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1.
J Mol Biol ; 434(5): 167456, 2022 03 15.
Article in English | MEDLINE | ID: mdl-35045329

ABSTRACT

The metamorphosis of a caterpillar into a butterfly is an awe-inspiring example of how extraordinary functions are made possible through specific chemistry in nature's complex systems. The chrysalis exoskeleton is revealed and shed as a caterpillar transitions to butterfly form. We employed solid-state NMR to evaluate the chemical composition and types of biomolecules in the chrysalides from which Monarch and Swallowtail butterflies emerged. The chrysalis composition was remarkably similar between Monarch and Swallowtail. Chitin is the major polysaccharide component, present together with proteins and catechols or catechol-type linkages in each chrysalis. The high chitin content is comparable to the highest chitin-containing insect exoskeletons. Proteomics analyses indicated the presence of chitinases that could be involved in synthesis and remodeling of the chrysalis as well as cuticular proteins which play a role in the structural integrity of the chrysalis. The nearly identical 13C CPMAS NMR spectra of each chrysalis and similar structural proteins supports the presence of underlying design principles integrating chitin and protein partners to elaborate the chrysalis.


Subject(s)
Butterflies , Chitin , Pupa , Animals , Butterflies/chemistry , Butterflies/growth & development , Chitin/analysis , Chitin/metabolism , Chitinases/analysis , Chitinases/metabolism , Insect Proteins/analysis , Insect Proteins/metabolism , Pupa/chemistry
2.
Microbiol Res ; 237: 126482, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32353683

ABSTRACT

Seed biopriming is an emerging technique to enhance seed germination under stress conditions. An integrated approach of tomato seed biopriming with ascorbic acid, Trichoderma asperellum BHU P-1 and Ochrobactrum sp. BHU PB-1 was applied to observe the response against wilt pathogen of tomato Fusarium oxysporum f. sp. lycopersici (FOL). Tomato seeds bioprimed with the aforementioned application expressed augmented seed germination and activated of defense response. Seed germination was recorded higher (80 %) at low concentration (1 pM) of ascorbic acid as compared to high concentration of 1 mM (41 %). Combination of both ascorbic acid and antagonistic microbe treatments (T5 & T6) significantly reduced disease incidence (up to 28 %) in tomato plants at 10 days. T5 and T6 treated plants exhibited higher accumulation of total phenol content and increased activity of Phenylammonia lyase (PAL), Peroxidase (PO), Chitinase (Chi) and Polyphenol oxidase (PPO) as compared to control (T1) plants. ROS formation in the form of H2O2 was also found to be reduced in combined treatment. Histochemical analysis revealed that phenylpropanoid pathway (lignin deposition) was more activated in combined priming treatment plants as compared to individual treatment upon challenge inoculation with FOL. Transcript expression analysis of defense genes confirmed the up-regulation of PAL (2.1 fold), Chi (0.92 fold), Pathogenesis related proteins (PR) (1.58 fold) and Lipoxygenase (Lox) (0.72 fold) in T6 treatment as compared to T1 treatment plants at 96 h. This study reveals that ascorbic acid treatment with antagonistic microbes through seed priming effectively induced seed germination and elicited defense mechanism to control wilt disease in tomato plants.


Subject(s)
Antibiosis , Disease Resistance , Fusariosis/prevention & control , Seeds , Solanum lycopersicum , Ascorbic Acid/pharmacology , Biological Control Agents/pharmacology , Catechol Oxidase/analysis , Chitinases/analysis , Disease Resistance/genetics , Fusariosis/drug therapy , Fusarium/drug effects , Fusarium/pathogenicity , Gene Expression , Genes, Plant , Hydrogen Peroxide/analysis , Hypocreales , Lignin/metabolism , Solanum lycopersicum/growth & development , Solanum lycopersicum/metabolism , Solanum lycopersicum/microbiology , Ochrobactrum , Phenol/analysis , Phenylammonium Compounds/analysis , Plant Diseases/prevention & control , Seeds/growth & development , Seeds/metabolism , Seeds/microbiology
3.
J Neuroinflammation ; 17(1): 58, 2020 Feb 17.
Article in English | MEDLINE | ID: mdl-32066474

