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1.
PLoS One ; 13(12): e0210087, 2018.
Article in English | MEDLINE | ID: mdl-30596787

ABSTRACT

The imbalance in homocysteine (Hcy) metabolism has been implicated in the pathogenesis of human diseases, including cardiovascular and neurodegenerative disorders. When attempting to identify gene expression profiles using quantitative real-time reverse transcription polymerase chain reaction (RT-qPCR), the selection of suitable reference genes is important. Here, the expression levels of 10 commonly used reference genes were assessed for normalization of RT-qPCR in Hcy-treated human umbilical vein endothelial cells (HUVECs) and control cells. The suitability of eight selected candidate genes was comparatively analyzed across the tested samples and separately ranked by four programs, geNorm, NormFinder, BestKeeper, and the ΔCt method. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was the most stable gene in the final ranking using the RankAggreg package. Surprisingly, the ß-actin (ACTB) levels decreased significantly in Hcy-treated HUVECs compared with control HUVECs (P<0.05), and further study indicated that Hcy suppressed the expression of ACTB by upregulating the miR-145-5p level in Hcy-treated HUVECs. Our data suggest that GAPDH can be used as a reliable reference gene, while ACTB cannot; normalization of gene expression in RT-qPCR experiments in Hcy-treated HUVECs. The data, which identifies a suitable reference gene in Hcy-treated HUVECs, will contribute to the design of an effective and accurate method for quantitation of gene expression.


Subject(s)
Actins/biosynthesis , Gene Expression Regulation/drug effects , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Homocysteine/pharmacology , Human Umbilical Vein Endothelial Cells/metabolism , Real-Time Polymerase Chain Reaction/standards , Actins/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Human Umbilical Vein Endothelial Cells/cytology , Humans , Real-Time Polymerase Chain Reaction/methods , Reference Standards
2.
Protein Expr Purif ; 137: 1-6, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28625912

ABSTRACT

The goal of the present work was expression of human glyceraldehyde-3-phosphate dehydrogenase (hGAPDH) without additional tag constructions in E. coli cells and elaboration of the procedure for purification of untagged hGAPDH from the extract of the producer cells. We present a simple method for purification of untagged hGAPDH including ammonium sulfate fractionation and gel filtration on a G-100 Sephadex column. The method allows isolation of 2 mg of pure hGAPDH from 600 ml of cell culture (7 g of the cell biomass). The specific activity of the freshly purified hGAPDH constitutes 117 ± 5 µmol NADH/min per mg protein (pH 9.0, 22 °C), which is close to the specific activity of rabbit muscle glyceraldehyde-3-phosphate dehydrogenase determined under the same conditions and several times exceeds the specific activity of his-tagged GAPDH preparations. The high enzymatic activity suggests that the recombinant enzyme retains its native structure. The described procedure may be useful for researchers who need a preparation of native hGAPDH without admixture of misfolded forms for their investigations.


Subject(s)
Escherichia coli/metabolism , Gene Expression , Glyceraldehyde-3-Phosphate Dehydrogenases , Escherichia coli/chemistry , Escherichia coli/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/chemistry , Glyceraldehyde-3-Phosphate Dehydrogenases/isolation & purification , Humans , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification
3.
PLoS One ; 12(6): e0176368, 2017.
Article in English | MEDLINE | ID: mdl-28591185

