from 421 participants. The midpoint of sleep for actigraphy (MSF_A), sleep diary (MSF_D), and Munich Chronotype Questionnaire (MCTQ) (MSFsc) on free days and the Morningness-Eveningness Questionnaire (rMEQ) scores were used to measure the chronotype. In addition, demographic information, Pittsburgh Sleep Quality Index (PSQI), and Insomnia Severity Index (ISI) were also collected. A significant correlation was identified between the questionnaires (MSF_D, MSFsc, rMEQ) and actigraphy (MSF_A) as measures of chronotype. MSF_A was associated with sleep latency and sleep disturbance in the PSQI subdimensions. The correlation between MS_D and sleep disturbance was significant. Both rMEQ and MSFsc were significantly correlated with PSQI (total scores and daytime dysfunction) and ISI. The consistency of all chronotype measurements for the questionnaires and actigraphy was influenced by gender. Among them, MSF_D is also affected by age, while only the latitude and sleep disturbance effect was found in the MSFsc. The influence of age, gender, sleep quality, and latitude should be emphasized when measuring the chronotype using self-reported methods.


Sleep Initiation and Maintenance Disorders , Sleep Wake Disorders , Humans , Circadian Rhythm , Sleep Quality , Chronotype , Time Factors , Sleep , Surveys and Questionnaires
9.
Food Chem ; 422: 136087, 2023 Oct 01.
Article En | MEDLINE | ID: mdl-37141757

Ethylene production is essential for improving cold resistance of postharvest tomatoes. However, the role of ethylene signaling pathway in maintaining fruit quality during long-term cold storage remains poorly understood. Here, we demonstrated that a partial loss of function in ethylene signaling by mutation of Ethylene Response Factor 2 (SlERF2), worsened fruit quality during cold storage, as determined by visual characterization, and physiological analyses of membrane damage and reactive oxygen species metabolism. In addition, the transcriptions of genes related to abscisic acid (ABA) biosynthesis and signaling were also altered by SlERF2 gene in response to cold storage. Furthermore, mutation of SlERF2 gene compromised cold-induced expression of genes in the C-repeat/dehydration-responsive binding factor (CBF) signaling pathway. Therefore, it's concluded that an ethylene signaling component, SlERF2 contributed to the regulations of ABA biosynthesis and signaling, as well as CBF cold signaling pathway, ultimately affecting the fruit quality during long-term cold storage of tomatoes.


Solanum lycopersicum , Solanum lycopersicum/genetics , Fruit/chemistry , Ethylenes/metabolism , Signal Transduction , Cold Temperature , Gene Expression Regulation, Plant
10.
Abdom Radiol (NY) ; 48(4): 1372-1382, 2023 04.
Article En | MEDLINE | ID: mdl-36892608

PURPOSE: To examine the potential of whole-tumor radiomics analysis of T2-weighted imaging (T2WI) in differentiating neuroblastoma (NB) from ganglioneuroblastoma/ganglioneuroma (GNB/GN) in children. MATERIALS AND METHODS: This study included 102 children with peripheral neuroblastic tumors, comprising 47 NB patients and 55 GNB/GN patients, which were randomly divided into a training group (n = 72) and a test group (n = 30). Radiomics features were extracted from T2WI images, and feature dimensionality reduction was applied. Linear discriminant analysis was used to construct radiomics models, and one-standard error role combined with leave-one-out cross-validation was used to choose the optimal radiomics model with the least predictive error. Subsequently, the patient age at initial diagnosis and the selected radiomics features were incorporated to construct a combined model. The receiver operator characteristic (ROC) curve, decision curve analysis (DCA) and clinical impact curve (CIC) were applied to evaluate the diagnostic performance and clinical utility of the models. RESULTS: Fifteen radiomics features were eventually chosen to construct the optimal radiomics model. The area under the curve (AUC) of the radiomics model in the training group and test group was 0.940 [95% confidence interval (CI) 0.886, 0.995] and 0.799 (95%CI 0.632, 0.966), respectively. The combined model, which incorporated patient age and radiomics features, achieved an AUC of 0.963 (95%CI 0.925, 1.000) in the training group and 0.871 (95%CI 0.744, 0.997) in the test group. DCA and CIC demonstrated that the radiomics model and combined model could provide benefits at various thresholds, with the combined model being superior to the radiomics model. CONCLUSION: Radiomics features derived from T2WI, in combination with the age of the patient at initial diagnosis, may offer a quantitative method for distinguishing NB from GNB/GN, thus aiding in the pathological differentiation of peripheral neuroblastic tumors in children.


