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1.
FASEB J ; 33(7): 8280-8293, 2019 07.
Article in English | MEDLINE | ID: mdl-31021670

ABSTRACT

The HIV-1 transactivation protein (Tat) binds the HIV mRNA transactivation responsive element (TAR), regulating transcription and reactivation from latency. Drugs against Tat are unfortunately not clinically available. We reported that didehydro-cortistatin A (dCA) inhibits HIV-1 Tat activity. In human CD4+ T cells isolated from aviremic individuals and in the humanized mouse model of latency, combining dCA with antiretroviral therapy accelerates HIV-1 suppression and delays viral rebound upon treatment interruption. This drug class is amenable to block-and-lock functional cure approaches, aimed at a durable state of latency. Simian immunodeficiency virus (SIV) infection of rhesus macaques (RhMs) is the best-characterized model for AIDS research. Here, we demonstrate, using in vitro and cell-based assays, that dCA directly binds to SIV Tat's basic domain. dCA specifically inhibits SIV Tat binding to TAR, but not a Tat-Rev fusion protein, which activates transcription when Rev binds to its cognate RNA binding site replacing the apical region of TAR. Tat-TAR inhibition results in loss of RNA polymerase II recruitment to the SIV promoter. Importantly, dCA potently inhibits SIV reactivation from latently infected Hut78 cells and from primary CD4+ T cells explanted from SIVmac239-infected RhMs. In sum, dCA's remarkable breadth of activity encourages SIV-infected RhM use for dCA preclinical evaluation.-Mediouni, S., Kessing, C. F., Jablonski, J. A., Thenin-Houssier, S., Clementz, M., Kovach, M. D., Mousseau, G., de Vera, I.M.S., Li, C., Kojetin, D. J., Evans, D. T., Valente, S. T. The Tat inhibitor didehydro-cortistatin A suppresses SIV replication and reactivation.


Subject(s)
CD4-Positive T-Lymphocytes/virology , Gene Products, tat/antagonists & inhibitors , Simian Acquired Immunodeficiency Syndrome/metabolism , Simian Immunodeficiency Virus/physiology , Virus Activation/drug effects , Virus Replication/drug effects , Animals , CD4-Positive T-Lymphocytes/metabolism , CD4-Positive T-Lymphocytes/pathology , Gene Products, tat/metabolism , HEK293 Cells , HeLa Cells , Heterocyclic Compounds, 4 or More Rings , Humans , Isoquinolines , Macaca mulatta , Promoter Regions, Genetic , Simian Acquired Immunodeficiency Syndrome/pathology , Terminal Repeat Sequences
2.
Bioorg Med Chem Lett ; 22(18): 5857-62, 2012 Sep 15.
Article in English | MEDLINE | ID: mdl-22917520

ABSTRACT

Series of benzyl-phenoxybenzyl amino-phenyl acid derivatives (8a-q) are reported as non-steroidal GR antagonist. Compound 8g showed excellent h-GR binding and potent antagonistic activity (in vitro). The lead compound 8g exhibited significant oral antidiabetic and antihyperlipidemic effects (in vivo), along with liver selectivity. These preliminary results confirm discovery of potent and liver selective passive GR antagonist for the treatment of T2DM.


Subject(s)
Benzyl Compounds/pharmacology , Diabetes Mellitus, Type 2/drug therapy , Drug Discovery , Hypoglycemic Agents/pharmacology , Liver/chemistry , Receptors, Glucocorticoid/antagonists & inhibitors , Administration, Oral , Animals , Benzyl Compounds/administration & dosage , Benzyl Compounds/chemistry , Blood Glucose/drug effects , Dose-Response Relationship, Drug , Focal Adhesion Protein-Tyrosine Kinases/antagonists & inhibitors , Gene Products, tat/antagonists & inhibitors , Humans , Hypoglycemic Agents/administration & dosage , Hypoglycemic Agents/chemistry , Liver/drug effects , Liver/metabolism , Male , Mice , Mice, Obese , Models, Molecular , Molecular Structure , Rats , Rats, Sprague-Dawley , Structure-Activity Relationship
3.
J Immunol ; 187(1): 391-400, 2011 Jul 01.
Article in English | MEDLINE | ID: mdl-21642540

ABSTRACT

The role of exocytosis in the human neutrophil respiratory burst was determined using a fusion protein (TAT-SNAP-23) containing the HIV transactivator of transcription (TAT) cell-penetrating sequence and the N-terminal SNARE domain of synaptosome-associated protein-23 (SNAP-23). This agent inhibited stimulated exocytosis of secretory vesicles and gelatinase and specific granules but not azurophil granules. GST pulldown showed that TAT-SNAP-23 bound to the combination of vesicle-associated membrane protein-2 and syntaxin-4 but not to either individually. TAT-SNAP-23 reduced phagocytosis-stimulated hydrogen peroxide production by 60% without affecting phagocytosis or generation of HOCl within phagosomes. TAT-SNAP-23 had no effect on fMLF-stimulated superoxide release but significantly inhibited priming of this response by TNF-α and platelet-activating factor. Pretreatment with TAT-SNAP-23 inhibited the increase in plasma membrane expression of gp91(phox) in TNF-α-primed neutrophils, whereas TNF-α activation of ERK1/2 and p38 MAPK was not affected. The data demonstrate that neutrophil granule exocytosis contributes to phagocytosis-induced respiratory burst activity and plays a critical role in priming of the respiratory burst by increasing expression of membrane components of the NADPH oxidase.


