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1.
Nat Commun ; 15(1): 5833, 2024 Jul 11.
Article in English | MEDLINE | ID: mdl-38992033

ABSTRACT

Arthropod-borne viruses represent a crucial public health threat. Current arboviral serology assays are either labor intensive or incapable of distinguishing closely related viruses, and many zoonotic arboviruses that may transition to humans lack any serologic assays. In this study, we present a programmable phage display platform, ArboScan, that evaluates antibody binding to overlapping peptides that represent the proteomes of 691 human and zoonotic arboviruses. We confirm that ArboScan provides detailed antibody binding information from animal sera, human sera, and an arthropod blood meal. ArboScan identifies distinguishing features of antibody responses based on exposure history in a Colombian cohort of Zika patients. Finally, ArboScan details epitope level information that rapidly identifies candidate epitopes with potential protective significance. ArboScan thus represents a resource for characterizing human and animal arbovirus antibody responses at cohort scale.


Subject(s)
Antibodies, Viral , Arboviruses , Humans , Arboviruses/immunology , Arboviruses/isolation & purification , Animals , Antibodies, Viral/immunology , Antibodies, Viral/blood , Peptides/immunology , Peptides/chemistry , Zika Virus Infection/virology , Zika Virus Infection/immunology , Zika Virus Infection/blood , Zika Virus/immunology , Epitopes/immunology , Serologic Tests/methods , Arbovirus Infections/virology , Arbovirus Infections/immunology , Proteome , Colombia , Female , Peptide Library , Cell Surface Display Techniques , Male
2.
Parasit Vectors ; 17(1): 268, 2024 Jun 25.
Article in English | MEDLINE | ID: mdl-38918818

ABSTRACT

BACKGROUND: Ticks are obligate hematophagous ectoparasites involved in transmitting viruses of public health importance. The objective of this work was to identify the Jingmen tick virus in hard ticks from the Colombian Caribbean, an arbovirus of importance for public health. METHODS: Ticks were collected in rural areas of Córdoba and Cesar, Colombia. Taxonomic identification of ticks was carried out, and pools of 13 individuals were formed. RNA extraction was performed. Library preparation was performed with the MGIEasy kit, and next-generation sequencing (NGS) with MGI equipment. Bioinformatic analyses and taxonomic assignments were performed using the Galaxy platform, and phylogenetic analyses were done using IQ-TREE2. RESULTS: A total of 766 ticks were collected, of which 87.33% (669/766) were Rhipicephalus microplus, 5.4% (42/766) Dermacentor nitens, 4.2% (32/766) Rhipicephalus linnaei, and 3.0% (23/766) Amblyomma dissimile. Complete and partial segments 1, 2, 3, and 4 of Jingmen tick virus (JMTV) were detected in the metatranscriptome of the species R. microplus, D. nitens, and A. dissimile. The JMTVs detected are phylogenetically related to JMTVs detected in Aedes albopictus in France, JMTVs detected in R. microplus in Trinidad and Tobago, JMTVs in R. microplus and A. variegatum in the French Antilles, and JMTVs detected in R. microplus in Colombia. Interestingly, our sequences clustered closely with JMTV detected in humans from Kosovo. CONCLUSIONS: JMTV was detected in R. microplus, D. nitens, and A. dissimile. JMTV could pose a risk to humans. Therefore, it is vital to establish epidemiological surveillance measures to better understand the possible role of JMTV in tropical diseases.


Subject(s)
Arboviruses , Ixodidae , Phylogeny , Animals , Colombia/epidemiology , Ixodidae/virology , Ixodidae/classification , Arboviruses/genetics , Arboviruses/isolation & purification , Arboviruses/classification , Caribbean Region , Female , Male , Public Health , High-Throughput Nucleotide Sequencing , Rhipicephalus/virology , Rhipicephalus/classification , Humans , Amblyomma/virology , Dermacentor/virology
3.
Am J Trop Med Hyg ; 111(1): 107-112, 2024 Jul 03.
Article in English | MEDLINE | ID: mdl-38834052

ABSTRACT

Diagnostics for febrile illnesses other than malaria are not readily available in rural sub-Saharan Africa. This study assessed exposure to three mosquito-borne arboviruses-dengue virus (DENV), Zika virus (ZIKV), and chikungunya virus (CHIKV)-in southern Mali. Seroprevalence for DENV, CHIKV, and ZIKV was analyzed by detection of IgG antibodies and determined to be 77.2%, 31.2%, and 25.8%, respectively. Among study participants, 11.3% were IgG-positive for all three arboviruses. DENV had the highest seroprevalence rate at all sites; the highest seroprevalence of CHIKV and ZIKV was observed in Bamba. The seroprevalence for all three arboviruses increased with age, and the highest seroprevalence was observed among adults older than 50 years. The prevalence of Plasmodium spp. in the cohort was analyzed by microscopy and determined to be 44.5% (N = 600) with Plasmodium falciparum representing 95.1% of all infections. This study demonstrates the co-circulation of arboviruses in a region hyperendemic for malaria and highlights the needs for arbovirus diagnostics in rural sub-Saharan Africa.