Ganglioneuroblastoma , Ganglioneuroma , Neuroblastoma , Humans , Child , Ganglioneuroblastoma/diagnostic imaging , Ganglioneuroblastoma/pathology , Ganglioneuroma/diagnostic imaging , Ganglioneuroma/pathology , Magnetic Resonance Imaging/methods , Neuroblastoma/diagnostic imaging , Diagnosis, Differential , Retrospective Studies
11.
Mol Genet Genomics ; 297(3): 843-858, 2022 May.
Article En | MEDLINE | ID: mdl-35441900

Phosphorus (P) deficiency is one of the major limitations for soybean production. Moreover, it has been well reported P and other mineral elements function interdependently or antagonistically to control nutrients homeostasis in plants. Thus, it is urgently needed to understand the genetic mechanism of the accumulation of mineral elements in response to low-P stress. In this study, to identify single nucleotide polymorphisms (SNPs) and candidate genes controlling the accumulation of mineral elements suffering low-P stress in seedling stage of soybean plants, we measured concentrations of mineral elements, including P, Zn, Fe, Mn, Mg and Ca, in shoots of 211 soybean accessions under normal phosphorus (+P) and low phosphorus (-P) conditions in two hydroponic experiments. And genome-wide association study (GWAS) using high density NJAU 355K SoySNP array and concentrations of five of these mineral elements except P was performed. A total of 36 SNPs distributed on 13 chromosomes were identified to be significantly associated with low-P tolerance, and nine SNPs on chromosome 10 formed a SNP cluster. Meanwhile, the candidate gene GmFeB1 was found to serve as a negative regulator element involved in soybean P metabolism and the haplotype1 (Hap1) of GmFeB1 showed significantly higher shoot Fe concentration under -P condition than that of Hap2. In summary, we uncover 36 SNPs significantly associated with shoot mineral elements concentrations under different P conditions and a soybean low-P related gene GmFeB1, which will provide additional genetic information for soybean low-P tolerance and new gene resources for P-efficient soybean varieties breeding.


Genome-Wide Association Study , Glycine max , Minerals , Phosphorus , Plant Breeding , Polymorphism, Single Nucleotide , Glycine max/genetics
12.
Mol Breed ; 42(5): 29, 2022 May.
Article En | MEDLINE | ID: mdl-37309533

Phosphorus (P) is one of the important mineral elements required for plant growth and development. However, because of the low mobility in soil, P deficiency has been an important factor limiting soybean production. Here, we identified 14 PHR (phosphate starvation response) genes in soybean genome and verified that two previously unreported GmPHR members, GmPHR14 and GmPHR32, were involved in low-P stress tolerance in soybean. GmPHR14 and GmPHR32 were present in two diverged branches of the phylogenic tree. Both genes were highly expressed in roots and root nodules and were induced by P deficiency. GmPHR14 and GmPHR32 both were expressed in the nucleus. The 211 amino acids in the N terminus of GmPHR32 were found to be required for the transcriptional activity. Overexpressing GmPHR14 or GmPHR32 in soybean hairy roots significantly increased roots and shoots dry weight under low-P condition, and overexpressing GmPHR14 additionally significantly increased roots P concentration under low-P condition. GmPHR14 and GmPHR32 were polymorphic in soybean population and the elite haplotype2 (Hap2) for both genes was preferentially present in improved cultivars and showed significantly higher shoots dry weight under low-P condition than the other two haplotypes. These results suggested GmPHR14 and GmPHR32 both positively regulated low-P responses in soybean, and would shed light on the molecular mechanism of low-P stress tolerance. Furthermore, the identified elite haplotypes would be useful in P-efficient soybean breeding. Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-022-01301-z.