Subject(s)
Cytoplasmic Granules/immunology , Exocytosis/immunology , Neutrophil Activation/immunology , Respiratory Burst/immunology , Apoptosis/genetics , Apoptosis/immunology , Cytoplasmic Granules/genetics , Cytoplasmic Granules/metabolism , Exocytosis/genetics , Gene Products, tat/antagonists & inhibitors , Gene Products, tat/genetics , Gene Products, tat/metabolism , HIV-1/immunology , Humans , Neutrophil Activation/genetics , Phagocytosis/genetics , Phagocytosis/immunology , Platelet Activating Factor/physiology , Protein Structure, Tertiary/genetics , Qb-SNARE Proteins/antagonists & inhibitors , Qb-SNARE Proteins/genetics , Qb-SNARE Proteins/metabolism , Qc-SNARE Proteins/antagonists & inhibitors , Qc-SNARE Proteins/genetics , Qc-SNARE Proteins/metabolism , Recombinant Fusion Proteins/antagonists & inhibitors , Recombinant Fusion Proteins/metabolism , Respiratory Burst/genetics , SNARE Proteins/antagonists & inhibitors , SNARE Proteins/genetics , SNARE Proteins/metabolism , Signal Transduction/genetics , Signal Transduction/immunology , Tumor Necrosis Factor-alpha/physiology
4.
Neurochem Int ; 58(6): 656-64, 2011 May.
Article in English | MEDLINE | ID: mdl-21315782

ABSTRACT

Histone deacetylases (HDACs) play a pivotal role in epigenetic regulation of transcription and homeostasis of protein acetylation in histones and other proteins involved in chromatin remodeling. Histone hypoacetylation and transcriptional dysfunction have been shown to be associated with a variety of neurodegenerative diseases. More recently, neuron specific overexpression of HDAC2 has been shown to modulate synaptic plasticity and learning behavior in mice. However, the role of HDAC2 in development of HIV-associated neurocognitive disorders (HAND) is not reported. Herein we report that HIV-1 Tat protein upregulate HDAC2 expression in neuronal cells leading to transcriptional repression of genes involved in synaptic plasticity and neuronal function thereby contributing to the progression of HAND. Our results indicate upregulation of HDAC2 by Tat treatment in dose and time dependant manner by human neuroblastoma SK-N-MC cells and primary human neurons. Further, HDAC2 overexpression was associated with concomitant downregulation in CREB and CaMKIIa genes that are known to regulate neuronal activity. These observed effects were completely blocked by HDAC2 inhibition. These results for the first time suggest the possible role of HDAC2 in development of HAND. Therefore, use of HDAC2 specific inhibitor in combination with HAART may be of therapeutic value in treatment of neurocognitive disorders observed in HIV-1 infected individuals.


Subject(s)
AIDS Dementia Complex/enzymology , Gene Products, tat/physiology , HIV-1/metabolism , Histone Deacetylase 2/metabolism , Neurons/enzymology , Cell Line, Tumor , Flow Cytometry , Gene Products, tat/antagonists & inhibitors , Humans , Hydroxamic Acids/pharmacology , Polymerase Chain Reaction , Up-Regulation
5.
J Virol ; 82(19): 9492-504, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18667497

ABSTRACT

Human immunodeficiency virus type 1 (HIV-1) transcription is regulated by the viral Tat protein, which relieves a block to elongation by recruiting an elongation factor, P-TEFb, to the viral promoter. Here, we report the discovery of potent Tat inhibitors that utilize a localization signal to target a dominant negative protein to its site of action. Fusing the Tat activation domain to some splicing factors, particularly to the Arg-Ser (RS) domain of U2AF65, creates Tat inhibitors that localize to subnuclear speckles, sites where pre-mRNA processing factors are stored for assembly into transcription complexes. A U2AF65 fusion named T-RS interacts with the nonphosphorylated C-terminal domain of RNA polymerase II (RNAP II) via its RS domain and is loaded into RNAP II holoenzyme complexes. T-RS is recruited efficiently to the HIV-1 promoter in a TAR-independent manner before RNAP II hyperphosphorylation but not to cellular promoters. The "preloading" of T-RS into HIV-1 preinitiation complexes prevents the entry of active Tat molecules, leaving the complexes in an elongation-incompetent state and effectively suppressing HIV-1 replication. The ability to deliver inhibitors to transcription complexes through the use of targeting/localization signals may provide new avenues for designing viral and transcription inhibitors.