ABSTRACT

BACKGROUND: Chitinase 3-like 1 (CHI3L1), chitinase 3-like 2 (CHI3L2), and neuronal pentraxin II (NPTX2) are inflammatory biomarkers of Alzheimer's disease (AD). Although studies have demonstrated that cerebrospinal fluid levels of these proteins are changed in AD, no studies have undertaken a detailed examination of alterations in protein levels, cellular expression, and interaction with amyloid in the brain during the progression of AD. METHODS: The study evaluated levels of both CHI3L1 and CHI3L2, NPTX2, ionized calcium-binding adapter molecule 1 (Iba1), complement component 1q (C1q), glial fibrillary acidic protein (GFAP), and CD44, in the frontal cortex of people who died with an antemortem clinical diagnosis of no cognitive impairment (NCI), mild cognitive impairment (MCI), mild/moderate AD (mAD), and severe AD (sAD) using immunoblot and immunohistochemical techniques. RESULTS: CHI3L1-immunoreactive (-ir) astrocyte numbers were increased in the frontal cortex and white matter in sAD compared to NCI. On the other hand, increases in GFAP and Iba1-ir cell numbers were observed in MCI compared to NCI but only in white matter. Western blot analyses revealed significantly lower frontal cortex CHI3L2 levels, whereas CD44 levels were increased in sAD. No significant differences for CHI3L1, GFAP, C1q, and NPTX2 protein levels were detected between clinical groups. Strong significant correlations were found between frontal cortex CHI3L1 and Iba1-ir cell numbers in white matter and CHI3L1 and C1q protein levels in the early stages of the disease. C1q and Iba1, CD44 with CHI3L2, and GFAP protein levels were associated during disease progression. CHI3L1 and Iba1 cell numbers in white matter showed a significant associations with episodic memory and perceptual speed. CONCLUSIONS: White matter CHI3L1 inflammatory response is associated with cognitive impairment early in the onset of AD.


Subject(s)
Alzheimer Disease/metabolism , C-Reactive Protein/metabolism , Chitinase-3-Like Protein 1/metabolism , Disease Progression , Frontal Lobe/metabolism , Inflammation Mediators/metabolism , Nerve Tissue Proteins/metabolism , Aged , Aged, 80 and over , Alzheimer Disease/pathology , C-Reactive Protein/analysis , Chitinase-3-Like Protein 1/analysis , Chitinases/analysis , Chitinases/metabolism , Female , Frontal Lobe/pathology , Humans , Inflammation Mediators/analysis , Male , Nerve Tissue Proteins/analysis
4.
Virus Res ; 263: 151-158, 2019 04 02.
Article in English | MEDLINE | ID: mdl-30711578

ABSTRACT

The Autographa californica multiple nucleopolyhedrovirus (AcMNPV) ac124 gene has been previously characterized as a viral pathogenicity factor. In this study, an ac124-knockout virus (vAc124KO) was generated to examine the role of the ac124 gene in the context of the AcMNPV genome during infection. Our results showed that the absence of ac124 does not affect the production of budded virus (BV) and occlusion bodies (OBs) in infected Sf9 cells. Western blotting analysis showed that the deletion of ac124 does not affect the temporal expression and the relative levels of GP64, VP39, P6.9, and polyhedrin. qRT-PCR analysis showed that the transcription level of chitinase but not the adjacent cathepsin in vAc124KO infected cells was significantly lower than that of the vAcWT infected cells from 24 to 96 h p.i. Luciferase assays showed that the overexpression of Ac124 could significantly improve the ability of chitinase promoter to initiate reporter genes. Based on the above data, we hypothesize that Ac124 binds to the promoter of chitinase to regulate the expression of chitinase gene.


Subject(s)
Chitinases/biosynthesis , Gene Deletion , Gene Expression Regulation, Viral , Nucleopolyhedroviruses/genetics , Transcription, Genetic , Viral Proteins/genetics , Animals , Blotting, Western , Chitinases/analysis , Nucleopolyhedroviruses/growth & development , Promoter Regions, Genetic , Protein Binding , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Sf9 Cells , Spodoptera
5.
Food Chem ; 282: 76-83, 2019 Jun 01.
Article in English | MEDLINE | ID: mdl-30711108

ABSTRACT

Honey, as a commercial product, is a target of adulteration through inappropriate production practices and deliberate mislabelling of botanical origin. Floral nectar protein could be a good marker for determining the source flowers of honey, especially monofloral honeys. Here, nectar and monofloral honey from Eriobotrya japonica Lindl. (loquat) were systematically compared, especially regarding proteomic and enzymatic activity. Using two-dimensional electrophoresis and mass spectrometry, only bee-originated proteins were detected in loquat honey. Xylosidase, thaumatin, and two kinds of chitinases were detected in loquat floral nectar, and their activity in loquat nectar and honey were quantified. Following gel electrophoresis, loquat honey had similar chitinase activity profiles to loquat nectar, but both were clearly distinguishable from Camellia sinensis nectar and Brassica napus honey. To our knowledge, this is the first examination of nectar-origin enzyme activity in honey. Zymography of chitinases is a potential marker for determining or authenticating the botanical origin of honeys.


