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1.
Cell Mol Life Sci ; 81(1): 348, 2024 Aug 13.
Article in English | MEDLINE | ID: mdl-39136766

ABSTRACT

The biological clock in eukaryotes controls daily rhythms in physiology and behavior. It displays a complex organization that involves the molecular transcriptional clock and the redox oscillator which may coordinately work to control cellular rhythms. The redox oscillator has emerged very early in evolution in adaptation to the environmental changes in O2 levels and has been shown to regulate daily rhythms in glycerolipid (GL) metabolism in different eukaryotic cells. GLs are key components of lipid droplets (LDs), intracellular storage organelles, present in all living organisms, and essential for energy and lipid homeostasis regulation and survival; however, the cell bioenergetics status is not constant across time and depends on energy demands. Thus, the formation and degradation of LDs may reflect a time-dependent process following energy requirements. This work investigated the presence of metabolic rhythms in LD content along evolution by studying prokaryotic and eukaryotic cells and organisms. We found sustained temporal oscillations in LD content in Pseudomonas aeruginosa bacteria and Caenorhabditis elegans synchronized by temperature cycles, in serum-shock synchronized human embryonic kidney cells (HEK 293 cells) and brain tumor cells (T98G and GL26) after a dexamethasone pulse. Moreover, in synchronized T98G cells, LD oscillations were altered by glycogen synthase kinase-3 (GSK-3) inhibition that affects the cytosolic activity of the metabolic oscillator or by knocking down LIPIN-1, a key GL synthesizing enzyme. Overall, our findings reveal the existence of metabolic oscillations in terms of LD content highly conserved across evolutionary scales notwithstanding variations in complexity, regulation, and cell organization.


Subject(s)
Caenorhabditis elegans , Lipid Droplets , Pseudomonas aeruginosa , Humans , Lipid Droplets/metabolism , Animals , Caenorhabditis elegans/metabolism , Caenorhabditis elegans/genetics , HEK293 Cells , Pseudomonas aeruginosa/metabolism , Pseudomonas aeruginosa/genetics , Biological Clocks/genetics , Biological Evolution , Lipid Metabolism/genetics , Circadian Rhythm/genetics , Circadian Rhythm/physiology
2.
Genome Biol ; 22(1): 162, 2021 06 08.
Article in English | MEDLINE | ID: mdl-34099014

ABSTRACT

BACKGROUND: Circadian gene expression is essential for organisms to adjust their physiology and anticipate daily changes in the environment. The molecular mechanisms controlling circadian gene transcription are still under investigation. In particular, how chromatin conformation at different genomic scales and regulatory elements impact rhythmic gene expression has been poorly characterized. RESULTS: Here we measure changes in the spatial chromatin conformation in mouse liver using genome-wide and promoter-capture Hi-C alongside daily oscillations in gene transcription. We find topologically associating domains harboring circadian genes that switch assignments between the transcriptionally active and inactive compartment at different hours of the day, while their boundaries stably maintain their structure over time. To study chromatin contacts of promoters at high resolution over time, we apply promoter capture Hi-C. We find circadian gene promoters displayed a maximal number of chromatin contacts at the time of their peak transcriptional output. Furthermore, circadian genes, as well as contacted and transcribed regulatory elements, reach maximal expression at the same timepoints. Anchor sites of circadian gene promoter loops are enriched in DNA binding sites for liver nuclear receptors and other transcription factors, some exclusively present in either rhythmic or stable contacts. Finally, by comparing the interaction profiles between core clock and output circadian genes, we show that core clock interactomes are more dynamic compared to output circadian genes. CONCLUSION: Our results identify chromatin conformation dynamics at different scales that parallel oscillatory gene expression and characterize the repertoire of regulatory elements that control circadian gene transcription through rhythmic or stable chromatin configurations.