Subject(s)
Gene Expression Regulation, Viral , Gene Products, tat/antagonists & inhibitors , HIV-1/metabolism , Promoter Regions, Genetic , Transcription, Genetic , Virus Replication , Amino Acid Sequence , Gene Products, tat/metabolism , HeLa Cells , Humans , Kinetics , Models, Biological , Molecular Sequence Data , Protein Structure, Tertiary , Sequence Homology, Amino Acid , T-Lymphocytes/metabolism , T-Lymphocytes/virology
6.
Bioorg Med Chem ; 16(17): 8178-86, 2008 Sep 01.
Article in English | MEDLINE | ID: mdl-18693018

ABSTRACT

Twenty-four purine derivatives bearing aryl groups at N9 position were designed and synthesized as HIV-1 Tat-TAR interaction inhibitors. All the compounds showed high antiviral activities in inhibiting the formation of SIV-induced syncytium in CEM174 cells. Ten of them with low cytotoxicities were evaluated by Tat dependent HIV-1 LTR-driven CAT gene expression colorimetric enzyme assay in human 293T cells at a concentration of 30 microM, indicating effective inhibitory activities of blocking the Tat-TAR interaction. The aryl groups at N9 position affected the binding affinities between compounds and TAR RNA, showing some specificities of aryl groups to TAR RNA.


Subject(s)
Anti-HIV Agents/chemical synthesis , Gene Products, tat/antagonists & inhibitors , Purines/chemical synthesis , Purines/pharmacology , Anti-HIV Agents/chemistry , Anti-HIV Agents/pharmacology , Binding Sites , Cell Proliferation/drug effects , Cells, Cultured , Dose-Response Relationship, Drug , Drug Design , Gene Products, tat/genetics , Gene Products, tat/metabolism , HIV Long Terminal Repeat/drug effects , HIV-1/drug effects , Humans , Microbial Sensitivity Tests , Models, Molecular , Molecular Structure , Purines/chemistry , RNA/drug effects , RNA/genetics , Stereoisomerism , Structure-Activity Relationship
7.
Antivir Chem Chemother ; 18(4): 201-11, 2007.
Article in English | MEDLINE | ID: mdl-17907378

ABSTRACT

In search for effective human immunodeficiency virus type 1 (HIV-1) transcription inhibitors, we have evaluated more than 100,000 compounds for their inhibitory effects on HIV-1 long terminal repeat (LTR)-driven reporter gene expression, and identified a novel naphthalene derivative, JTK-101. This compound could suppress tumour necrosis factor (TNF)-alpha-induced HIV-1 production in latently infected OM-10.1 cells at nanomolar concentrations. JTK-101 could also potently inhibit constitutive HIV-1 production in MOTL-4/IIIB. However, the antiviral activity of JTK-101 was found to be much weaker in acutely infected cells and the chronically infected cells U937/IIIB cells than in OM-10.1 and MOLT-4/IIIB cells. JTK-101 selectively suppressed TNF-alpha-induced HIV-1 mRNA synthesis in OM-10.1 cells in a dose-dependent fashion. JTK-101 modestly inhibited TNF-alpha-induced HIV-1 LTR-driven reporter gene expression, but potently inhibited Tat-induced gene expression. Immunoblot analysis revealed that low-level expression of the Tat cofactors CDK9 and cyclin T1 might contribute to the diminished antiviral activity in U937/IIIB cells. Furthermore, JTK-101 could not inhibit HIV-1 replication in chronically infected monocytes/macrophages, in which CDK9 and cyclin T1 were undetectable. These results suggest that JTK-101 exerts its anti-HIV-1 activity through the inhibition of known or unknown Tat cofactors, presumably CDK9/cyclin T1.


Subject(s)
Anti-HIV Agents/chemistry , Anti-HIV Agents/pharmacology , Gene Products, tat/antagonists & inhibitors , HIV-1/drug effects , Naphthalenes/chemistry , Naphthalenes/pharmacology , Virus Replication/drug effects , Cell Line , Cyclin T , Cyclin-Dependent Kinase 9 , Cyclins , Fluoroquinolones/chemistry , Fluoroquinolones/pharmacology , Gene Expression Regulation, Viral , Gene Products, tat/metabolism , HIV-1/physiology , Humans , Molecular Structure , Transcriptional Activation , Tumor Necrosis Factor-alpha/pharmacology
8.
Retrovirology ; 4: 41, 2007 Jun 12.
Article in English | MEDLINE | ID: mdl-17565699

ABSTRACT

BACKGROUND: Examination of host cell-based inhibitors of HIV-1 transcription may be important for attenuating viral replication. We describe properties of a cellular double-stranded RNA binding protein with intrinsic affinity for HIV-1 TAR RNA that interferes with Tat/TAR interaction and inhibits viral gene expression. RESULTS: Utilizing TAR affinity fractionation, North-Western blotting, and mobility-shift assays, we show that the C-terminal variant of nuclear factor 90 (NF90ctv) with strong affinity for the TAR RNA, competes with Tat/TAR interaction in vitro. Analysis of the effect of NF90ctv-TAR RNA interaction in vivo showed significant inhibition of Tat-transactivation of HIV-1 LTR in cells expressing NF90ctv, as well as changes in histone H3 lysine-4 and lysine-9 methylation of HIV chromatin that are consistent with the epigenetic changes in transcriptionally repressed gene. CONCLUSION: Structural integrity of the TAR element is crucial in HIV-1 gene expression. Our results show that perturbation Tat/TAR RNA interaction by the dsRNA binding protein is sufficient to inhibit transcriptional activation of HIV-1.