13.
Front Nutr ; 9: 1093277, 2022.
Article En | MEDLINE | ID: mdl-36687667

Introduction: Tiger nut (TN) is recognized as a high potential plant which can grow in well-drained sandy or loamy soils and provide food nutrients. However, the overground tubers of TN remain unutilized currently, which limits the value-added utilization and large-area cultivation of this plant. Methods: In the present study, the overground tubers of TN were subjected to enzymatic hydrolysis to produce fermentable sugars for biofuels production. Steam explosion (SE) was applied to modify the physical-chemical properties of the overground tubers of TN for enhancing its saccharification. Results and discussion: Results showed that SE broke the linkages of hemicellulose and lignin in the TN substrates and increased cellulose content through removal of hemicellulose. Meanwhile, SE cleaved inner linkages within cellulose molecules, reducing the degree of polymerization by 32.13-77.84%. Cellulose accessibility was significantly improved after SE, which was revealed visibly by the confocal laser scanning microscopy imaging techniques. As a result, enzymatic digestibility of the overground tubers of TN was dramatically enhanced. The cellulose conversion of the SE treated TN substrates reached 38.18-63.97%, which was 2.5-4.2 times higher than that without a SE treatment. Conclusion: Therefore, SE pretreatment promoted saccharification of the overground tubers of TN, which paves the way for value-added valorization of the TN plants.

14.
Int J Gen Med ; 14: 6009-6019, 2021.
Article En | MEDLINE | ID: mdl-34588805

BACKGROUND: RORγt+Foxp3+ (Th17-like) Tregs are a plastic Treg subset implicated in immune-related diseases; however, the mechanism of Treg phenotypic transformation in malignant pleural effusion (MPE) has not been elucidated. METHODS: The percentage of CD4+CD25+Foxp3+Helios+ and RORγt+Foxp3+ Tregs from peripheral blood and pleural effusion mononuclear cells were measured. The level of interferon regulatory factor 4 (IRF4) mRNA expression was detected by quantitative real-time reverse transcription polymerase chain reaction. The effects of IRF4 on the induction of Tregs from patients with non-small cell lung cancer (NSCLC) were evaluated in vitro. Correlation assays between IRF4 expression and the frequency of RORγt+Foxp3+ Tregs were performed. RESULTS: The frequency of CD4+CD25+Foxp3+Helios+ Tregs and CD4+RORγt+ Th17 cells was both increased in the MPE of NSCLC patients. The group of double-positive Foxp3+RORγt+ Treg phenotype were identified in the pleural effusion. A significant increase in the frequency of Foxp3+RORγt+ Tregs was found in MPE compared with the non-malignant pleural effusion (NPE). Compared to NPE, the relative level of IRF4 expression was increased in the MPE. IRF4 expression was positively associated with the frequency of Foxp3+RORγt+ Tregs in the PE. In vitro, the level of Helios mRNA and protein expression was reduced in induced Tregs following IRF4 over-expression. Additionally, the level of RORγt protein expression was substantially increased. However, ectopic Helios expression in induced Tregs reversed the effects induced by enhanced IRF4 expression. CONCLUSION: IRF4 may serve as a potential molecule that promotes the conversion of regulatory T cells from MPE to a Th17-like phenotype by modulating Helios.

15.
Dis Markers ; 2021: 5574472, 2021.
Article En | MEDLINE | ID: mdl-34257746

Regulatory T cells (Tregs) expressing the Foxp3 transcription factor are indispensable for the maintenance of immune system homeostasis. Tregs may lose Foxp3 expression or be reprogrammed into cells that produce proinflammatory cytokines, for example, Th1-like Tregs, Th2-like Tregs, Th17-like Tregs, and Tfh-like Tregs. Accordingly, selective therapeutic molecules that manipulate Treg lineage stability and/or functional activity might have the potential to improve aberrant immune responses in human disorders. In particular, the transcription factor Helios has emerged as an important marker and modulator of Tregs. Therefore, the current review focuses on recent findings on the expression, function, and mechanisms of Helios, as well as the patterns of Foxp3+ Tregs coexpressing Helios in various human disorders, in order to explore the potential of Helios for the improvement of many immune-related diseases. The studies were selected from PubMed using the library of the Nanjing Medical University in this review. The findings of the included studies indicate that Helios expression stabilizes the phenotype and function of Foxp3+ Tregs in certain inflammatory environments. Further, Tregs coexpressing Helios and Foxp3 were identified as a specific phenotype of stronger suppressor immune cells in both humans and animal models. Importantly, there is ample evidence that Helios-expressing Foxp3+ Tregs are relevant to various human disorders, including connective tissue diseases, infectious diseases, solid organ transplantation-related immunity, and cancer. Thus, Helios+Foxp3+CD4+ Tregs could be a valuable target in human diseases, and their potential should be explored further in the clinical setting.