Subject(s)
Circadian Rhythm/genetics , Genome , Promoter Regions, Genetic , Animals , Base Sequence , Biological Clocks/genetics , Chromatin/metabolism , Enhancer Elements, Genetic , Gene Expression Regulation , Liver/metabolism , Male , Mice, Inbred C57BL , Models, Genetic , Time Factors , Transcription, Genetic
3.
Rev. Soc. Bras. Med. Trop ; Rev. Soc. Bras. Med. Trop;48(supl.1): 42-54, 2015. tab, graf
Article in English | LILACS | ID: lil-748361

ABSTRACT

In the State of Amazonas, Brazil, urban expansion together with precarious basic sanitation conditions and human settlement on river banks has contributed to the persistence of waterborne and intestinal parasitic diseases. Time series of the recorded cases of cholera, typhoid fever, hepatitis A and leptospirosis are described, using data from different levels of the surveillance systems. The sources for intestinal parasitosis prevalence data (non-compulsory reporting in Brazil) were Medical Literature Analysis and Retrieval System Online (MEDLINE), Literatura Latino-Americana (LILACS) and the annals of major scientific meetings. Relevant papers and abstracts in all languages were accessed by two independent reviewers. The references cited by each relevant paper were scrutinized to locate additional papers. Despite its initial dissemination across the entire State of Amazonas, cholera was controlled in 1998. The magnitude of typhoid fever has decreased; however, a pattern characterized by eventual outbreaks still remains. Leptospirosis is an increasing cause of concern in association with the annual floods. The overall prevalence of intestinal parasites is high regardless of the municipality and the characteristics of areas and populations. The incidence of hepatitis A has decreased over the past decade. A comparison of older and recent surveys shows that the prevalence of intestinal parasitic diseases has remained constant. The load of waterborne and intestinal parasitic diseases ranks high among the health problems present in the State of Amazonas. Interventions aiming at basic sanitation and vaccination for hepatitis A were formulated and implemented, but assessment of their effectiveness in the targeted populations is still needed.


Subject(s)
Animals , Adaptation, Physiological/genetics , Biological Clocks/genetics , CLOCK Proteins/genetics , Circadian Rhythm/genetics , Cyprinidae/genetics , Amino Acid Sequence , Base Sequence , Biological Evolution , Climate Change , Evolution, Molecular , Genetic Variation , Molecular Sequence Data , Phylogeny , Seasons , Sequence Analysis, DNA
4.
Biol. Res ; 48: 1-9, 2015. graf
Article in English | LILACS | ID: lil-734618

ABSTRACT

BACKGROUND: The aim of our research work was to quantify total flavonoid contents in the leaves of 13 plant species family Asteraceae, 8 representatives of family Lamiaceae and 9 plant species belonging to familyRosaceae, using the multiplex fluorimetric sensor. Fluorescence was measured using optical fluorescence apparatus Multiplex(R) 3 (Force-A, France) for non-destructive flavonoids estimation. The content of total flavonoids was estimated by FLAV index (expressed in relative units), that is deduced from flavonoids UV absorbing properties. RESULTS: Among observed plant species, the highest amount of total flavonoids has been found in leaves ofHelianthus multiflorus (1.65 RU) and Echinops ritro (1.27 RU), Rudbeckia fulgida (1.13 RU) belonging to the family Asteraceae. Lowest flavonoid content has been observed in the leaves of marigold (Calendula officinalis) (0.14 RU) also belonging to family Asteraceae. The highest content of flavonoids among experimental plants of family Rosaceae has been estimated in the leaves of Rosa canina (1.18 RU) and among plant species of family Lamiaceae in the leaves of Coleus blumei (0.90 RU). CONCLUSIONS: This research work was done as pre-screening of flavonoids content in the leaves of plant species belonging to family Asteraceae, Lamiaceae and Rosaceae. Results indicated that statistically significant differences (P > 0.05) in flavonoids content were observed not only between families, but also among individual plant species within one family.


Subject(s)
Animals , Humans , Mice , Biological Clocks/genetics , Casein Kinase 1 epsilon/deficiency , Circadian Rhythm/genetics , Mutation , tau Proteins/deficiency , tau Proteins/metabolism , Cell Line , Cells, Cultured , Casein Kinase 1 epsilon/antagonists & inhibitors , Casein Kinase 1 epsilon/physiology , Mice, Knockout , Mice, Transgenic , Nuclear Proteins/antagonists & inhibitors , Nuclear Proteins/deficiency , Nuclear Proteins/metabolism , Nuclear Proteins/physiology , Period Circadian Proteins , Phosphorylation , Suprachiasmatic Nucleus/physiology , Time Factors , tau Proteins/physiology
5.
Mol Vis ; 20: 742-52, 2014.
Article in English | MEDLINE | ID: mdl-24940028