Subject(s)
Chikungunya Fever , Dengue Virus , Humans , Mali/epidemiology , Seroepidemiologic Studies , Adult , Middle Aged , Male , Female , Adolescent , Young Adult , Chikungunya Fever/epidemiology , Chikungunya Fever/blood , Dengue Virus/immunology , Child , Child, Preschool , Chikungunya virus/immunology , Dengue/epidemiology , Arboviruses/immunology , Arboviruses/isolation & purification , Antibodies, Viral/blood , Malaria/epidemiology , Arbovirus Infections/epidemiology , Arbovirus Infections/virology , Zika Virus Infection/epidemiology , Zika Virus Infection/blood , Zika Virus Infection/diagnosis , Zika Virus/immunology , Endemic Diseases , Immunoglobulin G/blood , Aged , Infant , Prevalence
4.
Viruses ; 16(6)2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38932256

ABSTRACT

Dugbe virus (DUGV) is a tick-borne arbovirus first isolated in Nigeria in 1964. It has been detected in many African countries using such diverse methods as serological tests, virus isolation, and molecular detection. In Senegal, reports of DUGV isolates mainly occurred in the 1970s and 1980s. Here, we report a contemporary detection of three novel DUGV isolates upon screening of a total of 2877 individual ticks regrouped into 844 pools. The three positive pools were identified as Amblyomma variegatum, the main known vector of DUGV, collected in the southern part of the country (Kolda region). Interestingly, phylogenetic analysis indicates that the newly sequenced isolates are globally related to the previously characterized isolates in West Africa, thus highlighting potentially endemic, unnoticed viral transmission. This study was also an opportunity to develop a rapid and affordable protocol for full-genome sequencing of DUGV using nanopore technology. The results suggest a relatively low mutation rate and relatively conservative evolution of DUGV isolates.


Subject(s)
Genome, Viral , Phylogeny , Ticks , Animals , Senegal , Ticks/virology , Amblyomma/virology , Arboviruses/genetics , Arboviruses/isolation & purification , Arboviruses/classification
5.
Euro Surveill ; 29(20)2024 05.
Article in English | MEDLINE | ID: mdl-38757289

ABSTRACT

Aedes albopictus collected in 2023 in the greater Paris area (Île-de-France) were experimentally able to transmit five arboviruses: West Nile virus from 3 days post-infection (dpi), chikungunya virus and Usutu virus from 7 dpi, dengue virus and Zika virus from 21 dpi. Given the growing number of imported dengue cases reported in early 2024 in France, surveillance of Ae. albopictus should be reinforced during the Paris Olympic Games in July, when many international visitors including from endemic countries are expected.


Subject(s)
Aedes , Chikungunya virus , Dengue Virus , Zika Virus , Animals , Aedes/virology , Humans , Zika Virus/isolation & purification , Dengue Virus/isolation & purification , Chikungunya virus/isolation & purification , Paris , Mosquito Vectors/virology , West Nile virus/isolation & purification , Arboviruses/isolation & purification , Arbovirus Infections/transmission , Flavivirus/isolation & purification , France , Dengue/transmission , Dengue/epidemiology , Zika Virus Infection/transmission
6.
Epidemiol Serv Saude ; 33: e2024008, 2024.
Article in English, Portuguese | MEDLINE | ID: mdl-38808901

ABSTRACT

OBJECTIVE: To create a protocol for performing minimally invasive autopsies (MIA) in detecting deaths from arboviruses and report preliminary data from its application in Ceará state, Brazil. METHODS: Training was provided to medical pathologists on MIA. RESULTS: A protocol was established for performing MIA, defining criteria for sample collection, storage methods, and diagnoses to be carried out according to the type of biological sample; 43 MIAs were performed in three months. Of these, 21 (48.8%) arrived at the Death Verification Service (SVO) with arboviruses as a diagnostic hypothesis, and seven (16.3%) were confirmed (six chikungunya cases and one dengue case); cases of COVID-19 (n = 9), tuberculosis (n = 5), meningitis (n = 4), cryptococcosis (n = 1), Creutzfeldt-Jakob disease (n = 1), breast cancer (n = 1), and human rabies (n = 1) were also confirmed. CONCLUSION: The protocol implemented enabled identification of a larger number of suspected arbovirus-related deaths, as well as confirmation of other diseases of interest for surveillance. MAIN RESULTS: A protocol was developed to perform minimally invasive autopsies (MIAs) in Death Verification Services (SVO), capable of expanding the system's capacity to identify a greater number of deaths suspected to be due to arboviruses. IMPLICATIONS FOR SERVICES: The experience suggests that in-service trained health professionals are able to perform MIA, and that use of this technique in SVOs has been shown to be capable of increasing the system's sensitivity in detecting deaths of interest to public health. PERSPECTIVES: Trained professionals will be able to collect biological material in hospitals, through MIA, in cases of interest for health surveillance and when family members do not allow a complete conventional autopsy to be performed.