Autoimmune Diseases/immunology , Connective Tissue Diseases/immunology , Forkhead Transcription Factors/immunology , Ikaros Transcription Factor/immunology , Infections/immunology , Neoplasms/immunology , T-Lymphocytes, Regulatory/immunology , Animals , Autoimmune Diseases/metabolism , Biomarkers/metabolism , Connective Tissue Diseases/metabolism , Forkhead Transcription Factors/metabolism , Humans , Ikaros Transcription Factor/metabolism , Infections/metabolism , Inflammation/immunology , Inflammation/metabolism , Neoplasms/metabolism , Organ Transplantation , T-Lymphocytes, Regulatory/metabolism
16.
Front Oncol ; 11: 687884, 2021.
Article En | MEDLINE | ID: mdl-34109133

PURPOSE: MYCN amplification plays a critical role in defining high-risk subgroup of patients with neuroblastoma. We aimed to develop and validate the CT-based machine learning models for predicting MYCN amplification in pediatric abdominal neuroblastoma. METHODS: A total of 172 patients with MYCN amplified (n = 47) and non-amplified (n = 125) were enrolled. The cohort was randomly stratified sampling into training and testing groups. Clinicopathological parameters and radiographic features were selected to construct the clinical predictive model. The regions of interest (ROIs) were segmented on three-phrase CT images to extract first-, second- and higher-order radiomics features. The ICCs, mRMR and LASSO methods were used for dimensionality reduction. The selected features from the training group were used to establish radiomics models using Logistic regression, Support Vector Machine (SVM), Bayes and Random Forest methods. The performance of four different radiomics models was evaluated according to the area under the receiver operator characteristic (ROC) curve (AUC), and then compared by Delong test. The nomogram incorporated of clinicopathological parameters, radiographic features and radiomics signature was developed through multivariate logistic regression. Finally, the predictive performance of the clinical model, radiomics models, and nomogram was evaluated in both training and testing groups. RESULTS: In total, 1,218 radiomics features were extracted from the ROIs on three-phrase CT images, and then 14 optimal features, including one original first-order feature and eight wavelet-transformed features and five LoG-transformed features, were identified and selected to construct the radiomics models. In the training group, the AUC of the Logistic, SVM, Bayes and Random Forest model was 0.940, 0.940, 0.780 and 0.927, respectively, and the corresponding AUC in the testing group was 0.909, 0.909, 0.729, 0.851, respectively. There was no significant difference among the Logistic, SVM and Random Forest model, but all better than the Bayes model (p <0.005). The predictive performance of the Logistic radiomics model based on three-phrase is similar to nomogram, but both better than the clinical model and radiomics model based on single venous phase. CONCLUSION: The CT-based radiomics signature is able to predict MYCN amplification of pediatric abdominal NB with high accuracy based on SVM, Logistic and Random Forest classifiers, while Bayes classifier yields lower predictive performance. When combined with clinical and radiographic qualitative features, the clinics-radiomics nomogram can improve the performance of predicting MYCN amplification.

17.
AMB Express ; 11(1): 72, 2021 May 25.
Article En | MEDLINE | ID: mdl-34032943

An EsxA-encoding gene (esxA) was previously identified in the genome of the plant growth-promoting rhizobacterium Paenibacillus terrae strain NK3-4. The esxA was cloned and expressed in Pichia pastoris, after which the effects of the EsxA protein on rice seedling growth were analyzed to determine whether EsxA contributes to the plant growth-promoting activity of strain NK3-4. The esxA was successfully cloned from the NK3-4 genome and ligated to the eukaryotic expression vector pPICZαA. The resulting pPICZαA-esxA recombinant plasmid was transinfected into yeast cells, and esxA expression in the yeast cells was confirmed. The treatment of seed- buds with the EsxA protein increased the root length by 1.35-times, but decreased the bud length. Additionally, in rice seedlings treated with EsxA, the root and shoot lengths increased by 2.6- and 1.7-times, respectively. These findings imply that EsxA is important for the promotion of rice plant growth by P. terrae strain NK3-4. Furthermore, the construction of the esxA expression vector and the engineered strain may be useful for future investigations of the mechanism underlying the plant growth-promoting effects of EsxA, with implications for the application of EsxA for regulating plant growth.