ABSTRACT

Real-time quantitative PCR (qPCR) is the most reliable and accurate technique for analyses of gene expression. Endogenous reference genes are being used to normalize qPCR data even though their expression may vary under different conditions and in different tissues. Nonetheless, verification of expression of reference genes in selected studied tissue is essential in order to accurately assess the level of expression of target genes of interest. Therefore, in this study, we attempted to examine six commonly used reference genes in order to identify the gene being expressed most constantly under the influence of testosterone in the kidneys and hypothalamus. The reference genes include glyceraldehyde-3-phosphate dehydrogenase (GAPDH), actin beta (ACTB), beta-2 microglobulin (B2m), hypoxanthine phosphoribosyltransferase 1 (HPRT), peptidylprolylisomerase A (Ppia) and hydroxymethylbilane synthase (Hmbs). The cycle threshold (Ct) value for each gene was determined and data obtained were analyzed using the software programs NormFinder, geNorm, BestKeeper, and rank aggregation. Results showed that Hmbs and Ppia genes were the most stably expressed in the hypothalamus. Meanwhile, in kidneys, Hmbs and GAPDH appeared to be the most constant genes. In conclusion, variations in expression levels of reference genes occur in kidneys and hypothalamus under similar conditions; thus, it is important to verify reference gene levels in these tissues prior to commencing any studies.


Subject(s)
Gene Expression Profiling/methods , Hypothalamus/metabolism , Kidney/metabolism , Real-Time Polymerase Chain Reaction/methods , Actins/biosynthesis , Animals , Gene Expression Regulation/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Hydroxymethylbilane Synthase/biosynthesis , Hypothalamus/drug effects , Hypoxanthine Phosphoribosyltransferase/biosynthesis , Kidney/drug effects , Peptidylprolyl Isomerase/biosynthesis , Rats , Reference Standards , Testosterone/administration & dosage , beta 2-Microglobulin/biosynthesis
4.
Asian J Androl ; 19(4): 409-413, 2017.
Article in English | MEDLINE | ID: mdl-27080476

ABSTRACT

It has been suggested that the energy required for sperm motility is produced by oxidative phosphorylation while glycolysis seems to be an important source for ATP transmission along the flagellum. Some studies have investigated the chemical and kinetic properties of the enzyme glyceraldehyde 3-phosphate dehydrogenase to identify any changes in the regulation of glycolysis and sperm motility. In contrast, there are few studies analyzing the genetic basis of hypokinesis. For this reason, we investigated the glyceraldehyde 3-phosphate dehydrogenase gene in human sperm to evaluate whether asthenozoospermia was correlated with any changes in its expression. Semen examination and glyceraldehyde 3-phosphate dehydrogenase gene expression studies were carried out on 116 semen samples divided into two groups - Group A consisted of 58 normokinetic samples and Group B of 58 hypokinetic samples. Total RNA was extracted from spermatozoa, and real-time PCR quantification of mRNA was carried out using specific primers and probes. The expression profiles for the Groups A and B were very similar. The mean delta Ct was as follows - Group A, 5.79 ± 1.04; Group B, 5.47 ± 1.27. Our study shows that in human sperm, there is no difference in glyceraldehyde 3-phosphate dehydrogenase gene expression between samples with impaired motility and samples with normal kinetics. We believe that this study could help in the understanding of the molecular mechanisms of sperm kinetics, suggesting that hypomotility may be due to a possible posttranscriptional impairment of the control mechanism, such as mRNA splicing, or to posttranslational changes.


Subject(s)
Asthenozoospermia/enzymology , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Spermatozoa/enzymology , Adult , Aging , Gene Expression Regulation/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Humans , In Vitro Techniques , Kinetics , Male , Middle Aged , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Sperm Motility/genetics
5.
Protein Expr Purif ; 128: 36-41, 2016 12.
Article in English | MEDLINE | ID: mdl-27501924