Subject(s)
Arbovirus Infections , Autopsy , Humans , Brazil/epidemiology , Autopsy/methods , Arbovirus Infections/epidemiology , Arbovirus Infections/diagnosis , Arbovirus Infections/pathology , Female , Sensitivity and Specificity , Male , Middle Aged , Adult , Adolescent , Young Adult , Arboviruses/isolation & purification , Aged , Population Surveillance/methods , Epidemiological Monitoring , Cause of Death , Child , Child, Preschool
7.
Braz J Infect Dis ; 28(2): 103741, 2024.
Article in English | MEDLINE | ID: mdl-38670165

ABSTRACT

Sickle Cell Disease (SCD) is a hereditary disease characterized by extravascular and intravascular hemolysis and clinical variability, from mild pain to potentially life-threatening. Arboviruses include mainly Zika (ZIKV), Chikungunya (CHKV), and Dengue (DENV) virus, and are considered a public and social health problem. The present cross-sectional observational study aimed to investigate the prevalence of arbovirus infection in SCD patients from two Brazilian cities, Salvador and Manaus located in Bahia and Amazonas states respectively. A total of 409 individuals with SCD were included in the study, and 307 (75.06 %) patients tested positive for DENV-IgG, 161 (39.36 %) for ZIKV-IgG, and 60 (14.67 %) for CHIKV-IgG. Only one individual was positive for DENV-NS1 and another for DENV-IgM, both from Salvador. No individuals had positive serology for ZIKV-IgM or CHIKV-IgM. Arbovirus positivity by IgG testing revealed that the SCD group presented high frequencies in both cities. Interestingly, these differences were only statistically significant for ZIKV-IgG (p = 0.023) and CHIKV-IgG (p = 0.005) among SCD patients from Manaus. The reshaping of arbovirus from its natural habitat by humans due to disorderly urban expansion and the ease of international Mobility has been responsible for facilitating the spread of vector-borne infectious diseases in humans. We found the need for further studies on arboviruses in this population to elucidate the real association and impact, especially in acute infection. We hope that this study will contribute to improvements in the personalized clinical follow-up of SCD patients, identifying the influence of arbovirus infection in severe disease manifestations.


Subject(s)
Anemia, Sickle Cell , Arbovirus Infections , Arboviruses , Humans , Brazil/epidemiology , Anemia, Sickle Cell/epidemiology , Anemia, Sickle Cell/complications , Cross-Sectional Studies , Male , Female , Adult , Prevalence , Arbovirus Infections/epidemiology , Arbovirus Infections/virology , Young Adult , Adolescent , Arboviruses/isolation & purification , Immunoglobulin G/blood , Child , Zika Virus Infection/epidemiology , Zika Virus Infection/complications , Antibodies, Viral/blood , Middle Aged , Dengue/epidemiology , Immunoglobulin M/blood , Dengue Virus/immunology , Zika Virus/immunology , Zika Virus/isolation & purification , Child, Preschool , Chikungunya Fever/epidemiology , Chikungunya Fever/complications
8.
Virol Sin ; 39(3): 369-377, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38599520

ABSTRACT

Infectious diseases caused by arboviruses are a public health concern in Pakistan. However, studies on data prevalence and threats posed by arboviruses are limited. This study investigated the seroprevalence of arboviruses in a healthy population in Pakistan, including severe fever with thrombocytopenia syndrome virus (SFTSV), Crimean-Congo hemorrhagic fever virus (CCHFV), Tamdy virus (TAMV), and Karshi virus (KSIV) based on a newly established luciferase immunoprecipitation system (LIPS) assays, and Zika virus (ZIKV) by enzyme-linked immunosorbent assays (ELISA). Neutralizing activities against these arboviruses were further examined from the antibody positive samples. The results showed that the seroprevalence of SFTSV, CCHFV, TAMV, KSIV, and ZIKV was 17.37%, 7.58%, 4.41%, 1.10%, and 6.48%, respectively, and neutralizing to SFTSV (1.79%), CCHFV (2.62%), and ZIKV (0.69%) were identified, as well as to the SFTSV-related Guertu virus (GTV, 0.83%). Risk factors associated with the incidence of exposure and levels of antibody response were analyzed. Moreover, co-exposure to different arboviruses was demonstrated, as thirty-seven individuals were having antibodies against multiple viruses and thirteen showed neutralizing activity. Males, individuals aged ≤40 years, and outdoor workers had a high risk of exposure to arboviruses. All these results reveal the substantial risks of infection with arboviruses in Pakistan, and indicate the threat from co-exposure to multiple arboviruses. The findings raise the need for further epidemiologic investigation in expanded regions and populations and the necessity to improve health surveillance in Pakistan.