Subject(s)
Biomarkers/analysis , Chitinases/analysis , Eriobotrya/metabolism , Honey/analysis , Mass Spectrometry , Animals , Bees , Electrophoresis, Gel, Two-Dimensional , Eriobotrya/chemistry , Flowers/enzymology , Plant Nectar/metabolism , Proteomics
6.
Food Microbiol ; 78: 201-210, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30497604

ABSTRACT

Protein precipitation, also referred to as protein instability, may lead to haziness in bottled wines and result in significant commercial losses. To avoid problems of this nature, fining finished wines with clay (bentonite) is the most commonly applied methodology. However, bentonite fining reduces yield and may affect wine quality. Protein haze has been primarily linked to grape pathogenesis-related proteins, in particular chitinases and thaumatin-like proteins. To better understand the persistence of these proteins during fermentation, reverse phase chromatography was used to monitor the evolution of total grape proteins as well as of chitinases and thaumatin-like proteins during alcoholic fermentation. The data confirm a previously reported significant decrease in total protein content during fermentation. This reduction in total protein levels was observed throughout fermentation, and was affected by factors such as fermentation temperature, yeast strain or grape cultivar. However, significant changes in the concentration of free chitinases were observed in a yeast strain-dependent manner. The data thus confirm the correlation between the levels of yeast cell wall chitin and changes in chitinase concentration, and suggest that it is primarily the amount of lateral chitin, and not the chitin in bud scars, that is responsible for this activity.


Subject(s)
Chitinases/analysis , Fermentation , Plant Proteins/analysis , Vitis/metabolism , Wine/analysis , Cell Wall/chemistry , Chitin/analysis , Chitin/metabolism , Chitinases/metabolism , Plant Proteins/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/metabolism , Temperature , Vitis/chemistry
7.
J Immunoassay Immunochem ; 40(2): 139-148, 2019.
Article in English | MEDLINE | ID: mdl-30346872

ABSTRACT

The incidence of grape (Vitis vinifera) allergy in the northeast of Iran is second to melon allergy. Type IV chitinase is one of the major grape allergens. The current study investigates the level of type IV chitinase in four grape variants for the first time in Khorasan Razavi Province using a highly sensitive sandwich enzyme-linked immunosorbent assay (ELISA). This assay was developed using a polyclonal antibody as a capture antibody and monoclonal antibody as a secondary one. Finally, the amount of type IV chitinase was measured by the validated ELISA test. The sensitivity of the developed sandwich ELISA is 16 ± 0.05 ng/ml, and its mean coefficients of intraday and interday variations are <5% and <15%, respectively. The recovery of the designed ELISA is 64 ± 0.9 %. The assessments showed that the highest level of type IV chitinase was 39.7 ± 2.3 µg/g in Peykani grape, whereas in the Sultana cultivar, it was 1.76 ± 0.1 µg/g. According to the data, the level of type IV chitinase is variable in different cultivars, and hence, it will be helpful for clinicians to recommend a less allergenic variety to the patient.


Subject(s)
Allergens/analysis , Chitinases/analysis , Enzyme-Linked Immunosorbent Assay , Vitis/chemistry , Allergens/immunology , Antibodies/immunology , Antigen-Antibody Reactions , Chitinases/immunology , Iran , Vitis/immunology
8.
Article in English | MEDLINE | ID: mdl-29733998