ABSTRACT

Chondroitinases (ChSases) are a family of polysaccharide lyases that can depolymerize high molecular weight chondroitin sulfate (CS) and dermatan sulfate (DS). In this study, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is stably expressed in different cells like normal cells and cancer cells and the expression is relatively insensitive to experimental conditions, was expressed as a fusion protein with ChSase ABC I. Results showed that the expression level and enzyme activity of GAPDH-ChSase ABC I were about 2.2 and 3.0 times higher than those of ChSase ABC I. By optimization of fermentation conditions, higher productivity of ChSase ABC I was achieved as 880 ± 61 IU/g wet cell weight compared with the reported ones. The optimal temperature and pH of GAPDH-ChSase ABC I were 40 °C and 7.5, respectively. GAPDH-ChSase ABC I had a kcat/Km of 131 ± 4.1 L/µmol s and the catalytic efficiency was decreased as compared to ChSase ABC I. The relative activity of GAPDH-ChSase ABC I remained 89% after being incubated at 30 °C for 180 min and the thermostability of ChSase ABC I was enhanced by GAPDH when it was incubated at 30, 35, 40 and 45 °C.


Subject(s)
Bacterial Proteins , Chondroitin ABC Lyase , Escherichia coli/metabolism , Gene Expression , Glyceraldehyde-3-Phosphate Dehydrogenases , Proteus vulgaris/genetics , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Catalysis , Chondroitin ABC Lyase/biosynthesis , Chondroitin ABC Lyase/chemistry , Chondroitin ABC Lyase/genetics , Chondroitin ABC Lyase/isolation & purification , Enzyme Stability , Escherichia coli/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/chemistry , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/isolation & purification , Hot Temperature , Proteus vulgaris/enzymology , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification
6.
Genet Mol Res ; 15(2)2016 Jun 03.
Article in English | MEDLINE | ID: mdl-27323116

ABSTRACT

RNA extraction from the nucleus pulposus of intervertebral discs has been extensively used in orthopedic studies. We compared two methods for extracting RNA from the nucleus pulposus: liquid nitrogen grinding and enzyme digestion. The RNA was detected by agarose gel electrophoresis, and the purity was evaluated by absorbance ratio using a spectrophotometer. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) expression was assayed by reverse transcription-polymerase chain reaction (RT-PCR). Thirty human lumbar intervertebral discs were used in this study. The liquid nitrogen-grinding method was used for RNA extraction from 15 samples, and the mean RNA concentration was 491.04 ± 44.16 ng/mL. The enzyme digestion method was used on 15 samples, and the mean RNA concentration was 898.42 ± 38.64 ng/mL. The statistical analysis revealed that there was a significant difference in concentration between the different methods. Apparent 28S, 18S, and 5S bands were detectable in RNA extracted using the enzyme digestion method, whereas no 28S or 18S bands were detected in RNA extracted using the liquid nitrogen-grinding method. The GAPDH band was visible, and no non-specific band was detected in the RT-PCR assay by the enzyme digestion method. Therefore, the enzyme digestion method is an efficient and easy method for RNA extraction from the nucleus pulposus of intervertebral discs for further intervertebral disc degeneration-related studies.


Subject(s)
Intervertebral Disc Degeneration/genetics , Intervertebral Disc/metabolism , Nucleus Pulposus/metabolism , RNA/isolation & purification , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Humans , RNA/genetics
7.
Protein Expr Purif ; 117: 17-25, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26341815

ABSTRACT

Plasmodium spp. solely rely on glycolysis for their energy needs during asexual multiplication in human RBCs, making the enzymes of this pathway potential drug targets. We have cloned, over-expressed and purified Plasmodium falciparum glyceraldehyde-3-phosphate dehydrogenase (PfGapdh) for its kinetic and structural characterization. ∼ 30-40 mg pure recombinant enzyme with a specific activity of 12.6 units/mg could be obtained from a liter of Escherichia coli culture. This enzyme is a homotetramer with an optimal pH ∼ 9. Kinetic measurements gave KmNAD=0.28 ± 0.3 mM and KmG3P=0.25 ± 0.03 mM. Polyclonal antibodies raised in mice showed high specificity as was evident from their non-reactivity to rabbit muscle Gapdh. Western blot of Plasmodium yoelii cell extract showed three bands at MW ∼ 27, ∼ 37 and ∼ 51 kDa. Presence of PyGapdh in all the three bands was confirmed by LC-ESI-MS. Interestingly, the ∼ 51 kDa form was present only in the soluble fraction of the extract. Subcellular distribution of Gapdh in P. yoelii was examined using differential detergent fractionation method. Each fraction was analyzed on a two-dimensional gel and visualized by Western blotting. All four subcellular fractions (i.e., cytosol, nucleus, cytoskeleton and cell membranes) examined had Gapdh associated with them. Each fraction had multiple molecular species associated with them. Such species could arise only by multiple post-translational modifications. Structural heterogeneity observed among molecular species of PyGapdh and their diverse subcellular distribution, supports the view that Gapdh is likely to have multiple non-glycolytic functions in the parasite and could be an effective target for anti-malarial chemotherapeutics.