Subject(s)
Gene Products, tat/antagonists & inhibitors , HIV-1/immunology , Nuclear Factor 90 Proteins/physiology , Transcriptional Activation , Binding Sites , Cell Fractionation , Cell Line , Electrophoretic Mobility Shift Assay , Gene Products, tat/metabolism , HIV Long Terminal Repeat , HeLa Cells , Histones/metabolism , Humans , Jurkat Cells , Methylation , Protein Binding , RNA, Double-Stranded/metabolism , RNA, Viral/metabolism , RNA-Binding Proteins/physiology , tat Gene Products, Human Immunodeficiency Virus
9.
Antimicrob Agents Chemother ; 51(7): 2337-45, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17452490

ABSTRACT

Human immunodeficiency virus (HIV) Tat and gp120 intriguingly share the feature of being basic peptides that, once released by HIV(+) cells, bind to polyanionic heparan sulfate proteoglycans (HSPGs) on target uninfected cells, contributing to the onset of AIDS-associated pathologies. To identify multitarget anti-HIV prodrugs, we investigated the gp120 and Tat antagonist potentials of a series of polyanionic synthetic sulfonic acid polymers (SSAPs). Surface plasmon resonance revealed that SSAPs inhibit with a competitive mechanism of action the binding of Tat and gp120 to surface-immobilized heparin, an experimental condition that resembles binding to cellular HSPGs. Accordingly, SSAPs inhibited HSPG-dependent cell internalization and the transactivating activity of Tat. Little is known about the binding of free gp120 to target cells. Here, we identified two classes of gp120 receptors expressed on endothelial cells, one of which was consistent with an HSPG-binding, low-affinity/high-capacity receptor that is inhibited by free heparin. SSAPs inhibited the binding of free gp120 to endothelial cells, as well as its capacity to induce apoptosis in the same cells. In all the assays, poly(4-styrenesulfonic acid) (PSS) proved to be the most potent antagonist of Tat and gp120. Accordingly, PSS bound both proteins with high affinity. In conclusion, SSAPs represent an interesting class of compounds that bind both gp120 and Tat and inhibit their HSPG-dependent cell surface binding and pathological effects. As these activities contribute to both AIDS progression and associated pathologies, SSAPs can be considered prototypic molecules for the development of multitarget drugs for the treatment of HIV infection and AIDS-associated pathologies.


Subject(s)
Gene Products, tat/antagonists & inhibitors , HIV Envelope Protein gp120/metabolism , HIV-1 , Heparin/metabolism , Caspase 3/metabolism , Cell Line, Transformed , Endothelial Cells/metabolism , Enzyme Activation/drug effects , Epithelial Cells/metabolism , Gene Products, tat/genetics , Glutathione Transferase/metabolism , Green Fluorescent Proteins/metabolism , HIV Long Terminal Repeat , HeLa Cells , Heparin/pharmacology , Humans , Kinetics , Molecular Mimicry , Molecular Structure , Polymers/chemical synthesis , Polymers/chemistry , Polymers/pharmacology , Prodrugs/metabolism , Protein Binding , Sulfonic Acids/chemical synthesis , Sulfonic Acids/chemistry , Sulfonic Acids/pharmacology , Surface Plasmon Resonance , tat Gene Products, Human Immunodeficiency Virus
10.
Oligonucleotides ; 17(1): 54-65, 2007.
Article in English | MEDLINE | ID: mdl-17461763

ABSTRACT

Replication of human immunodeficiency virus type 1 (HIV-1) is controlled by a variety of viral and host proteins. The viral protein Tat acts in concert with host cellular factors to stimulate transcriptional elongation from the viral long terminal repeat (LTR) through a specific interaction with a 59-residue stem-loop RNA known as the trans-activation responsive element (TAR). Inhibitors of Tat-TAR recognition are expected to block transcription and suppress HIV-1 replication. In previous studies, we showed that 2'-O-methyl (OMe) oligonucleotide mixmers containing locked nucleic acid (LNA) residues are powerful steric block inhibitors of Tat-dependent trans-activation in a HeLa cell reporter system. Here we compare OMe/LNA mixmer oligonucleotides with oligonucleotides containing tricyclo-DNAs and their mixmers with OMe residues in four different assays: (1) binding to the target TAR RNA, (2) Tat-dependent in vitro transcription from an HIV-1 DNA template directed by HeLa cell nuclear extract, (3) trans-activation inhibition in HeLa cells containing a stably integrated firefly luciferase reporter gene under HIV-1 LTR control, and (4) an anti-HIV beta-galactosidase reporter assay of viral infection. Although tricyclo-DNA oligonucleotides bound TAR RNA more weakly, they were as good as OMe/LNA oligonucleotides in suppressing in vitro transcription and trans-activation in HeLa cells when delivered by cationic lipid. No inhibition of in vitro transcription and trans-activation in HeLa cells was observed for tricyclo-DNA/OMe mixmers, even though their affinities to TAR RNA were strong and their cell distributions did not differ from oligonucleotides containing all or predominantly tricyclo-DNA residues. Tricyclo-DNA 16-mer showed sequence-specific inhibition of beta-galactosidase expression in an anti-HIV HeLa cell reporter assay.