ABSTRACT

PURPOSE: Circadian rhythms are central to vision and retinal physiology. A circadian clock located within the retina controls various rhythmic processes including melatonin synthesis in photoreceptors. In the present study, we evaluated the rhythmic expression of clock genes and clock output genes in retinal explants maintained for several days in darkness. METHODS: Retinas were dissected from Wistar rats, either wild-type or from the Per1-luciferase transgenic line housed under a daily 12 h:12 h light-dark cycle (LD12/12), and put in culture at zeitgeber time (ZT) 12 on semipermeable membranes. Explants from wild-type rats were collected every 4 h over 3 days, and total RNA was extracted, quantified, and reverse transcribed. Gene expression was assessed with quantitative PCR, and the periodicity of the relative mRNA amounts was assessed with nonlinear least squares fitting to sine wave functions. Bioluminescence in explants from Per1-luciferase rats was monitored for several days under three different culture protocols. RESULTS: Rhythmic expression was found for all studied clock genes and for clock downstream targets such as c-fos and arylalkylamine N-acetyltransferase (Aanat) genes. Clock and output genes cycled with relatively similar periods and acrophases (peaks of expression during subjective night, except c-fos, which peaked around the end of the subjective day). Data for Per1 were confirmed with bioluminescence monitoring, which also permitted culture conditions to be optimized to study the retina clock. CONCLUSIONS: Our work shows the free-running expression profile of multiple clock genes and potential clock targets in mammalian retinal explants. This research further strengthens the notion that the retina contains a self-sustained oscillator that can be functionally characterized in organotypic culture.


Subject(s)
CLOCK Proteins/genetics , Circadian Rhythm/genetics , Gene Expression Regulation , Retina/metabolism , Tissue Culture Techniques , Animals , Biological Clocks/genetics , CLOCK Proteins/metabolism , Cell Death/drug effects , Circadian Rhythm/drug effects , Culture Media/pharmacology , Gene Expression Regulation/drug effects , Luciferases/metabolism , Luminescent Measurements , Period Circadian Proteins/genetics , Period Circadian Proteins/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Rats , Rats, Wistar , Retina/cytology , Retina/drug effects , Time Factors
6.
Nutr Res ; 34(4): 326-35, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24774069

ABSTRACT

The main external time giver is the day-night cycle; however, signals from feeding and the activity/rest cycles can entrain peripheral clocks, such as the hippocampus, in the absence of light. Knowing that vitamin A and its derivatives, the retinoids, may act as regulators of the endogenous clock activity, we hypothesized that the nutritional deficiency of vitamin A may influence the locomotor activity rhythm as well as the endogenous circadian patterns of clock genes in the rat hippocampus. Locomotor activity was recorded during the last week of the treatment period. Circadian rhythms of clock genes expression were analyzed by reverse transcription-polymerase chain reaction in hippocampus samples that were isolated every 4 hours during a 24-hour period. Reduced glutathione (GSH) levels were also determined by a kinetic assay. Regulatory regions of clock PER2, CRY1, and CRY2 genes were scanned for RXRE, RARE, and RORE sites. As expected, the locomotor activity pattern of rats shifted rightward under constant dark conditions. Clock genes expression and GSH levels displayed robust circadian oscillations in the rat hippocampus. We found RXRE and RORE sites on regulatory regions of clock genes. Vitamin A deficiency dampened rhythms of locomotor activity as well as modified endogenous rhythms of clock genes expression and GSH levels. Thus, vitamin A may have a role in endogenous clock functioning and participate in the circadian regulation of the cellular redox state in the hippocampus, a peripheral clock with relevant function in memory and learning.


Subject(s)
Biological Clocks , Circadian Rhythm , Hippocampus/metabolism , Motor Activity/physiology , Period Circadian Proteins/metabolism , Vitamin A Deficiency/physiopathology , Vitamin A/metabolism , Animals , Biological Clocks/genetics , Circadian Rhythm/genetics , Gene Expression , Gene Expression Regulation , Glutathione/metabolism , Light , Male , Oxidation-Reduction , Period Circadian Proteins/genetics , Photoperiod , Rats , Rats, Sprague-Dawley
7.
PLoS One ; 6(10): e26291, 2011.
Article in English | MEDLINE | ID: mdl-22028849