Subject(s)
Glyceraldehyde-3-Phosphate Dehydrogenases , Plasmodium falciparum/enzymology , Plasmodium yoelii/enzymology , Protozoan Proteins , Animals , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/chemistry , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/isolation & purification , Humans , Mice , Plasmodium falciparum/genetics , Plasmodium yoelii/genetics , Protozoan Proteins/biosynthesis , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , Protozoan Proteins/isolation & purification , Rabbits , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Species Specificity
8.
Clin Cancer Res ; 21(16): 3695-704, 2015 Aug 15.
Article in English | MEDLINE | ID: mdl-25944804

ABSTRACT

PURPOSE: The clinical management of colorectal cancer patients has significantly improved because of the identification of novel therapeutic targets such as EGFR and VEGF. Because rapid tumor proliferation is associated with poor patient prognosis, here we characterized the transcriptional signature of rapidly proliferating colorectal cancer cells in an attempt to identify novel candidate therapeutic targets. EXPERIMENTAL DESIGN: The doubling time of 52 colorectal cancer cell lines was determined and genome-wide expression profiling of a subset of these lines was assessed by microarray analysis. We then investigated the potential of genes highly expressed in cancer cells with faster growth as new therapeutic targets. RESULTS: Faster proliferation rates were associated with microsatellite instability and poorly differentiated histology. The expression of 1,290 genes was significantly correlated with the growth rates of colorectal cancer cells. These included genes involved in cell cycle, RNA processing/splicing, and protein transport. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and protoporphyrinogen oxidase (PPOX) were shown to have higher expression in faster growing cell lines and primary tumors. Pharmacologic or siRNA-based inhibition of GAPDH or PPOX reduced the growth of colon cancer cells in vitro. Moreover, using a mouse xenograft model, we show that treatment with the specific PPOX inhibitor acifluorfen significantly reduced the growth of three of the seven (42.8%) colon cancer lines investigated. CONCLUSIONS: We have characterized at the transcriptomic level the differences between colorectal cancer cells that vary in their growth rates, and identified novel candidate chemotherapeutic targets for the treatment of colorectal cancer.


Subject(s)
Colorectal Neoplasms/genetics , Flavoproteins/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Mitochondrial Proteins/biosynthesis , Neoplasm Proteins/biosynthesis , Protoporphyrinogen Oxidase/biosynthesis , Animals , Cell Cycle/genetics , Cell Proliferation/genetics , Colorectal Neoplasms/drug therapy , Colorectal Neoplasms/pathology , Female , Flavoproteins/antagonists & inhibitors , Flavoproteins/genetics , Gene Expression Regulation, Neoplastic , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , HCT116 Cells , Humans , Male , Mice , Mitochondrial Proteins/antagonists & inhibitors , Mitochondrial Proteins/genetics , Molecular Targeted Therapy , Neoplasm Proteins/genetics , Nitrobenzoates/administration & dosage , Protein Transport/genetics , Protoporphyrinogen Oxidase/antagonists & inhibitors , Protoporphyrinogen Oxidase/genetics , RNA Splicing/genetics , RNA, Small Interfering , Signal Transduction , Xenograft Model Antitumor Assays
9.
Asian Pac J Cancer Prev ; 15(14): 5815-8, 2014.
Article in English | MEDLINE | ID: mdl-25081706