Subject(s)
Anti-HIV Agents/pharmacology , Gene Expression Regulation, Viral/drug effects , Gene Products, tat/antagonists & inhibitors , HIV-1/drug effects , Oligodeoxyribonucleotides/pharmacology , Anti-HIV Agents/metabolism , Base Sequence , Gene Products, tat/genetics , Genes, Reporter , HIV Long Terminal Repeat/drug effects , HIV-1/genetics , HeLa Cells , Humans , Luciferases/analysis , Luciferases/genetics , Oligodeoxyribonucleotides/metabolism , Transcriptional Activation/drug effects , tat Gene Products, Human Immunodeficiency Virus
11.
Clin Pharmacol Ther ; 82(3): 294-9, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17361127

ABSTRACT

Human immunodeficiency virus (HIV) infection results in excessive apoptosis of infected and uninfected cells, mediated by host and viral factors present in plasma. As HIV protease inhibitors (PIs) have intrinsic antiapoptotic properties, we questioned whether HIV PIs could block HIV-induced CD4+ T-cell death independent of their effects on HIV replication. We demonstrate that HIV PIs block the death of CD4+ T cells induced by HIV glycoprotein 120 (gp120), Vpr, and Tat, as well as host signals Fas ligand, tumor necrosis factor, and tumor necrosis factor-related apoptosis-inducing ligand. Using gp120/CXCR4 as a model, we show that the HIV PIs specifically block mitochondrial apoptosis signaling. Furthermore, HIV PIs inhibit CD4+ T-cell death induced by viruses with high-level resistance to PIs (P<0.01) and apoptosis induced by serum of HIV patients with known resistance to HIV PIs (P=0.01). Together, these results show that HIV PIs block CD4+ T-cell death and have a beneficial effect on CD4+ T-cell survival despite PI resistance.


Subject(s)
CD4-Positive T-Lymphocytes/drug effects , HIV Protease Inhibitors/pharmacology , Cell Survival/drug effects , Cells, Cultured , Chemotaxis, Leukocyte/drug effects , Drug Resistance, Viral , Fas Ligand Protein/antagonists & inhibitors , Fas Ligand Protein/toxicity , Flow Cytometry , Gene Products, tat/antagonists & inhibitors , Gene Products, tat/toxicity , Gene Products, vpr/antagonists & inhibitors , Gene Products, vpr/toxicity , HIV Envelope Protein gp120/toxicity , HIV-1/drug effects , Humans , Nelfinavir/pharmacology , Receptors, CXCR4/antagonists & inhibitors , TNF-Related Apoptosis-Inducing Ligand/antagonists & inhibitors , TNF-Related Apoptosis-Inducing Ligand/toxicity , Virus Replication/drug effects , tat Gene Products, Human Immunodeficiency Virus , vpr Gene Products, Human Immunodeficiency Virus
12.
Int J Biol Sci ; 3(4): 225-36, 2007 Mar 01.
Article in English | MEDLINE | ID: mdl-17389929

ABSTRACT

Translocations between the human Mixed Lineage Leukemia (MLL) and AF4 Family (AFF) member genes, are implicated in leukemia. Mutations to AFFs can disrupt lymphopoesis, CNS development and spermatogenesis. However, despite the growing list of pathologies linked to AFF members, their evolutionary relationship and the structure/function of individual members, remain to be elucidated. Here, we first report that database mining and phylogenetic analysis with AFF proteins from multiple species, revealed two monophyletic sister clades, suggesting a common Bilateria ancestor. We then examined the structure/function of the most recently discovered AFF member, MCEF (also known as AF5q31 or AFF4). In silico, the human MCEF gene was found to have 21 exons, and code for a protein with seven nuclear localization sequences (NLS). In HeLa cells, an MCEF-EGFP fusion protein, localized exclusively to the nucleus. Consequently, we made twenty constructs, expressing MCEF deletion mutants fused to EGFP and/or DsRed fluorescent proteins. Three distinct protein sequences, encoded by three separate MCEF exons, were found to mediate nuclear localization, only two of which were predicted in silico. Importantly, we also found that ectopic expression of MCEF, repressed HIV-1 LTR-directed RNA Polymerase II transcription, at the level of Tat-transactivation. We suggest that portions of MCEF could be exploited for chimeric transcription factor repression (CTFR) of HIV-1.


Subject(s)
Gene Products, tat/antagonists & inhibitors , HIV-1/physiology , Nuclear Proteins/genetics , Repressor Proteins/physiology , Transcription Factors/physiology , Transcriptional Activation , Active Transport, Cell Nucleus , Amino Acid Sequence , Animals , Consensus Sequence , DNA, Complementary/genetics , Evolution, Molecular , Exons/genetics , Genes, Reporter , HIV Long Terminal Repeat , HeLa Cells , Humans , Invertebrates/genetics , Molecular Sequence Data , Nuclear Proteins/classification , Phylogeny , RNA Polymerase II/metabolism , RNA Splicing , Recombinant Fusion Proteins/metabolism , Repressor Proteins/chemistry , Repressor Proteins/genetics , Sequence Analysis, DNA , Sequence Homology , Species Specificity , Transcription Factors/chemistry , Transcription Factors/genetics , Transcriptional Elongation Factors , Vertebrates/genetics , tat Gene Products, Human Immunodeficiency Virus
13.
Biochemistry ; 46(3): 741-51, 2007 Jan 23.
Article in English | MEDLINE | ID: mdl-17223695