ABSTRACT

Chitinases (Chts) and chitin deacetylases (CDAs) are important enzymes required for chitin metabolism in insects. In this study, 12 Cht-related genes (including seven Cht genes and five imaginal disc growth factor genes) and 6 CDA genes (encoding seven proteins) were identified in Bactrocera dorsalis using genome-wide searching and transcript profiling. Based on the conserved sequences and phylogenetic relationships, 12 Cht-related proteins were clustered into eight groups (group I-V and VII-IX). Further domain architecture analysis showed that all contained at least one chitinase catalytic domain, however, only four (BdCht5, BdCht7, BdCht8 and BdCht10) possessed chitin-binding domains. The subsequent phylogenetic analysis revealed that seven CDAs were clustered into five groups (group I-V), and all had one chitin deacetylase catalytic domain. However, only six exhibited chitin-binding domains. Finally, the development- and tissue-specific expression profiling showed that transcript levels of the 12 Cht-related genes and 6 CDA genes varied considerably among eggs, larvae, pupae and adults, as well as among different tissues of larvae and adults. Our findings illustrate the structural differences and expression patterns of Cht and CDA genes in B. dorsalis, and provide important information for the development of new pest control strategies based on these vital enzymes.


Subject(s)
Amidohydrolases/genetics , Chitinases/genetics , Gene Expression Profiling , Insect Proteins/genetics , Multigene Family , Tephritidae/genetics , Amidohydrolases/analysis , Amino Acid Sequence , Animals , Catalytic Domain , Chitinases/analysis , Female , Gene Expression Regulation, Developmental , Genome, Insect , Insect Proteins/analysis , Male , Phylogeny , Sequence Alignment , Tephritidae/chemistry
9.
Appl Environ Microbiol ; 84(7)2018 04 01.
Article in English | MEDLINE | ID: mdl-29374042

ABSTRACT

Members of the bacterial order Planctomycetales have often been observed in associations with Crustacea. The ability to degrade chitin, however, has never been reported for any of the cultured planctomycetes although utilization of N-acetylglucosamine (GlcNAc) as a sole carbon and nitrogen source is well recognized for these bacteria. Here, we demonstrate the chitinolytic capability of a member of the family Gemmataceae, Fimbriiglobus ruber SP5T, which was isolated from a peat bog. As revealed by metatranscriptomic analysis of chitin-amended peat, the pool of 16S rRNA reads from F. ruber increased in response to chitin availability. Strain SP5T displayed only weak growth on amorphous chitin as a sole source of carbon but grew well with chitin as a source of nitrogen. The genome of F. ruber SP5T is 12.364 Mb in size and is the largest among all currently determined planctomycete genomes. It encodes several enzymes putatively involved in chitin degradation, including two chitinases affiliated with the glycoside hydrolase (GH) family GH18, GH20 family ß-N-acetylglucosaminidase, and the complete set of enzymes required for utilization of GlcNAc. The gene encoding one of the predicted chitinases was expressed in Escherichia coli, and the endochitinase activity of the recombinant enzyme was confirmed. The genome also contains genes required for the assembly of type IV pili, which may be used to adhere to chitin and possibly other biopolymers. The ability to use chitin as a source of nitrogen is of special importance for planctomycetes that inhabit N-depleted ombrotrophic wetlands.IMPORTANCE Planctomycetes represent an important part of the microbial community in Sphagnum-dominated peatlands, but their potential functions in these ecosystems remain poorly understood. This study reports the presence of chitinolytic potential in one of the recently described peat-inhabiting members of the family Gemmataceae, Fimbriiglobus ruber SP5T This planctomycete uses chitin, a major constituent of fungal cell walls and exoskeletons of peat-inhabiting arthropods, as a source of nitrogen in N-depleted ombrotrophic Sphagnum-dominated peatlands. This study reports the chitin-degrading capability of representatives of the order Planctomycetales.


Subject(s)
Chitin/metabolism , Genome, Bacterial , Planctomycetales/genetics , Chitinases/analysis , Planctomycetales/metabolism , RNA, Bacterial/analysis , RNA, Ribosomal, 16S/analysis , Russia , Soil , Wetlands
10.
J Basic Microbiol ; 58(3): 277-282, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29226976

ABSTRACT

Beauveria bassiana is a broad spectrum microbial bioagent used for the control of agriculturally important insect pests. However, in our experiments, two virulent isolates of B. bassiana (B2 and B10) showed specific preference toward Maruca vitrata and Helicoverpa armigera of pigeonpea. To better understand this feature, we developed a qPCR assay to quantify the chitinase (virulence factor) of B. bassiana during the infection process. Isolates of B. bassiana were grown on insect cuticle amended medium and minimal medium (without insect cuticle) to assess the induction of chitinase. Our results revealed a positive correlation between expression of chitinase by B. bassiana and the substrates (with or without cuticles of M. vitrata and H. armigera) used. This study showcases the methodology to quantify the chitinase and analysis of variation in virulence of B. bassiana (B2 and B10) against M. vitrata and H. armigera.