ABSTRACT

The microarray technique allows the simultaneous measurements of the expression levels of thousands of mRNAs. By mining these data one can identify the dynamics of the gene expression time series. The detection of genes that are periodically expressed is an important step that allows us to study the regulatory mechanisms associated with the circadian cycle. The problem of finding periodicity in biological time series poses many challenges. Such challenge occurs due to the fact that the observed time series usually exhibit non-idealities, such as noise, short length, outliers and unevenly sampled time points. Consequently, the method for finding periodicity should preferably be robust against such anomalies in the data. In this paper, we propose a general and robust procedure for identifying genes with a periodic signature at a given significance level. This identification method is based on autoregressive models and the information theory. By using simulated data we show that the suggested method is capable of identifying rhythmic profiles even in the presence of noise and when the number of data points is small. By recourse of our analysis, we uncover the circadian rhythmic patterns underlying the gene expression profiles from Cyanobacterium Synechocystis.


Subject(s)
Circadian Rhythm/genetics , Cyanobacteria/genetics , Cyanobacteria/physiology , Gene Expression Profiling , Genes, Bacterial/genetics , Biological Clocks/genetics , Cyanobacteria/metabolism , Energy Metabolism/genetics , Entropy , Oligonucleotide Array Sequence Analysis , Photosynthesis , Time Factors
8.
Chronobiol Int ; 28(2): 89-100, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21231870

ABSTRACT

The avian circadian system is composed of the retina, the mammalian homolog region of the suprachiasmatic nucleus (SNC), and the pineal gland. The retina, itself, displays many rhythmic physiological events, such as movements of photoreceptor cells, opsin expression, retinal reisomerization, and melatonin and dopamine production and secretion. Altogether, these rhythmic events are coordinated to predict environmental changes in light conditions during the day, optimizing retina function. The authors investigated the expression pattern of the melanopsin genes Opn4x and Opn4m, the clock genes Clock and Per2, and the genes for the key enzymes N-Acetyltransferase and Tyrosine Hidroxylase in chicken embryo dispersed retinal cells. Primary cultures of chicken retina from 8-day-old embryos were kept in constant dark (DD), in 12-h light/12-h dark (12L:12D), in 12L:12D followed by DD, or in DD in the absence or presence of 100 µM glutamate for 12 h. Total RNA was extracted throughout a 24-h span, every 3 h starting at zeitgeber time 0 (ZT0) of the 6th day, and submitted to reverse transcriptase-polymerase chain reaction (RT-PCR) followed by quantitative PCR (qPCR) for mRNA quantification. The data showed no rhythmic pattern of transcription for any gene in cells kept in DD. However under a light-dark cycle, Clock, Per2, Opn4m, N-Acetyltransferase, and Tyrosine Hydroxylase exhibited rhythmic patterns of transcription. In DD, 100 µM glutamate was able to induce rhythmic expression of Clock, strongly inhibited the expression of Tyrosine Hydroxylase, and, only at some ZTs, of Opn4x and Opn4m. The neurotransmitter had no effect on Per2 and N-Acetyltransferase transcription. The authors confirmed the expression of the protein OPN4x by immunocytochemistry. These results suggest that chicken embryonic retinal cells contain a functional circadian clock, whose synchronization requires light-dark cycle or glutamate stimuli.


Subject(s)
CLOCK Proteins/genetics , Dopamine/metabolism , Glutamic Acid/metabolism , Light , Melatonin/metabolism , Retina , Rod Opsins/metabolism , Animals , Biological Clocks/genetics , CLOCK Proteins/metabolism , Cell Survival , Cells, Cultured , Chick Embryo , Circadian Rhythm/physiology , Gene Expression , Melatonin/genetics , Photoperiod , Retina/cytology , Retina/metabolism , Retina/physiology , Rod Opsins/genetics , Tyrosine 3-Monooxygenase/genetics , Tyrosine 3-Monooxygenase/metabolism
9.
Chronobiol Int ; 27(2): 265-77, 2010 Jan.
Article in English | MEDLINE | ID: mdl-20370469