ABSTRACT

The Tat protein of immunodeficiency viruses is the main activator of viral gene expression. By binding specifically to its cognate site, the transactivator response element (TAR), Tat mediates a strong induction of the production of all viral transcripts. In seeking a new chemical solution to inhibiting viral protein-RNA interactions, we recently identified inhibitors of the viral Tat protein from the bovine immunodeficiency virus (BIV) using conformationally constrained beta-hairpin peptidomimetics. We identified a micromolar ligand, called BIV2, and the structure of its complex with BIV TAR was determined by NMR. In this work, we demonstrate that this chemistry can rapidly yield highly potent and selective ligands. On the basis of the structure, we synthesized and assayed libraries of mutant peptidomimetics. Remarkably, we were able in just a few rounds of design and synthesis to discover nanomolar inhibitors of the Tat-TAR interaction in BIV that selectively bind the BIV TAR RNA compared to RNA structures as closely related as the HIV-1 TAR or RRE elements. The molecular recognition principles developed in this study have been exploited in discovering related peptidomimetic inhibitors of the Tat-TAR interaction in HIV-1.


Subject(s)
Gene Products, tat/antagonists & inhibitors , Immunodeficiency Virus, Bovine/genetics , Molecular Mimicry , Peptides, Cyclic/pharmacology , RNA, Viral/chemistry , RNA-Binding Proteins/antagonists & inhibitors , Amino Acid Sequence , Animals , Cattle , Gene Products, tat/chemistry , Nuclear Magnetic Resonance, Biomolecular , Peptides, Cyclic/chemical synthesis , Protein Structure, Tertiary
14.
Bioorg Med Chem ; 15(1): 265-72, 2007 Jan 01.
Article in English | MEDLINE | ID: mdl-17055732

ABSTRACT

A series of novel substituted purines containing a side chain with a terminal amino or guanidyl group were designed and synthesized as HIV-1 Tat-TAR inhibitors. All the compounds could effectively block the TAR transactivation in human 293T cells with the CAT expression percentage ranging from 34.4% to 65.7% and showed high antiviral effects with low cytotoxicities in inhibiting the formation of SIV-induced syncytium in CEM174 cells. Molecular modeling studies by Auto-dock process suggest that the compounds bind to TAR RNA in two different modes.


Subject(s)
Anti-HIV Agents/chemical synthesis , Anti-HIV Agents/pharmacology , Gene Products, tat/antagonists & inhibitors , HIV Long Terminal Repeat/drug effects , Purines/chemical synthesis , Purines/pharmacology , Animals , Anti-HIV Agents/chemistry , Cell Line , Cell Proliferation/drug effects , Drug Design , Giant Cells/drug effects , Humans , Magnetic Resonance Spectroscopy/methods , Microbial Sensitivity Tests , Models, Molecular , Molecular Structure , Protein Structure, Tertiary , Purines/chemistry , Sensitivity and Specificity , Stereoisomerism , Structure-Activity Relationship , Transcriptional Activation/drug effects
15.
Chem Biol Drug Des ; 68(6): 314-8, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17177893

ABSTRACT

The special binding of Tat protein to TAR RNA leads to the transcription of HIV-1 virus. In this study, the influence of 2-5 generation of PAMAM dendrimers on the inhibition of Tat protein/TAR RNA binding has been investigated. The absorption of PAMAM dendrimers on TAR RNA, fixed on a gold substrate through an avidin-biotion connection, was carried out by using a quartz crystal microbalance. Experimental result shows a Langmuir-type isotherm could be used to describe this kind of binding, implying a specific and monolayer adsorption existed. The combination coefficient (K(D)(-1))s can be calculated according to Langmuir Equation, having the order of G3 > G4 > G5 >Tat > G2, indicating that PAMAM G3, G4 and G5 having the possibility to be the inhibitors of HIV-1 transcription. The migration time (T(migra)) of capillary electrophoretic technique has the same sequence as (K(D)(-1))s. These two parameters could be used as simple and quantitative criteria for the selection of possible drugs from numerous candidates for HIV therapy in vitro.


Subject(s)
Anti-HIV Agents/pharmacology , Gene Products, tat/antagonists & inhibitors , HIV Long Terminal Repeat/drug effects , HIV-1/drug effects , Polyamines/pharmacology , Amino Acid Sequence , Dendrimers , Electrophoresis, Capillary , HIV-1/genetics , Molecular Sequence Data , RNA, Viral/antagonists & inhibitors , Transcription, Genetic/drug effects , tat Gene Products, Human Immunodeficiency Virus
16.
Curr Drug Targets ; 7(12): 1595-606, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17168834

ABSTRACT

More than fifteen years following the description of Tat as a critical HIV gene expression regulatory protein, additional roles for Tat in HIV replication have been described, including reverse transcription. Tat achieves function through direct interaction with viral proteins, including reverse transcriptase, and numerous cellular proteins including cyclin T1, RNA polymerase II, protein kinase R (PKR), p300/CBP, and P/CAF. Despite our advanced knowledge of how Tat operates, this has not yet resulted in the discovery of effective agents capable of targeting various Tat functions. Nevertheless, Tat remains an attractive, virus-specific molecule and detailed understanding of specific protein interaction holds promise for future drug discovery.