ABSTRACT

For an exact comparison of mRNA transcription in different samples or tissues with real time quantitative reverse transcription-polymerase chain reaction (qRT-PCR), it is crucial to select a suitable internal reference gene. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and beta-actin (ACTB) have been frequently considered as house-keeping genes to normalize for changes in specific gene expression. However, it has been reported that these genes are unsuitable references in some cases, because their transcription is significantly variable under particular experimental conditions and among tissues. The present study was aimed to investigate which reference genes are most suitable for the study of gastric cancer tissues using qRT-PCR. 50 pairs of gastric cancer and corresponding peritumoral tissues were obtained from patients with gastric cancer. Absolute qRT-PCR was employed to detect the expression of GAPDH, ACTB, RPII and 18sRNA in the gastric cancer samples. Comparing gastric cancer with corresponding peritumoral tissues, GAPDH, ACTB and RPII were obviously up-regulated 6.49, 5.0 and 3.68 fold, respectively. Yet 18sRNA had no obvious expression change in gastric cancer tissues and the corresponding peritumoral tissues. The expression of GAPDH, ß-actin, RPII and 18sRNA showed no obvious changes in normal gastric epithelial cells compared with gastric cancer cell lines. The carcinoembryonic antigen (CEA), a widely used clinical tumor marker, was used as a validation gene. Only when 18sRNA was used as the normalizing gene was CEA obviously elevated in gastric cancer tissues compared with peritumoral tissues. Our data show that 18sRNA is stably expressed in gastric cancer samples and corresponding peritumoral tissues. These observations confirm that there is no universal reference gene and underline the importance of specific optimization of potential reference genes for any experimental condition.


Subject(s)
Biomarkers, Tumor/genetics , Real-Time Polymerase Chain Reaction/methods , Reverse Transcriptase Polymerase Chain Reaction/methods , Stomach Neoplasms/genetics , Actins/biosynthesis , Actins/genetics , Biomarkers, Tumor/biosynthesis , Carcinoembryonic Antigen/biosynthesis , Carcinoembryonic Antigen/genetics , Eye Proteins/biosynthesis , Eye Proteins/genetics , GTP-Binding Proteins , Gene Expression , Gene Expression Profiling , Gene Expression Regulation, Neoplastic , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Humans , Intracellular Signaling Peptides and Proteins/biosynthesis , Intracellular Signaling Peptides and Proteins/genetics , Membrane Proteins/biosynthesis , Membrane Proteins/genetics , RNA, Messenger/genetics , RNA, Ribosomal, 18S/biosynthesis , RNA, Ribosomal, 18S/genetics , Reference Values
10.
Int J Pharm ; 469(1): 206-13, 2014 Jul 20.
Article in English | MEDLINE | ID: mdl-24768403

ABSTRACT

Small interfering RNAs (siRNAs) delivery remains a bottleneck for RNA interference (RNAi) - based therapies in the clinic. In the present study, a fusion protein with two cell-penetrating peptides (CPP), Hph1-Hph1, and a double-stranded RNA binding domain (dsRBD), was constructed for the siRNA delivery: dsRBD was designed to bind siRNA, and CPP would subsequently transport the dsRBD/siRNA complex into cells. We assessed the efficiency of the fusion protein, Hph1-Hph1-dsRBD, as a siRNA carrier. Calcium-condensed effects were assessed on GAPDH and green fluorescent protein (GFP) genes by western blot, real time polymerase chain reaction (RT-PCR), and flow cytometry analysis in vitro. Evaluations were also made in an in vivo heart transplantation model. The results demonstrated that the fusion protein, Hph1-Hph1-dsRBD, is highly efficient at delivering siRNA in vitro, and exhibits efficiency on GAPDH and GFP genes similar to or greater than lipofectamine. Interestingly, the calcium-condensed effects dramatically enhanced cellular uptake of the protein-siRNA complex. In vivo, Hph1-Hph1-dsRBD transferred and distributed ^ targeted siRNA throughout the whole mouse heart graft. Together, these results indicate that Hph1-Hph1-dsRBD has potential as an siRNA carrier for applications in the clinic or in biomedical research.