ABSTRACT

Sleep patterns, frequently altered in depression, have been hypothesized to be under genetic control. The circadian locomotor output cycles kaput (CLOCK) T3111C variant has been studied in association with sleep disturbances in depressed patients. The aim of this study was to investigate possible effects of T3111C CLOCK on insomnia, daytime sleepiness, sleep quality, and depression severity in a sample of 100 major depressive disorder patients. Inclusion criteria were: major depressive disorder, drug-free for any antidepressant and/or benzodiazepines for at least four weeks previously to the study, and a minimum score of >17 on the Hamilton Rating Scale for Depression. The Morningness-Eveningness Questionnaire, Epworth Sleepiness Scale, Athens Insomnia Scale, and Pittsburgh Sleep Quality Index were applied. No significant difference was found concerning genotype or allele groups and Hamilton Rating Scale for Depression items or clusters. No difference was found between genotypes and comorbidity, chronotype distribution, Epworth Sleepiness Scale, Athens Insomnia Scale, or Pittsburgh Sleep Quality Index total scores. Overall, the present findings did not support the hypothesis of an effect of the T3111C CLOCK variant on sleep disturbances in major depressive disorder. Further analysis of clock machinery will clarify the contribution of clock genes to the maintenance of mental health.


Subject(s)
Biological Clocks/genetics , CLOCK Proteins/genetics , Circadian Rhythm/genetics , Depressive Disorder, Major , Polymorphism, Genetic , Sleep Wake Disorders , Adolescent , Adult , Depressive Disorder, Major/genetics , Depressive Disorder, Major/physiopathology , Female , Humans , Male , Mexico , Middle Aged , Sleep Wake Disorders/genetics , Sleep Wake Disorders/physiopathology , Surveys and Questionnaires , Young Adult
10.
J Biol Rhythms ; 24(6): 444-51, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19926804

ABSTRACT

Different mosquito species show a full range of activity patterns, including diurnal, crepuscular, and nocturnal behaviors. Although activity and blood-feeding rhythms are controlled by the circadian clock, it is not yet known whether such species-specific differences in behavior are controlled directly by core clock genes or instead reflect differences in how the information of the central clock is translated into output signals. The authors have analyzed the circadian expression of clock genes in two important mosquito vectors of tropical diseases, Aedes aegypti and Culex quinquefasciatus . Although these two species show very different locomotor activity patterns and are estimated to have diverged more than 22 million years ago, they show conserved circadian expression patterns for all major cycling clock genes except mammalian-like cryptochrome2 (cry2). The results indicate that different mechanisms for cry2 regulation may exist for the two species. The authors speculate that the correlation between the differences in behavior between Ae. aegypti and Cx. quinquefasciatus and their corresponding cry2 mRNA profiles suggests a potential role for this clock gene in controlling species-specific rhythmic behavior. However, further work is needed to establish that this is the case as the different cry2 expression patterns might reflect differences between the Aedes and Culex lineages that are not directly related to changes in behavior.


Subject(s)
Aedes/genetics , Biological Clocks/genetics , Circadian Rhythm/genetics , Cryptochromes/genetics , Culex/genetics , Gene Expression/genetics , RNA, Messenger/genetics , Animals , Darkness , Female , Light
11.
Braz J Psychiatry ; 31(1): 63-71, 2009 Mar.
Article in Portuguese | MEDLINE | ID: mdl-19506779

ABSTRACT

OBJECTIVE: The aim of this study was to review the molecular chronobiology studies in the last 36 years in order Eto point out the advances in this area to health professionals. METHOD: We searched in the PubMed and Scopus data banks for articles related with human molecular chronobiology. The keywords used were 'clock genes, circadian rhythms, diurnal preference, delayed sleep phase syndrome, advanced sleep phase syndrome, photoperiod and mood disorder'. DISCUSSION: The knowledge about molecular mechanism of circadian rhythms increased a lot in the last years and now we are able to better understand the details of molecular processes involved in circadian and sleep regulation. Studies show that polymorphisms in clock genes are associated with sleep and mood disorders. These studies will be helpful to further elucidate the regulation of molecular mechanisms of circadian rhythms. CONCLUSIONS: The development of these studies in molecular chronobiology can be helpful to treat circadian and mood disorders and to prevent health risks caused by intercontinental flights (Jet Lag), nocturnal or shift work schedule.