Subject(s)
Anti-HIV Agents/pharmacology , Gene Products, tat/antagonists & inhibitors , Gene Products, tat/physiology , Exons , Gene Expression Regulation, Viral , Gene Products, tat/chemistry , Gene Products, tat/genetics , HIV Long Terminal Repeat , HIV-1/genetics , Humans , Phosphorylation , Positive Transcriptional Elongation Factor B/metabolism , Protein-Arginine N-Methyltransferases/metabolism , Repressor Proteins/metabolism , Transcription, Genetic , Transcriptional Activation , eIF-2 Kinase/metabolism , tat Gene Products, Human Immunodeficiency Virus
17.
Ann N Y Acad Sci ; 1082: 172-9, 2006 Oct.
Article in English | MEDLINE | ID: mdl-17145937

ABSTRACT

Combinatorial therapies for the treatment of HIV infection have changed the course of the AIDS epidemic in developed nations where the antiviral drug combinations are readily available. Despite this progress, there are many problems associated with chemotherapy for AIDS including toxicities and emergence of viral mutants resistant to the drugs. Our goal has been the development of a hematopoietic gene therapy treatment for HIV infection. Like chemotherapy, gene therapy for treatment of HIV infection should be used combinatorially. We have thus combined three different inhibitory genes for treatment of HIV infection into a single lentiviral vector backbone. The inhibitory agents engage RNAi via a short hairpin RNA targeting HIV tat/rev mRNAs, a nucleolar localizing decoy that binds and sequesters the HIV Tat protein, and a ribozyme that cleaves and downregulates the CCR5 chemokine receptor used by HIV for cellular entry. This triple combination has proven to be highly effective for inhibiting HIV replication in primary hematopoietic cells, and is currently on track for human clinical application.


Subject(s)
Genetic Therapy/methods , HIV Infections/therapy , Hematopoietic Stem Cells/metabolism , CCR5 Receptor Antagonists , Cells, Cultured , Drug Therapy, Combination , Gene Products, rev/antagonists & inhibitors , Gene Products, tat/antagonists & inhibitors , Genetic Vectors , HIV/drug effects , HIV Long Terminal Repeat/genetics , Humans , RNA, Catalytic/administration & dosage , RNA, Small Interfering/administration & dosage , Treatment Outcome , rev Gene Products, Human Immunodeficiency Virus , tat Gene Products, Human Immunodeficiency Virus
18.
J Immunol ; 177(2): 787-95, 2006 Jul 15.
Article in English | MEDLINE | ID: mdl-16818732

ABSTRACT

Peritoneal B-1a cells differ from splenic B-2 cells in the molecular mechanisms that control G(0)-S progression. In contrast to B-2 cells, cyclin D2 is up-regulated in a rapid and transient manner in phorbol ester (PMA)-stimulated B-1a cells, whereas cyclin D3 does not accumulate until late G(1) phase. This nonoverlapping expression of cyclins D2 and D3 suggests distinct functions for these proteins in B-1a cells. To investigate the contribution of cyclin D3 in the proliferation of B-1a cells, we transduced p16(INK4a) peptidyl mimetics (TAT-p16) into B-1a cells before cyclin D3 induction to specifically block cyclin D3-cyclin-dependent kinase 4/6 assembly. TAT-p16 inhibited DNA synthesis in B-1a cells stimulated by PMA, CD40L, or LPS as well as endogenous pRb phosphorylation by cyclin D-cyclin-dependent kinase 4/6. Unexpectedly, however, cyclin D3-deficient B-1a cells proliferated in a manner similar to wild-type B-1a cells following PMA or LPS stimulation. This was due, at least in part, to the compensatory sustained accumulation of cyclin D2 throughout G(0)-S progression. Taken together, experiments in which cyclin D3 was inhibited in real time demonstrate the key role this cyclin plays in normal B-1a cell mitogenesis, whereas experiments with cyclin D3-deficient B-1a cells show that cyclin D2 can compensate for cyclin D3 loss in mutant mice.


Subject(s)
B-Lymphocyte Subsets/cytology , Cell Proliferation , Cyclins/antagonists & inhibitors , Cyclins/deficiency , Cyclins/physiology , Growth Inhibitors , Amino Acid Sequence , Animals , B-Lymphocyte Subsets/immunology , B-Lymphocyte Subsets/metabolism , Cyclin D2 , Cyclin D3 , Cyclin-Dependent Kinase 4/antagonists & inhibitors , Cyclin-Dependent Kinase 4/genetics , Cyclin-Dependent Kinase 6/antagonists & inhibitors , Cyclin-Dependent Kinase 6/genetics , Cyclins/genetics , Gene Products, tat/antagonists & inhibitors , Gene Products, tat/genetics , Gene Targeting , Mice , Mice, Inbred BALB C , Mice, Knockout , Molecular Sequence Data , Peptides/antagonists & inhibitors , Peptides/genetics , Phosphorylation , Retinoblastoma Protein/metabolism , Transduction, Genetic
19.
J Virol ; 80(15): 7658-66, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16840344