Subject(s)
Beauveria/pathogenicity , Biological Variation, Population , Chitinases/analysis , Lepidoptera/microbiology , Virulence Factors/analysis , Animals , Beauveria/enzymology , Beauveria/genetics , Beauveria/growth & development , Cajanus/parasitology , Chitinases/genetics , Culture Media/chemistry , Real-Time Polymerase Chain Reaction , Virulence , Virulence Factors/genetics
11.
Toxins (Basel) ; 9(8)2017 07 26.
Article in English | MEDLINE | ID: mdl-28933727

ABSTRACT

We report the first integrated proteomic and transcriptomic investigation of a crustacean venom. Remipede crustaceans are the venomous sister group of hexapods, and the venom glands of the remipede Xibalbanus tulumensis express a considerably more complex cocktail of proteins and peptides than previously thought. We identified 32 venom protein families, including 13 novel peptide families that we name xibalbins, four of which lack similarities to any known structural class. Our proteomic data confirm the presence in the venom of 19 of the 32 families. The most highly expressed venom components are serine peptidases, chitinase and six of the xibalbins. The xibalbins represent Inhibitory Cystine Knot peptides (ICK), a double ICK peptide, peptides with a putative Cystine-stabilized α-helix/ß-sheet motif, a peptide similar to hairpin-like ß-sheet forming antimicrobial peptides, two peptides related to different hormone families, and four peptides with unique structural motifs. Remipede venom components represent the full range of evolutionary recruitment frequencies, from families that have been recruited into many animal venoms (serine peptidases, ICKs), to those having a very narrow taxonomic range (double ICKs), to those unique for remipedes. We discuss the most highly expressed venom components to shed light on their possible functional significance in the predatory and defensive use of remipede venom, and to provide testable ideas for any future bioactivity studies.


Subject(s)
Crustacea/chemistry , Peptides/isolation & purification , Peptides/pharmacology , Venoms/chemistry , Animals , Chitinases/analysis , Cystine/chemistry , Peptides/chemistry , Proteomics , Serine Endopeptidases/analysis , Transcriptome/genetics
12.
Braz J Microbiol ; 46(4): 1053-64, 2015.
Article in English | MEDLINE | ID: mdl-26691463

ABSTRACT

This study investigated lytic enzyme activities in three indigenous Trichoderma strains namely, Trichoderma asperellum, Trichoderma harzianum and Trichoderma sp. Native Trichoderma strains and a virulent strain of Rhizoctonia solani isolated from infected bean plants were also included in the study. Enzyme activities were determined by measuring sugar reduction by dinitrosalicylic acid (DNS) method using suitable substrates. The antagonists were cultured in minimal salt medium with the following modifications: medium A (1 g of glucose), medium B (0.5 g of glucose + 0.5 g of deactivated R. solani mycelia), medium C (1.0 g of deactivated respective antagonist mycelium) and medium D (1 g of deactivated R. solani mycelia). T asperellum showed presence of higher amounts of chitinases, ß-1, 3-glucanases and xylanases in extracellular protein extracts from medium D as compared to medium A. While, the higher activities of glucosidases and endoglucanses were shown in medium D extracts by T. harzianum. ß-glucosidase activities were lower compared with other enzymes; however, activities of the extracts of medium D were significantly different. T. asperellum exhibited maximum inhibition (97.7%). On the other hand, Trichoderma sp. did not show any effect on mycelia growth of R. solani on crude extract.


Subject(s)
Fungal Proteins/metabolism , Trichoderma/enzymology , Chitinases/analysis , Chitinases/metabolism , Endo-1,4-beta Xylanases/analysis , Endo-1,4-beta Xylanases/metabolism , Fungal Proteins/analysis , Glycoside Hydrolases/analysis , Glycoside Hydrolases/metabolism , Mycelium/chemistry , Mycelium/enzymology , Mycelium/growth & development , Pakistan , Trichoderma/chemistry , Trichoderma/growth & development
13.
Braz. j. microbiol ; 46(4): 1053-1064, Oct.-Dec. 2015. tab, graf
Article in English | LILACS | ID: lil-769641