Subject(s)
Antibodies, Neutralizing , Antibodies, Viral , Arbovirus Infections , Arboviruses , Humans , Pakistan/epidemiology , Seroepidemiologic Studies , Male , Female , Adult , Arbovirus Infections/epidemiology , Arbovirus Infections/virology , Antibodies, Viral/blood , Young Adult , Middle Aged , Arboviruses/immunology , Arboviruses/isolation & purification , Adolescent , Child , Antibodies, Neutralizing/blood , Risk Factors , Aged , Child, Preschool , Enzyme-Linked Immunosorbent Assay
9.
Viruses ; 14(2)2022 01 28.
Article in English | MEDLINE | ID: mdl-35215862

ABSTRACT

Alphaviruses (Togaviridae) are arthropod-borne viruses responsible for several emerging diseases, maintained in nature through transmission between hematophagous arthropod vectors and susceptible vertebrate hosts. Although bats harbor many species of viruses, their role as reservoir hosts in emergent zoonoses has been verified only in a few cases. With bats being the second most diverse order of mammals, their implication in arbovirus infections needs to be elucidated. Reports on arbovirus infections in bats are scarce, especially in South American indigenous species. In this work, we report the genomic detection and identification of two different alphaviruses in oral swabs from bats captured in Northern Uruguay. Phylogenetic analysis identified Río Negro virus (RNV) in two different species: Tadarida brasiliensis (n = 6) and Myotis spp. (n = 1) and eastern equine encephalitis virus (EEEV) in Myotis spp. (n = 2). Previous studies of our group identified RNV and EEEV in mosquitoes and horse serology, suggesting that they may be circulating in enzootic cycles in our country. Our findings reveal that bats can be infected by these arboviruses and that chiropterans could participate in the viral natural cycle as virus amplifiers or dead-end hosts. Further studies are warranted to elucidate the role of these mammals in the biological cycle of these alphaviruses in Uruguay.


Subject(s)
Alphavirus Infections/veterinary , Alphavirus/isolation & purification , Arboviruses/isolation & purification , Chiroptera/virology , Encephalitis Virus, Eastern Equine/isolation & purification , Alphavirus/classification , Alphavirus/genetics , Alphavirus Infections/virology , Animals , Arbovirus Infections/veterinary , Arbovirus Infections/virology , Arboviruses/classification , Arboviruses/genetics , Encephalitis Virus, Eastern Equine/classification , Encephalitis Virus, Eastern Equine/genetics , Phylogeny , Uruguay
10.
PLoS Negl Trop Dis ; 16(1): e0010171, 2022 Jan.
Article in English | MEDLINE | ID: mdl-35073317

ABSTRACT

Aedes simpsoni complex has a wide distribution in Africa and comprises at least three described sub-species including the yellow fever virus (YFV) vector Ae. bromeliae. To date, the distribution and relative contributions of the sub-species and/or subpopulations including bionomic characteristics in relation to YF transmission dynamics remain poorly studied. In this study conducted in two areas with divergent ecosystems: peri-urban (coastal Rabai) and rural (Rift Valley Kerio Valley) in Kenya, survival rate was estimated by parity in Ae. simpsoni s.l. mosquitoes sampled using CO2-baited BG Sentinel traps. We then applied PCR targeting the nuclear internal transcribed spacer 2 (ITS2), region followed by sequencing and phylogenetic analytics to identify the sibling species in the Ae. simpsoni complex among parous and blood fed cohorts. Our results show that Ae. bromeliae was the most dominant sub-species in both areas, exhibiting high survival rates, human blood-feeding, and potentially, high vectorial capacity for pathogen transmission. We document for the first time the presence of Ae. lilii in Kenya and potentially yet-to-be described species in the complex displaying human feeding tendencies. We also infer a wide host feeding range on rodents, reptile, and domestic livestock besides humans especially for Ae. bromeliae. This feeding trend could likely expose humans to various zoonotic pathogens. Taken together, we highlight the utility of genotype-based analyses to generate precision surveillance data of vector populations for enhanced disease risk prediction and to guide cost-effective interventions (e.g. YF vaccinations).


Subject(s)
Aedes/classification , Aedes/virology , Arbovirus Infections/transmission , Arboviruses/isolation & purification , Mosquito Vectors/virology , Yellow Fever/transmission , Aedes/physiology , Africa, Eastern/epidemiology , Animals , Arbovirus Infections/epidemiology , Arboviruses/classification , Ecosystem , Environment , Feeding Behavior , Female , Host Specificity , Yellow Fever/epidemiology , Yellow fever virus/classification , Yellow fever virus/isolation & purification
11.
J Virol ; 96(4): e0146421, 2022 02 23.
Article in English | MEDLINE | ID: mdl-34586860