Subject(s)
Biological Clocks/genetics , Circadian Rhythm/genetics , Mood Disorders/genetics , Sleep Wake Disorders/genetics , Sleep/genetics , Humans , Phenotype , Sleep Stages/physiology , Sleep Wake Disorders/physiopathology
12.
Braz. J. Psychiatry (São Paulo, 1999, Impr.) ; Braz. J. Psychiatry (São Paulo, 1999, Impr.);31(1): 63-71, Mar. 2009. ilus, tab
Article in Portuguese | LILACS | ID: lil-509190

ABSTRACT

OBJETIVO: Revisar resumidamente a literatura dos últimos 36 anos de pesquisa em cronobiologia molecular a fim de informar aos profissionais de saúde os avanços obtidos nesta área e os potenciais para aplicação na clínica médica. MÉTODO: Buscas na literatura foram realizadas utilizando as bases de dados PubMed e Scopus usando como palavras-chave "clock genes, circadian rhythms, diurnal preference, delayed sleep phase syndrome, advanced sleep phase syndrome, photoperiod and mood disorder". DISCUSSÃO: Atualmente, o mecanismo molecular da regulação da ritmicidade circadiana é compreendido em grande detalhe. Muitos estudos publicados mostram associações de polimorfismos nos genes relógio com transtornos do ritmo circadiano e com transtornos do humor. CONCLUSÕES: De maneira geral, o progresso obtido na área de cronobiologia molecular traz um melhor entendimento da regulação do sistema de temporização biológico. O desenvolvimento de estudos nesta área tem o potencial de ser aplicável ao tratamento dos transtornos dos ritmos circadianos e certos transtornos do humor, além de prevenir riscos à saúde causados por viagens intercontinentais (Jet Lag) e por trabalhos noturnos e por turnos.


OBJECTIVE: The aim of this study was to review the molecular chronobiology studies in the last 36 years in order Eto point out the advances in this area to health professionals. METHOD: We searched in the PubMed and Scopus data banks for articles related with human molecular chronobiology. The keywords used were "clock genes, circadian rhythms, diurnal preference, delayed sleep phase syndrome, advanced sleep phase syndrome, photoperiod and mood disorder". DISCUSSION: The knowledge about molecular mechanism of circadian rhythms increased a lot in the last years and now we are able to better understand the details of molecular processes involved in circadian and sleep regulation. Studies show that polymorphisms in clock genes are associated with sleep and mood disorders. These studies will be helpful to further elucidate the regulation of molecular mechanisms of circadian rhythms. CONCLUSIONS: The development of these studies in molecular chronobiology can be helpful to treat circadian and mood disorders and to prevent health risks caused by intercontinental flights (Jet Lag), nocturnal or shift work schedule.


Subject(s)
Humans , Biological Clocks/genetics , Circadian Rhythm/genetics , Mood Disorders/genetics , Sleep Wake Disorders/genetics , Sleep/genetics , Phenotype , Sleep Wake Disorders/physiopathology , Sleep Stages/physiology
13.
Braz J Med Biol Res ; 41(8): 716-21, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18797707

ABSTRACT

Individual circadian clocks entrain differently to environmental cycles (zeitgebers, e.g., light and darkness), earlier or later within the day, leading to different chronotypes. In human populations, the distribution of chronotypes forms a bell-shaped curve, with the extreme early and late types _ larks and owls, respectively _ at its ends. Human chronotype, which can be assessed by the timing of an individual's sleep-wake cycle, is partly influenced by genetic factors - known from animal experimentation. Here, we review population genetic studies which have used a questionnaire probing individual daily timing preference for associations with polymorphisms in clock genes. We discuss their inherent limitations and suggest an alternative approach combining a short questionnaire (Munich ChronoType Questionnaire, MCTQ), which assesses chronotype in a quantitative manner, with a genome-wide analysis (GWA). The advantages of these methods in comparison to assessing time-of-day preferences and single nucleotide polymorphism genotyping are discussed. In the future, global studies of chronotype using the MCTQ and GWA may also contribute to understanding the influence of seasons, latitude (e.g., different photoperiods), and climate on allele frequencies and chronotype distribution in different populations.


Subject(s)
Biological Clocks/genetics , Polymorphism, Genetic , Surveys and Questionnaires , Biological Clocks/physiology , Genotype , Geography , Humans , Phenotype
14.
Rev. bras. pesqui. méd. biol ; Braz. j. med. biol. res;41(8): 716-721, Aug. 2008. tab
Article in English | LILACS | ID: lil-491931

ABSTRACT

Individual circadian clocks entrain differently to environmental cycles (zeitgebers, e.g., light and darkness), earlier or later within the day, leading to different chronotypes. In human populations, the distribution of chronotypes forms a bell-shaped curve, with the extreme early and late types _ larks and owls, respectively _ at its ends. Human chronotype, which can be assessed by the timing of an individual's sleep-wake cycle, is partly influenced by genetic factors - known from animal experimentation. Here, we review population genetic studies which have used a questionnaire probing individual daily timing preference for associations with polymorphisms in clock genes. We discuss their inherent limitations and suggest an alternative approach combining a short questionnaire (Munich ChronoType Questionnaire, MCTQ), which assesses chronotype in a quantitative manner, with a genome-wide analysis (GWA). The advantages of these methods in comparison to assessing time-of-day preferences and single nucleotide polymorphism genotyping are discussed. In the future, global studies of chronotype using the MCTQ and GWA may also contribute to understanding the influence of seasons, latitude (e.g., different photoperiods), and climate on allele frequencies and chronotype distribution in different populations.