ABSTRACT

Abstract This study investigated lytic enzyme activities in three indigenous Trichoderma strains namely, Trichoderma asperellum, Trichoderma harzianum and Trichoderma sp. Native Trichoderma strains and a virulent strain of Rhizoctonia solani isolated from infected bean plants were also included in the study. Enzyme activities were determined by measuring sugar reduction by dinitrosalicylic acid (DNS) method using suitable substrates. The antagonists were cultured in minimal salt medium with the following modifications: medium A (1 g of glucose), medium B (0.5 g of glucose + 0.5 g of deactivated R. solani mycelia), medium C (1.0 g of deactivated respective antagonist mycelium) and medium D (1 g of deactivated R. solani mycelia). T asperellum showed presence of higher amounts of chitinases, β-1, 3-glucanases and xylanases in extracellular protein extracts from medium D as compared to medium A. While, the higher activities of glucosidases and endoglucanses were shown in medium D extracts by T. harzianum. β-glucosidase activities were lower compared with other enzymes; however, activities of the extracts of medium D were significantly different. T. asperellum exhibited maximum inhibition (97.7%). On the other hand, Trichoderma sp. did not show any effect on mycelia growth of R. solani on crude extract.


Subject(s)
Chitinases/analysis , Chitinases/chemistry , Chitinases/enzymology , Chitinases/growth & development , Chitinases/metabolism , /analysis , /chemistry , /enzymology , /growth & development , /metabolism , Fungal Proteins/analysis , Fungal Proteins/chemistry , Fungal Proteins/enzymology , Fungal Proteins/growth & development , Fungal Proteins/metabolism , Glycoside Hydrolases/analysis , Glycoside Hydrolases/chemistry , Glycoside Hydrolases/enzymology , Glycoside Hydrolases/growth & development , Glycoside Hydrolases/metabolism , Mycelium/analysis , Mycelium/chemistry , Mycelium/enzymology , Mycelium/growth & development , Mycelium/metabolism , Pakistan/analysis , Pakistan/chemistry , Pakistan/enzymology , Pakistan/growth & development , Pakistan/metabolism , Trichoderma/analysis , Trichoderma/chemistry , Trichoderma/enzymology , Trichoderma/growth & development , Trichoderma/metabolism
14.
J Insect Sci ; 152015.
Article in English | MEDLINE | ID: mdl-25972507

ABSTRACT

A protein, designated as Sgl, showing a muramidase lytic activity to the cell wall of the Gram-positive bacterium Micrococcus lysodeikticus was isolated for the first time from plasma of Escherichia coli-immunized fifth instar Schistocerca gregaria. The isolated Sgl was detected as a single protein band, on both native- and SDS-PAGE, has a molecular weight of ∼15.7 kDa and an isoelectric point (pI) of ca 9.3 and its antiserum has specifically recognized its isolated form. Fifty-nine percentage of Sgl lytic activity was recovered in the isolated fractions and yielded ca 126-fold increase in specific activity than that of the crude. The partial N-terminal amino acid sequence of the Sgl has 55 and 40% maximum identity with Bombyx mori and Gallus gallus c-type lysozymes, respectively. The antibacterial activity against the Gram-positive and the Gram-negative bacteria were comparatively stronger than that of the hen egg white lysozyme (HEWL). The detected Sgl poration to the inner membrane that reach a maximum ability after 3 h was suggested to operate as a nonenzymatic mechanism for Gram-negative bacterial cell lysis, as tested in a permease-deficient E. coli, ML-35 strain. Sgl showed a maximal muramidase activity at pH 6.2, 30-50°C, and 0.05 M Ca(2+) or Mg(2+); and has a Km of 0.5 µg/ml and a Vmax of 0.518 with M. lysodeikticus as a substrate. The Sgl displayed a chitinase activity against chitin with a Km of 0.93 mg/ml and a Vmax of 1.63.


Subject(s)
Anti-Infective Agents/isolation & purification , Grasshoppers/enzymology , Muramidase/metabolism , Amino Acid Sequence , Animals , Anti-Infective Agents/chemistry , Chitinases/analysis , Microbial Sensitivity Tests , Molecular Sequence Data , Monophenol Monooxygenase/metabolism , Muramidase/chemistry , Muramidase/isolation & purification
15.
J Struct Biol ; 190(2): 115-21, 2015 May.
Article in English | MEDLINE | ID: mdl-25727185