18.
Carbohydr Polym ; 260: 117796, 2021 May 15.
Article En | MEDLINE | ID: mdl-33712144

The polysaccharide (DRP) was gained from dandelion roots by ultrasonic-assisted enzymatic extraction (UAEE) followed by two-step column purification. Then selenylation of DRP has been accomplished by HNO3-Na2SeO3 method. sDRP-1 and sDRP-2 with the selenium content of 170 ± 1.13 and 710 ± 4.00 µg/g were prepared for further structural characterization and bioactivity determination. DRP, sDRP-1, and sDRP-2 were composed of the same monosaccharides in different molar ratios, and the molecular weights of DRP, sDRP-1 and sDRP-2 were 8700, 7900, and 5600 Da, respectively. Fourier transform infrared (FT-IR) spectra confirmed that DRP, sDRP-1, and sDRP-2 possessed similar functional groups. The results of Congo red test, X-ray diffraction (XRD) and scanning electron microscopy (SEM) showed that DRP, sDRP-1, and sDRP-2 had no three helix structure, did not form single crystal, and all belonged to amorphous morphology. sDRP-1 and sDRP-2 possessed greater antioxidant activities in vitro than the native polysaccharide DRP. At the same time, the selenized polysaccharides showed better immunomodulatory ability and could be used as new-type immunoenhancer. The present conclusions provided theoretical basis for the new application of dandelion polysaccharides and the development of dandelion resources.


Antioxidants/chemistry , Polysaccharides/chemistry , Selenium/chemistry , Taraxacum/metabolism , Animals , Cell Survival/drug effects , Hydrogen Peroxide/pharmacology , Immunologic Factors/chemistry , Immunologic Factors/metabolism , Immunologic Factors/pharmacology , Macrophages/cytology , Macrophages/drug effects , Macrophages/metabolism , Mice , Molecular Weight , Phagocytosis/drug effects , Plant Roots/metabolism , Polysaccharides/metabolism , Polysaccharides/pharmacology , RAW 264.7 Cells
19.
Neuro Oncol ; 23(9): 1470-1480, 2021 09 01.
Article En | MEDLINE | ID: mdl-33433612

BACKGROUND: Sixty percent of surgically resected brain metastases (BrM) recur within 1 year. These recurrences have long been thought to result from the dispersion of cancer cells during surgery. We tested the alternative hypothesis that invasion of cancer cells into the adjacent brain plays a significant role in local recurrence and shortened overall survival. METHODS: We determined the invasion pattern of 164 surgically resected BrM and correlated with local recurrence and overall survival. We performed single-cell RNA sequencing (scRNAseq) of >15,000 cells from BrM and adjacent brain tissue. Validation of targets was performed with a novel cohort of BrM patient-derived xenografts (PDX) and patient tissues. RESULTS: We demonstrate that invasion of metastatic cancer cells into the adjacent brain is associated with local recurrence and shortened overall survival. scRNAseq of paired tumor and adjacent brain samples confirmed the existence of invasive cancer cells in the tumor-adjacent brain. Analysis of these cells identified cold-inducible RNA-binding protein (CIRBP) overexpression in invasive cancer cells compared to cancer cells located within the metastases. Applying PDX models that recapitulate the invasion pattern observed in patients, we show that CIRBP is overexpressed in highly invasive BrM and is required for efficient invasive growth in the brain. CONCLUSIONS: These data demonstrate peritumoral invasion as a driver of treatment failure in BrM that is functionally mediated by CIRBP. These findings improve our understanding of the biology underlying postoperative treatment failure and lay the groundwork for rational clinical trial development based upon invasion pattern in surgically resected BrM.


Brain Neoplasms , Radiosurgery , Brain , Brain Neoplasms/genetics , Brain Neoplasms/surgery , Humans , Neoplasm Recurrence, Local/genetics , RNA-Binding Proteins/genetics
20.
Org Lett ; 22(18): 7123-7128, 2020 Sep 18.
Article En | MEDLINE | ID: mdl-32857518

A palladium-catalyzed decarbonylative alkenylation of aromatic carboxylic acids was developed. Under the reaction conditions, various benzoic acids including those bearing functional groups coupled to terminal alkenes, producing the corresponding internal alkenes in good to high yields. Cinnamic acids and bioactive benzoic acids such as 3-methylflavone-8-carboxylic acid, probenecid, adapalin, and febuxostat were also applicable to this reaction, demonstrating the potential synthetic value of this new reaction in organic synthesis.

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