ABSTRACT

Bats are reservoirs of important zoonotic viruses like Nipah and SARS viruses. However, whether the blood-sucking arthropods on the body surface of bats also carry these viruses and the relationship between viruses carried by the blood-sucking arthropods and viruses carried by bats have not been reported. This study collected 686 blood-sucking arthropods on the body surface of bats from Yunnan Province, China, between 2012 and 2015, and they included wingless bat flies, bat flies, ticks, mites, and fleas. The viruses carried by these arthropods were analyzed using a meta-transcriptomic approach, and 144 highly diverse positive-sense single-stranded RNA, negative-sense single-stranded RNA, and double-stranded RNA viruses were found, of which 138 were potentially new viruses. These viruses were classified into 14 different virus families or orders, including Bunyavirales, Mononegavirales, Reoviridae, and Picornavirales. Further analyses found that Bunyavirales were the most abundant virus group (84% of total virus RNA) in ticks, whereas narnaviruses were the most abundant (52 to 92%) in the bat flies and wingless bat flies libraries, followed by solemoviruses (1 to 29%) and reoviruses (0 to 43%). These viruses were highly structured based on the arthropod types. It is worth noting that no bat-borne zoonotic viruses were found in the virome of bat-infesting arthropod, seemingly not supporting that bat surface arthropods are vectors of zoonotic viruses carried by bats. IMPORTANCE Bats are reservoirs of many important viral pathogens. To evaluate whether bat-parasitic blood-sucking arthropods participate in the circulation of these important viruses, it is necessary to conduct unbiased virome studies on these arthropods. We evaluated five types of blood-sucking parasitic arthropods on the surface of bats in Yunnan, China, and identified a variety of viruses, some of which had high prevalence and abundance levels, although there is limited overlap in virome between distant arthropods. While most of the virome discovered here is potentially arthropod-specific viruses, we identified three possible arboviruses, including one orthobunyavirus and two vesiculoviruses (family Rhabdoviridae), suggesting bat-parasitic arthropods carry viruses with risk of spillage, which warrants further study.


Subject(s)
Arthropods/virology , Chiroptera/parasitology , Disease Reservoirs/virology , Virome , Animals , Arboviruses/classification , Arboviruses/genetics , Arboviruses/isolation & purification , Arthropods/classification , Arthropods/genetics , China , Disease Reservoirs/parasitology , Ectoparasitic Infestations/parasitology , Ectoparasitic Infestations/veterinary , Ectoparasitic Infestations/virology , Phylogeny , RNA Viruses/classification , RNA Viruses/genetics , RNA Viruses/isolation & purification , Virome/genetics
12.
Parasit Vectors ; 14(1): 610, 2021 Dec 19.
Article in English | MEDLINE | ID: mdl-34924014

ABSTRACT

BACKGROUND: Vector-borne diseases, especially arboviruses transmitted by Aedes sp. mosquitos, should be a health policy priority in Brazil. Despite this urgency, there are significant limitations in the traditional surveillance system, mainly in vulnerable areas. This study aimed to investigate the circulation of dengue (DENV), Zika (ZIKV), and chikungunya viruses (CHIKV) by laboratory syndromic surveillance (LSS) in a slum area of the Federal District of Brazil, comparing the results with traditional surveillance data. METHODS: LSS for acute febrile and/or exanthematous symptoms was developed at a health unit of Cidade Estrutural, in order to identify the circulation of arboviruses transmitted by Aedes sp. mosquitos. Between June 2019 and March 2020, 131 valid participants were identified and sera tested by reverse transcription polymerase chain reaction (RT-PCR) for DENV (by serotype), ZIKV, and CHIKV acute infection and by immunoglobulin M enzyme-inked immunosorbent assay (ELISA-IgM) for DENV and CHIKV 15-21 days after symptom onset, when the participant reported no respiratory signs (cough and/or coryza). The results obtained were compared with traditional surveillance data for the study area and period. RESULTS: At least three DENV-1 (2.3%), four DENV-2 (3%), and one CHIKV (0.7%) cases were confirmed in the laboratory, showing evidence of hyperendemicity even though LSS had not reached the historic peak dengue fever months in the Federal District (April-May). When the results obtained here were compared with traditional surveillance, a significant discrepancy was observed, including underreporting of CHIKV infection. CONCLUSIONS: In addition to the risks posed to the study population, the area investigated with its respective socio-environmental profile may be a potential site for spread of the virus, given the cosmopolitan presence of Aedes sp. and human mobility in the Federal District. It is also suggested that traditional epidemiological surveillance may be reporting acute viral infections other than DENV as dengue fever, while underreporting other arboviruses transmitted by Aedes sp. mosquitos in the Federal District.