ABSTRACT

A new chitinase-like agglutinin, RobpsCRA, related to family GH18 chitinases, has previously been identified in black locust (Robinia pseudoacacia) bark. The crystal structure of RobpsCRA at 1.85Å resolution reveals unusual molecular determinants responsible for the lack of its ancestral chitinase activity. Unlike other chitinase-like proteins, which lack chitinase catalytic residues, RobpsCRA has conserved its catalytic machinery. However, concerted rearrangements of loop regions coupled to non-conservative substitutions of aromatic residues central to the chitin-binding groove explain the lack of hydrolytic activity against chitin and the switch toward recognition of high-mannose type N-glycans. Identification of close homologs in flowering plants with conservation of sequence motifs associated to the structural adaptations seen in RobpsCRA defines an emerging class of agglutinins, as emphasized by a phylogenetic analysis, that are likely to share a similar carbohydrate binding specificity for high-mannose type N-glycans. This study illustrates the recent evolution and molecular adaptation of a versatile TIM-barrel scaffold within the ancestral GH18 family.


Subject(s)
Agglutinins/analysis , Evolution, Molecular , Models, Molecular , Plant Bark/chemistry , Robinia/chemistry , Agglutinins/chemistry , Catalysis , Chitinases/analysis , Chromatography, Gel , Crystallization , Hydrolysis , Likelihood Functions , Models, Genetic , Phylogeny , Polysaccharides/metabolism , Protein Conformation
16.
Eur J Oral Sci ; 123(3): 149-57, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25809904

ABSTRACT

A cross-sectional observational study was conducted to evaluate interindividual biochemical variation in unstimulated whole saliva in a population of 268 systemically healthy young students, 18-30 yr of age, with no apparent caries lesions or periodontal disease. Salivary flow rate, protein content, pH, buffering capacity, mucins MUC5B and MUC7, albumin, secretory IgA, cystatin S, lactoferrin, chitinase, amylase, lysozyme, and proteases were measured using ELISAs and enzymatic activity assays. Significant differences were found between male and female subjects. Salivary pH, buffering capacity, protein content, MUC5B, secretory IgA, and chitinase activity were all lower in female subjects compared with male subjects, whereas MUC7 and lysozyme activity were higher in female subjects. There was no significant difference between sexes in salivary flow rate, albumin, cystatin S, amylase, and protease activity. Principal component analysis (PCA) and spectral clustering (SC) were used to assess intervariable relationships within the data set and to identify subgroups. Spectral clustering identified two clusters of participants, which were subsequently described. This study provides a comprehensive overview of the distribution and inter-relations of a set of important salivary biochemical variables in a systemically healthy young adult population, free of apparent caries lesions and periodontal disease. It highlights significant gender differences in salivary biochemistry.


Subject(s)
Saliva/chemistry , Adolescent , Adult , Albumins/analysis , Amylases/analysis , Buffers , Chitinases/analysis , Cluster Analysis , Cross-Sectional Studies , Female , Humans , Hydrogen-Ion Concentration , Immunoglobulin A, Secretory/analysis , Lactoferrin/analysis , Male , Mucin-5B/analysis , Mucins/analysis , Muramidase/analysis , Peptide Hydrolases/analysis , Principal Component Analysis , Saliva/metabolism , Saliva/physiology , Salivary Cystatins/analysis , Salivary Proteins and Peptides/analysis , Secretory Rate/physiology , Sex Factors , Young Adult
17.
J Agric Food Chem ; 63(8): 2314-20, 2015 Mar 04.
Article in English | MEDLINE | ID: mdl-25665100

ABSTRACT

The wine aroma loss as a consequence of treatments with bentonite is due to the occurrence of multiple interaction mechanisms. In addition to a direct effect of bentonite, the removal of aroma compounds bound to protein components adsorbed by the clay has been hypothesized but never demonstrated. We studied the effect of bentonite addition on total wine aroma compounds (extracted from Moscato wine) in a model solution in the absence and presence of total and purified (thaumatin-like proteins and chitinase) wine proteins. The results showed that in general bentonite alone has a low effect on the loss of terpenes but removed ethyl esters and fatty acids. The presence of wine proteins in the solution treated with bentonite tended to increase the loss of esters with the longest carbon chains (from ethyl octanoate to ethyl decanoate), and this was significant when the purified proteins were used. The results here reported suggest that hydrophobicity can be one of the driving forces involved in the interaction of aromas with both bentonite and proteins.