ABSTRACT

Small interfering RNA (siRNA) could provide a new therapeutic approach to treating human immunodeficiency virus type 1 (HIV-1) infection. For long-term suppression of HIV-1, emergence of siRNA escape variants must be controlled. Here, we constructed lentiviral vectors encoding short-hairpin RNAs (shRNA) corresponding to conserved target sequences within the integrase (int) and the attachment site (att) genes, both of which are essential for HIV-1 integration. Compared to shRNA targeting of the HIV-1 transcription factor tat (shTat), shRNA against int (shIN) or the U3 region of att (shU3) showed a more potent inhibitory effect on HIV-1 replication in human CD4+ T cells. Infection with a high dose of HIV-1 resulted in the emergence of escape mutants during long-term culture. Of note, limited genetic variation was observed in the viruses resistant to shIN. A combination of shINs against wild-type and escape mutant sequences had a negative effect on their antiviral activities, indicating a potentially detrimental effect when administering multiple shRNA targeting the same region to combat HIV-1 variants. The combination of shIN and shU3 att exhibited the strongest anti-HIV-1 activity, as seen by complete abrogation of viral DNA synthesis and viral integration. In addition, a modified long-hairpin RNA spanning the 50 nucleotides in the shIN target region effectively suppressed wild-type and shIN-resistant mutant HIV-1. These results suggest that targeting of incoming viral RNA before proviral DNA formation occurs through the use of nonoverlapping multiple siRNAs is a potent approach to achieving sustained, efficient suppression of highly mutable viruses, such as HIV-1.


Subject(s)
Gene Targeting/methods , Genetic Vectors/genetics , HIV-1/physiology , RNA, Small Interfering/pharmacology , Virus Replication/physiology , Cell Line , Gene Products, tat/antagonists & inhibitors , Gene Products, tat/genetics , Gene Products, tat/metabolism , Genetic Therapy/methods , HIV Infections/therapy , HIV Integrase/chemistry , HIV Integrase/genetics , HIV Integrase/metabolism , Humans , Leukocytes, Mononuclear/virology , RNA, Small Interfering/genetics , RNA, Viral/genetics , tat Gene Products, Human Immunodeficiency Virus
20.
Virology ; 352(2): 253-67, 2006 Sep 01.
Article in English | MEDLINE | ID: mdl-16780912

ABSTRACT

Herpesvirus saimiri (HVS)-transformed human T cells become permissive for X4 and R5 strains of human immunodeficiency virus type 1 (HIV-1), evidence that HVS-encoded proteins associated with T cell transformation enhance HIV-1 replication. Analyzing the contribution of transformation-associated bicistronic HVS open reading frames (ORF) to HIV-1 replication revealed expression of the second ORF saimiri transformation-associated protein type C (StpC) conferred the permissive phenotype to T cells. In contrast, expression of the first HVS ORF tyrosine-kinase interacting protein (Tip) in the absence of StpC enhanced restriction of HIV-1 replication in T cell lines and peripheral blood mononuclear cells. Understanding the mechanism whereby Tip enhanced restriction of HIV-1 replication may uncover unique pathways that could be targeted therapeutically. Here we report that Tip restricts HIV-1 replication in a monocyte-derived cell line and restricts reactivation of replication of HIV-1 in a T cell line harboring provirus. In this report, we begin to unravel the molecular underpinnings of Tip-mediated restriction. Tip mediates both lymphocyte-cell-specific kinase (Lck)-dependent and -independent effects on HIV-1 replication. We also provide evidence that Tip-mediated restriction is in part due to inhibition of Tat transactivation of the HIV-1 long terminal repeat (LTR). Expression of Tip in T cells increased activation of Stat1 and Stat3, as well as activation of protein kinase RNA-dependent (PKR/p68) and interferon-gamma production. Taken together, these results provide evidence that Tip restricts HIV-1 replication and reactivation by inhibiting HIV-1 transcription while inducing an intercellular antiviral state. We propose that genetically engineered vectors driving Tip expression could provide a prototypic strategy for restricting HIV-1 replication and reactivation in diverse cell lineages.


Subject(s)
Gene Products, tat/antagonists & inhibitors , HIV-1/pathogenicity , Herpesvirus 2, Saimiriine/metabolism , Phosphoproteins/metabolism , Viral Proteins/metabolism , Cell Line , Cytopathogenic Effect, Viral , HIV Long Terminal Repeat , HIV-1/immunology , HIV-1/physiology , Herpesvirus 2, Saimiriine/genetics , Humans , Jurkat Cells , Lymphocyte Specific Protein Tyrosine Kinase p56(lck)/metabolism , Monocytes/immunology , Monocytes/metabolism , Monocytes/virology , Phosphoproteins/genetics , STAT1 Transcription Factor/metabolism , STAT3 Transcription Factor/metabolism , T-Lymphocytes/immunology , T-Lymphocytes/metabolism , T-Lymphocytes/virology , Transduction, Genetic , Transformation, Genetic , U937 Cells , Viral Proteins/genetics , Virus Replication , eIF-2 Kinase/metabolism , tat Gene Products, Human Immunodeficiency Virus
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