Subject(s)
Aedes/virology , Arbovirus Infections/epidemiology , Arbovirus Infections/virology , Arboviruses/isolation & purification , Poverty Areas , RNA, Viral/isolation & purification , Animals , Brazil/epidemiology , Humans , Population Surveillance , Reverse Transcriptase Polymerase Chain Reaction , Risk Factors
13.
Viruses ; 13(12)2021 11 26.
Article in English | MEDLINE | ID: mdl-34960644

ABSTRACT

Members of the Lipopteninae subfamily are blood-sucking ectoparasites of mammals. The sheep ked (Melophagus ovinus) is a widely distributed ectoparasite of sheep. It can be found in most sheep-rearing areas and can cause skin irritation, restlessness, anemia, weight loss and skin injuries. Various bacteria and some viruses have been detected in M. ovinus; however, the virome of this ked has never been studied using modern approaches. Here, we study the virome of M. ovinus collected in the Republic of Tuva, Russia. In our research, we were able to assemble full genomes for five novel viruses, related to the Rhabdoviridae (Sigmavirus), Iflaviridae, Reoviridae and Solemoviridae families. Four viruses were found in all five of the studied pools, while one virus was found in two pools. Phylogenetically, all of the novel viruses clustered together with various recently described arthropod viruses. All the discovered viruses were tested on their ability to replicate in the mammalian porcine embryo kidney (PEK) cell line. Aksy-Durug Melophagus sigmavirus RNA was detected in the PEK cell line cultural supernate after the first, second and third passages. Such data imply that this virus might be able to replicate in mammalian cells, and thus, can be considered as a possible arbovirus.


Subject(s)
Arboviruses/genetics , Diptera/virology , Ectoparasitic Infestations/virology , Sheep Diseases/parasitology , Virome , Animals , Arboviruses/isolation & purification , Cell Line , Phylogeny , Reoviridae , Rhabdoviridae , Russia , Sheep
14.
Viruses ; 13(12)2021 12 19.
Article in English | MEDLINE | ID: mdl-34960816

ABSTRACT

Jingmen tick virus (JMTV) and the related jingmenvirus-termed Alongshan virus are recognized as globally emerging human pathogenic tick-borne viruses. These viruses have been detected in various mammals and invertebrates, although their natural transmission cycles remain unknown. JMTV and a novel jingmenvirus, tentatively named Takachi virus (TAKV), have now been identified during a surveillance of tick-borne viruses in Japan. JMTV was shown to be distributed across extensive areas of Japan and has been detected repeatedly at the same collection sites over several years, suggesting viral circulation in natural transmission cycles in these areas. Interestingly, these jingmenviruses may exist in a host tick species-specific manner. Vertical transmission of the virus in host ticks in nature was also indicated by the presence of JMTV in unfed host-questing Amblyomma testudinarium larvae. Further epidemiological surveillance and etiological studies are necessary to assess the status and risk of jingmenvirus infection in Japan.


Subject(s)
Arboviruses/isolation & purification , Ticks/virology , Animals , Arboviruses/classification , Arboviruses/genetics , Host Specificity , Infectious Disease Transmission, Vertical , Larva/virology , Phylogeny
15.
Viruses ; 13(11)2021 10 25.
Article in English | MEDLINE | ID: mdl-34834955

ABSTRACT

Mosquitoes in the Aedes and Culex genera are considered the main vectors of pathogenic flaviviruses worldwide. Entomological surveillance using universal flavivirus sets of primers in mosquitoes can detect not only pathogenic viruses but also insect-specific ones. It is hypothesized that insect-specific flaviviruses, which naturally infect these mosquitoes, may influence their vector competence for zoonotic arboviruses. Here, entomological surveillance was performed between January 2014 and May 2018 in five different provinces in the northeastern parts of South Africa, with the aim of identifying circulating flaviviruses. Mosquitoes were sampled using different carbon dioxide trap types. Overall, 64,603 adult mosquitoes were collected, which were screened by RT-PCR and sequencing. In total, 17 pools were found positive for insect-specific Flaviviruses in the mosquito genera Aedes (12/17, 70.59%) and Anopheles (5/17, 29.41%). No insect-specific viruses were detected in Culex species. Cell-fusing agent viruses were detected in Aedes aegypti and Aedes caballus. A range of anopheline mosquitoes, including Anopheles coustani, An. squamosus and An. maculipalpis, were positive for Culex flavivirus-like and Anopheles flaviviruses. These results confirm the presence of insect-specific flaviviruses in mosquito populations in South Africa, expands their geographical range and indicates potential mosquito species as vector species.


Subject(s)
Culicidae/virology , Flavivirus/classification , Flavivirus/isolation & purification , Mosquito Vectors/virology , Aedes/virology , Animals , Anopheles/virology , Arboviruses/classification , Arboviruses/genetics , Arboviruses/isolation & purification , Culex/virology , Flavivirus/genetics , Insect Viruses/isolation & purification , Phylogeny , South Africa
16.
PLoS One ; 16(11): e0259419, 2021.
Article in English | MEDLINE | ID: mdl-34807932