Subject(s)
Cell-Penetrating Peptides/metabolism , Gene Transfer Techniques , Genetic Therapy/methods , Heart Transplantation , Peptide Fragments/metabolism , RNA Interference , RNA, Small Interfering/metabolism , RNA-Binding Proteins/metabolism , Animals , Biological Transport , Calcium/metabolism , Cell-Penetrating Peptides/chemistry , Gene Expression Regulation , Genes, Reporter , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Green Fluorescent Proteins/biosynthesis , Green Fluorescent Proteins/genetics , HeLa Cells , Humans , Male , Mice, Inbred C57BL , Peptide Fragments/chemistry , Protein Interaction Domains and Motifs , RNA, Small Interfering/chemistry , RNA, Small Interfering/genetics , RNA-Binding Proteins/chemistry , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism
11.
Ann Anat ; 195(6): 527-32, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24182837

ABSTRACT

The insulin-like growth factor (IGF) system plays an important role in tissue development and presumably also governs pathophysiology of the periodontal ligament (PDL). It has been the aim of this study to elucidate the specific expression pattern of IGF2 and IGFBP6 in PDL cells and to determine whether PDL cells feature autoregulatory mechanisms upon exposure to these IGF components. Human PDL cells (n=6) were exposed to IGF2 (100 ng/ml), IGFBP6 (450 ng/ml, 675 ng/ml, 1125 ng/ml) or a combination of 100 ng/ml IGF2 and 675 ng/ml IGFBP6 for 1, 3 or 5d. qRT-PCR was run for IGF2, IGFBP6, Ki67, ALP, osteocalcin. Immunocytochemical quantification was performed for IGF2 and IGFBP6. Results showed a time-dependent increase in IGF2 and IGFBP6 gene expression, as opposed to a general decrease at the protein level. At the transcriptional and protein level, challenge with IGF2 and IGFBP6 dampened the expression of both molecules at all time points investigated. Only in the case of IGF2 did combined treatment with IGF2 and IGFBP6 contrarily increased protein expression in both nuclear and cytoplasmatic structures compared to the vehicle treated controls. Analyses of PDL cell proliferation and differentiation revealed Ki67 downregulation by IGF2 and IGFBP6 alone or in combination. Beyond this, the osteogenic differentiation potential of PDL cells was suppressed as ALP and osteocalcin expression was reduced. Our results indicate that IGF2 and IGFBP6 appear to govern various regulatory feedback mechanisms in PDL cells. Thus, the functional properties of these molecules in oral structures are presumably self-controlled under impact of different biological processes such as expression levels of these IGF components, cell proliferation and differentiation.


Subject(s)
Insulin-Like Growth Factor Binding Protein 6/metabolism , Insulin-Like Growth Factor II/metabolism , Periodontal Ligament/metabolism , Adolescent , Alkaline Phosphatase/metabolism , Cells, Cultured , Child , Down-Regulation/genetics , Down-Regulation/physiology , Gene Expression/genetics , Gene Expression/physiology , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Homeostasis , Humans , Image Processing, Computer-Assisted , Immunohistochemistry , Insulin-Like Growth Factor Binding Protein 6/pharmacology , Insulin-Like Growth Factor II/pharmacology , Ki-67 Antigen/biosynthesis , Ki-67 Antigen/genetics , Osteocalcin/biosynthesis , Osteocalcin/genetics , Periodontal Ligament/cytology , Periodontium/growth & development , Periodontium/physiology , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Tooth Root/cytology , Tooth Root/physiology
13.
Appl Environ Microbiol ; 79(8): 2657-69, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23396346