Subject(s)
Humans , Biological Clocks/genetics , Polymorphism, Genetic , Surveys and Questionnaires , Biological Clocks/physiology , Genotype , Geography , Phenotype
15.
Eur J Neurosci ; 27(2): 396-407, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18215236

ABSTRACT

Great efforts have been directed to the dissection of the cell-autonomous circadian oscillator in Drosophila. However, less information is available regarding how this oscillator controls rhythmic rest-activity cycles. We have identified a viable allele of roundabout, robo(hy), where the period of locomotor activity is shortened. From its role in axon-pathfinding, we anticipated developmental defects in clock-relevant structures. However, robo(hy) produced minor defects in the architecture of the circuits essential for rhythmic behaviour. ROBO's presence within the circadian circuit strengthened the possibility of a novel role for ROBO at this postdevelopmental stage. Genetic interactions between pdf (01) and robo(hy) suggest that ROBO could alter the communication within different clusters of the circadian network, thus impinging on two basic properties, periodicity and/or rhythmicity. Early translocation of PERIOD to the nucleus in robo(hy) pacemaker cells indicated that shortened activity rhythms were derived from alterations in the molecular oscillator. Herein we present a mutation affecting clock function associated with a molecule involved in circuit assembly and maintenance.


Subject(s)
Biological Clocks/genetics , Circadian Rhythm/genetics , Drosophila Proteins/genetics , Nerve Tissue Proteins/genetics , Receptors, Immunologic/genetics , Animals , Biological Clocks/physiology , Circadian Rhythm/physiology , Drosophila , Drosophila Proteins/physiology , Female , Male , Motor Activity/genetics , Motor Activity/physiology , Mutation/genetics , Mutation/physiology , Nerve Tissue Proteins/physiology , Receptors, Immunologic/physiology , Roundabout Proteins
16.
FEBS Lett ; 580(1): 2-8, 2006 Jan 09.
Article in English | MEDLINE | ID: mdl-16337945

ABSTRACT

Despite the importance of circadian rhythms in vector-borne disease transmission, very little is known about its molecular control in hematophagous insect vectors. In Drosophila melanogaster, a negative feedback loop of gene expression has been shown to contribute to the clock mechanism. Here, we describe some features of the circadian clock of the sandfly Lutzomyia longipalpis, a vector of visceral leishmaniasis. Compared to D. melanogaster, sandfly period and timeless, two negative elements of the feedback loop, show similar peaks of mRNA abundance. On the other hand, the expression of Clock (a positive transcription factor) differs between the two species, raising the possibility that the different phases of Clock expression could be associated with the observed differences in circadian activity rhythms. In addition, we show a reduction in locomotor activity after a blood meal, which is correlated with downregulation of period and timeless expression levels. Our results suggest that the circadian pacemaker and its control over the activity rhythms in this hematophagous insect are modulated by blood intake.


Subject(s)
Biological Clocks/genetics , Circadian Rhythm/genetics , Down-Regulation/physiology , Insect Proteins/genetics , Insect Vectors/physiology , Psychodidae/physiology , Animals , Drosophila melanogaster , Eating/physiology , Female , Leishmaniasis, Visceral/transmission , Male
17.
Front Biosci ; 8: s285-93, 2003 May 01.
Article in English | MEDLINE | ID: mdl-12700026

ABSTRACT

Mammalian circadian rhythms are generated by the hypothalamic suprachiasmatic nuclei and finely tuned to environmental periodicities by neurochemical responses to the light-dark cycle. Light reaches the clock through a direct retinohypothalamic tract, primarily through glutamatergic innervation, and its action is probably regulated by a variety of other neurotransmitters. A key second messenger in circadian photic entrainment is calcium, mobilized through membrane channels or intracellular reservoirs, which triggers the activation of several enzymes, including a calcium/calmodulin-dependent protein kinase and nitric oxide synthase. Other enzymes activated by light are mitogen-activated- and cGMP-dependent protein kinase; all of the above have been reported to be involved in the circadian responses to nocturnal light pulses. These mechanisms lead to expression of specific clock genes which eventually set the phase of the clock and of clock-controlled circadian rhythms.