ABSTRACT

The Greater Everglades Region of South Florida is one of the largest natural wetlands and the only subtropical ecosystem found in the continental United States. Mosquitoes are seasonally abundant in the Everglades where several potentially pathogenic mosquito-borne arboviruses are maintained in natural transmission cycles involving vector-competent mosquitoes and reservoir-competent vertebrate hosts. The fragile nature of this ecosystem is vulnerable to many sources of environmental change, including a wetlands restoration project, climate change, invasive species and residential development. In this study, we obtained baseline data on the distribution and abundance of both mosquitos and arboviruses occurring in the southern Everglades region during the summer months of 2013, when water levels were high, and in 2014, when water levels were low. A total of 367,060 mosquitoes were collected with CO2-baited CDC light traps at 105 collection sites stratified among the major landscape features found in Everglades National Park, Big Cypress National Preserve, Fakahatchee State Park Preserve and Picayune State Forest, an area already undergoing restoration. A total of 2,010 pools of taxonomically identified mosquitoes were cultured for arbovirus isolation and identification. Seven vertebrate arboviruses were isolated: Everglades virus, Tensaw virus, Shark River virus, Gumbo Limbo virus, Mahogany Hammock virus, Keystone virus, and St. Louis encephalitis virus. Except for Tensaw virus, which was absent in 2013, the remaining viruses were found to be most prevalent in hardwood hammocks and in Fakahatchee, less prevalent in mangroves and pinelands, and absent in cypress and sawgrass. In contrast, in the summer of 2014 when water levels were lower, these arboviruses were far less prevalent and only found in hardwood hammocks, but Tensaw virus was present in cypress, sawgrass, pinelands, and a recently burned site. Major environmental changes are anticipated in the Everglades, many of which will result in increased water levels. How these might lead to the emergence of arboviruses potentially pathogenic to both humans and wildlife is discussed.


Subject(s)
Arboviruses/isolation & purification , Culicidae/virology , Alphavirus/isolation & purification , Animals , Climate Change , Ecosystem , Florida , Introduced Species , Mosquito Vectors/virology , Orthobunyavirus/isolation & purification
17.
PLoS Negl Trop Dis ; 15(11): e0009905, 2021 11.
Article in English | MEDLINE | ID: mdl-34788303

ABSTRACT

Dugbe orthonairovirus (DUGV), a tick-borne zoonotic arbovirus, was first isolated in 1964 in Nigeria. For over four decades, no active surveillance was conducted to monitor the spread and genetic variation of DUGV. This study detected and genetically characterized DUGV circulating in cattle and their infesting ticks (Amblyomma and Rhipicephalus (Boophilus)) in Kwara State, North-Central Nigeria. Blood and or ticks were collected from 1051 cattle at 31 sampling sites (abattoirs and farms) across 10 local government areas of the State. DUGV detection was carried out by RT-qPCR, and positive samples sequenced and phylogenetically analysed. A total of 11824 ticks, mostly A. variegatum (36.0%) and R. (B.) microplus (63.9%), were obtained with mean tick burden of 12 ticks/cattle. Thirty-four (32 A. variegatum and two R. (B.) microplus) of 4644 examined ticks were DUGV-positive, whereas all of the cattle sera tested negative for DUGV genome. Whole genome sequence (S, M and L segments) and phylogenetic analyses indicate that the positive samples shared up to 99.88% nucleotide identity with and clustered around the Nigerian DUGV prototype strain IbAr 1792. Hence, DUGV with high similarity to the previously characterised strain has been detected in Nigeria. To our knowledge, this is the first report of DUGV in North-Central Nigeria and the most recent information after its last surveillance in 1974.


Subject(s)
Amblyomma/virology , Arachnid Vectors/virology , Arboviruses/genetics , Cattle Diseases/virology , Rhipicephalus/virology , Amblyomma/physiology , Animals , Arachnid Vectors/physiology , Arboviruses/classification , Arboviruses/isolation & purification , Cattle , Cattle Diseases/transmission , Female , Male , Nigeria , Phylogeny , Rhipicephalus/physiology
18.
PLoS Negl Trop Dis ; 15(10): e0009790, 2021 10.
Article in English | MEDLINE | ID: mdl-34648498

ABSTRACT

Dengue fever and chikungunya are viral diseases that have spread rapidly throughout the world in recent decades. The occurrence of complications is well known, including prerenal acute kidney injury (AKI), which is usually thought to be caused by dehydration and fluid loss. Thrombotic microangiopathy (TMA) is an uncommon aggravation of dengue fever and chikungunya, with only a few cases described in the medical literature. The aim of this study is to present 3 cases of TMA associated with arboviral infection. Three patients with clinical history, laboratory test, and kidney biopsy results compatible with TMA were selected for the study, 2 of whom had a serological diagnosis of dengue fever and 1 of chikungunya. The 3 patients were followed up at the Federal University of Maranhão Hospital's Nephrology Service in 2018. A targeted gene panel sequencing (TGPS) plus multiple to atypical hemolytic uremic syndrome (aHUS) multiplex ligation-dependent probe amplification (MLPA) was performed in 2 of the patients and revealed in the patient 1 a heterozygous pathogenic variant in the gene THBD, as well as heterozygous deletions in CFH, CFHR1, and CFHR3. In the patient 2, there were heterozygous pathogenic variant in the genes CFI and CFB, in addition to heterozygous deletions in the genes CFHR1 and CFHR3. Both received treatment with eculizumab and undergone recovery of renal function. The third patient had TMA not classified as either aHUS or thrombotic thrombocytopenic purpura (TTP); he abandoned the treatment and returned to the service after 2 years for a dialysis emergency. Patients with arboviral infectious disease and changes that suggest TMA should have appropriate support to establish early diagnosis and useful treatment.