Subject(s)
Bentonite/analysis , Plant Proteins/analysis , Volatile Organic Compounds/analysis , Wine/analysis , Chitinases/analysis , Odorants/analysis
18.
Cryo Letters ; 35(5): 438-48, 2014.
Article in English | MEDLINE | ID: mdl-25397959

ABSTRACT

BACKGROUND: Chitinase is responsible for chitin metabolism in a wide range of organisms. However, current knowledge on insect chitinase and their possible functions in relation to low temperature stress is very limited. OBJECTIVE: Six chitinase genes from cold treated desert beetle Microdera punctipennis obtained by RNA-seq technology were characterized, and their expression patterns in different tissues and in response to cold were investigated. METHODS: Multiple sequence alignment was carried out using ClustalW1.81 and Phylogenetic trees were generated by MEGA5. The expression patterns were studied by quantitative real-time PCR. RESULTS: These genes were belong to three different chitinase groups. Almost all of them were highly expressed in midgut, and some are expressed in fat body or hindgut. Subzero-4 degree C had stronger effect than 4 degree C in inducing chitinase expression. CONCLUSION: The tissue specific and cold inducible expressions suggest that the chitinases may have diverse functions and play roles in insect cold adaptation.


Subject(s)
Chitinases/genetics , Cold-Shock Response , Coleoptera/enzymology , Coleoptera/physiology , Gene Expression Regulation , Amino Acid Sequence , Animals , Base Sequence , Chitinases/analysis , Cold Temperature , Coleoptera/chemistry , Coleoptera/genetics , Molecular Sequence Data , Phylogeny , Sequence Alignment
19.
Allergol. immunopatol ; 42(4): 293-301, jul.-ago. 2014. ilus
Article in English | IBECS | ID: ibc-125199

ABSTRACT

INTRODUCTION: Most of pathogenesis related (PR) proteins possess complicated structures; hence their active recombinant forms are usually produced in eukaryotic systems. In this study, we employed an insect cell line to express a recombinant form of a previously identified grape PR3 allergen categorised as class IV chitinase. METHODS: Grape chitinase cDNA was amplified by RT-PCR and inserted into pFastBacHTA using restriction enzymes. The recombinant pFastBacHTA was applied for the transformation of Escherichia coli DH10Bac cells. The purified recombinant bacmid was used for transfection of Sf9 cells. Finally, the IgE-immunoreactivity of purified recombinant protein was evaluated using grape allergic patient's sera. Moreover, polyclonal anti-6His-tag and monoclonal anti-chitinase antibodies were used for further assessment of recombinant protein. RESULTS: SDS-PAGE analysis of the transfected Sf9 cells showed expression of a monomeric 25 kDa and a dimeric 50 kDa recombinant protein. Western blotting revealed considerable IgE reactivity of the recombinant protein with grape allergic patients' sera. Furthermore, confirmatory assays showed specific reactivity of the recombinant protein with anti-His tag and anti-chitinase antibodies. CONCLUSION: This study showed that, in contrast to E. coli, insect cells are suitable hosts for the production of a soluble and IgE-reactive recombinant form of grape class IV chitinase. This recombinant allergen could be used for component resolved diagnosis of grape allergy or other immunodiagnostic purposes


No disponible


Subject(s)
Vitis , Spodoptera , Chitinases/analysis , Allergens/analysis , Baculoviridae/isolation & purification , Food Hypersensitivity/diagnosis , Eukaryotic Cells , DNA, Complementary/analysis , Transfection
20.
ISME J ; 8(10): 2148-50, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25036924

ABSTRACT

Functionally important proteins at the interface of cell and soil are of potentially low abundance when compared with commonly recovered intracellular proteins. A novel approach was developed and used to extract the metaexoproteome, the subset of proteins found outside the cell, in the context of a soil enriched with the nitrogen-containing recalcitrant polymer chitin. The majority of proteins recovered was of bacterial origin and localized to the outer membrane or extracellular milieu. A wide variety of transporter proteins were identified, particularly those associated with amino-acid and phosphate uptake. The metaexoproteome extract retained chitinolytic activity and we were successful in detecting Nocardiopsis-like chitinases that correlated with the glycoside hydrolase family 18 (GH18) chi gene data and metataxonomic analysis. Nocardiopsis-like chitinases appeared to be solely responsible for chitinolytic activity in soil. This is the first study to detect and sequence bacterial exoenzymes with proven activity in the soil enzyme pool.


Subject(s)
Bacteria/enzymology , Chitinases/analysis , Soil Microbiology , Bacteria/classification , Chitin/metabolism , Chitinases/metabolism , Proteomics
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