Subject(s)
Biological Clocks/genetics , Circadian Rhythm/genetics , Genes/physiology , Light , Animals , Humans
18.
J Mol Evol ; 55(5): 553-62, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12399929

ABSTRACT

The molecular evolution of the clock gene period was studied in Phlebotomine sandflies (Diptera: Psychodidae). Comparison of the synonymous and nonsynonymous substitution rates between sandflies and Drosophila revealed a significantly higher evolutionary rate in the latter in three of the four regions analyzed. The differences in rate were higher in the sequences flanking the Thr-Gly repetitive domain, a region that has expanded in Drosophila but remained stable and short in sandflies, a result consistent with the coevolutionary scenario proposed for this region of the gene. An initial phylogenetic analysis including eight neotropical sandfly species and one from the Old World was also carried out. The results showed that only the subgenus Nyssomyia is well supported by distance (neighbor-joining) and maximum parsimony analysis. The grouping of the other species from the subgenus Lutzomyia and Migonei group shows very low bootstrap values and is not entirely consistent with classical morphological systematics of the genus Lutzomyia.


Subject(s)
Evolution, Molecular , Genes, Insect , Nuclear Proteins/genetics , Psychodidae/genetics , Amino Acid Sequence , Animals , Base Sequence , Biological Clocks/genetics , DNA/genetics , Drosophila Proteins , Molecular Sequence Data , Period Circadian Proteins , Phylogeny , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid
19.
Braz J Med Biol Res ; 29(1): 77-85, 1996 Jan.
Article in English | MEDLINE | ID: mdl-8731335

ABSTRACT

Circadian rhythms in mammals are generated by pacemaker cells located in the suprachiasmatic nucleus (SCN) of the anterior hypothalamus. The identity of these cells, however, is not known, and little information exists regarding the mechanisms by which they communicate with each other and with the organism. Nonetheless, pacemaker interactions must occur to produce single, coherent rhythms of behavior and physiology. Recently it has become possible to observe the result of these interactions using circadian chimeras, animals with two clocks with distinct periods, that have been produced by SCN transplantation. Using the tau mutation in golden hamsters, chimeras expressing two circadian rhythms of behavior simultaneously were created. The two rhythms exhibited complex interactions including cases of relative coordination. This basic result indicates that pacemaker interactions are rhythmic and phase dependent. Further analysis should help to elucidate the nature of the coupling signal and the identity of the pacemaker cells.


Subject(s)
Circadian Rhythm/physiology , Suprachiasmatic Nucleus/physiology , Animals , Biological Clocks/genetics , Biological Clocks/physiology , Chimera/physiology , Cricetinae , Hypothalamus, Anterior/physiology , Mesocricetus/physiology
20.
Rev. bras. pesqui. méd. biol ; Braz. j. med. biol. res;29(1): 77-85, Jan. 1996. ilus
Article in English | LILACS | ID: lil-161656

ABSTRACT

Circadian rhythms in mammals are generated by pacemaker cells located in the suprachiasmatic nucleus (SCN) of the anterior hypothalamus. The identity of these cells, however, is not known, and little information exists regarding the mechanisms by which they communicate with each other and with the organism. Nonetheless, pacemaker interactions must occur to produce single, coherent rhythms of behavior and physiology. Recently it has become possible to observe the result of these interactions using circadian chimeras, animals with two clocks with distinct periods, that have been produced by SCN transplantation. Using the tau mutation in golden hamsters, chimeras expressing two circadian rhythms of behavior simultaneously were created. The two rhythms exhibited complex interactions including cases of relative coordination. This basic result indicates that pacemaker interactions are rhythmic and phase dependent. Further analysis should help to elucidate the nature of the coupling signal and the identity of the pacemaker cells.


Subject(s)
Animals , Cricetinae , Circadian Rhythm/physiology , Suprachiasmatic Nucleus/physiology , Hypothalamus, Anterior/physiology , Mesocricetus/physiology , Biological Clocks/physiology , Biological Clocks/genetics
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