Subject(s)
Arbovirus Infections/virology , Arboviruses/isolation & purification , Thrombotic Microangiopathies/virology , Adolescent , Adult , Arbovirus Infections/genetics , Arboviruses/classification , Arboviruses/genetics , Arboviruses/physiology , Blood Proteins/genetics , Complement C3b Inactivator Proteins/genetics , Heterozygote , Humans , Male , Mutation , Thrombotic Microangiopathies/genetics , Young Adult
19.
Sci Rep ; 11(1): 21129, 2021 10 26.
Article in English | MEDLINE | ID: mdl-34702887

ABSTRACT

In the Americas, some mosquito-borne viruses such as Zika, chikungunya, and dengue circulate among humans in urban transmission cycles, while others, including yellow fever and Mayaro, circulate among monkeys in sylvatic cycles. The intersection of humans and wildlife at forest edges creates risk for zoonotic virus exchange. We built a scaffold tower at the edge of a treefall gap in rainforest bordering Manaus, Brazil, to identify vectors that may bridge transmission between humans and monkeys. We vertically sampled diurnally active, anthropophilic mosquitoes using handheld nets at 0, 5, and 9 m and container-breeding mosquitoes in ovitraps at 0, 5, 10, and 15 m. Haemagogus janthinomys and Psorophora amazonica were present in high relative abundance in nets at each height sampled, while anthropophilic species were uncommon in ovitraps. Hg. janthinomys was more abundant at elevated heights than at ground level, while Ps. amazonica abundance was not significantly stratified across heights. The presence of each species increased with increasing 7-day rainfall lagged at 1 week, and at 1 and 4 weeks prior to collection, respectively. In addition, Hg. janthinomys was most frequently collected at 29.9 °C, irrespective of height. These data provide insight into the potential role of each species as bridge vectors.


Subject(s)
Arboviruses , Culicidae/virology , Forests , Microclimate , Models, Biological , Mosquito Vectors/virology , Animals , Arboviruses/classification , Arboviruses/isolation & purification , Arboviruses/metabolism , Brazil , Culicidae/physiology , Haplorhini , Mosquito Vectors/physiology
20.
J Gen Virol ; 102(10)2021 10.
Article in English | MEDLINE | ID: mdl-34609940

ABSTRACT

Mosquito-transmitted arboviruses constitute a large proportion of emerging infectious diseases that are both a public health problem and a threat to animal populations. Many such viruses were identified in East Africa, a region where they remain important and from where new arboviruses may emerge. We set out to describe and review the relevant mosquito-borne viruses that have been identified specifically in Uganda. We focused on the discovery, burden, mode of transmission, animal hosts and clinical manifestation of those previously involved in disease outbreaks. A search for mosquito-borne arboviruses detected in Uganda was conducted using search terms 'Arboviruses in Uganda' and 'Mosquitoes and Viruses in Uganda' in PubMed and Google Scholar in 2020. Twenty-four mosquito-borne viruses from different animal hosts, humans and mosquitoes were documented. The majority of these were from family Peribunyaviridae, followed by Flaviviridae, Togaviridae, Phenuiviridae and only one each from family Rhabdoviridae and Reoviridae. Sixteen (66.7%) of the viruses were associated with febrile illnesses. Ten (41.7%) of them were first described locally in Uganda. Six of these are a public threat as they have been previously associated with disease outbreaks either within or outside Uganda. Historically, there is a high burden and endemicity of arboviruses in Uganda. Given the many diverse mosquito species known in the country, there is also a likelihood of many undescribed mosquito-borne viruses. Next generation diagnostic platforms have great potential to identify new viruses. Indeed, four novel viruses, two of which were from humans (Ntwetwe and Nyangole viruses) and two from mosquitoes (Kibale and Mburo viruses) were identified in the last decade using next generation sequencing. Given the unbiased approach of detection of viruses by this technology, its use will undoubtedly be critically important in the characterization of mosquito viromes which in turn will inform other diagnostic efforts.


Subject(s)
Arbovirus Infections , Arboviruses , Culicidae/virology , Mosquito Vectors/virology , Animals , Arbovirus Infections/epidemiology , Arbovirus Infections/transmission , Arbovirus Infections/veterinary , Arbovirus Infections/virology , Arboviruses/classification , Arboviruses/genetics , Arboviruses/isolation & purification , Arboviruses/physiology , Communicable Diseases, Emerging/epidemiology , Disease Outbreaks , Endemic Diseases , High-Throughput Nucleotide Sequencing , Humans , Prevalence , Uganda/epidemiology
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