ABSTRACT

This study aimed at investigating the extracellular and cell wall-associated proteins (exoproteome) of Lactobacillus plantarum DC400 when cultivated on modified chemically defined medium (CDM) supplemented with the chemically synthesized pheromone plantaricin A (PlnA) or cocultured with L. plantarum DPPMA20 or Lactobacillus sanfranciscensis DPPMA174. Compared to monoculture, two-dimensional gel electrophoresis (2-DE) analysis showed that the exoproteome of L. plantarum DC400 was affected by PlnA and cocultivation with strains DPPMA20 and, especially, DPPMA174. The highest similarity of the 2-DE maps was found between DC400 cells cultivated in monoculture and in coculture with strain DPPMA20. Almost all extracellular proteins (22 spots) and cell wall-associated proteins (40 spots) which showed decreased or increased levels of synthesis during growth in CDM supplemented with PlnA and/or in coculture with strain DPPMA20 or DPPMA174 were identified. On the basis of the sequences in the Kyoto Encyclopedia of Genes and Genomes database, changes to the exoproteome concerned proteins involved in quorum sensing (QS), the transport system, stress response, carbohydrate metabolism and glycolysis, oxidation/reduction processes, the proteolytic system, amino acid metabolism, cell wall and catabolic processes, and cell shape, growth, and division. Cultivation with PlnA and cocultivation with strains DPPMA20 and, especially, DPMMA174 markedly increased the capacity of L. plantarum DC400 to form biofilms, to adhere to human Caco-2 cells, and to prevent the adhesion of potential intestinal pathogens. These phenotypic traits were in part related to oversynthesized moonlighting proteins (e.g., DnaK and GroEL, pyruvate kinase, enolase, and glyceraldehyde-3-phosphate dehydrogenase) in response to QS mechanisms and interaction with L. plantarum DPPMA20 and, especially, L. sanfranciscensis DPPMA174.


Subject(s)
Bacterial Adhesion/drug effects , Bacterial Proteins/metabolism , Bacteriocins/pharmacology , Lactobacillus plantarum/physiology , Bacterial Proteins/biosynthesis , Biofilms/growth & development , Caco-2 Cells , Cell Line , Chaperonin 60/biosynthesis , Chaperonin 60/metabolism , Coculture Techniques , Gene Expression Regulation, Bacterial , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/metabolism , Humans , Lactobacillus plantarum/drug effects , Lactobacillus plantarum/genetics , Lactobacillus plantarum/metabolism , Membrane Proteins/metabolism , Phosphopyruvate Hydratase/biosynthesis , Phosphopyruvate Hydratase/metabolism , Proteome/drug effects , Pyruvate Kinase/biosynthesis , Pyruvate Kinase/metabolism , Quorum Sensing
14.
J Invest Dermatol ; 133(1): 144-53, 2013 Jan.
Article in English | MEDLINE | ID: mdl-22832495

ABSTRACT

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) has an important role not only in glycolysis but also in nonmetabolic processes, including transcription activation and apoptosis. We report the isolation of a human GAPDH (hGAPDH) (2-32) fragment peptide from human placental tissue exhibiting antimicrobial activity. The peptide was internalized by cells of the pathogenic yeast Candida albicans and initiated a rapid apoptotic mechanism, leading to killing of the fungus. Killing was dose-dependent, with 10 µg ml (3.1 µM) and 100 µg ml hGAPDH (2-32) depolarizing 45% and 90% of the fungal cells in a population, respectively. Experimental C. albicans infection induced epithelial hGAPDH (2-32) expression. Addition of the peptide significantly reduced the tissue damage as compared with untreated experimental infection. Secreted aspartic proteinase (Sap) activity of C. albicans was inhibited by the fragment at higher concentrations, with a median effective dose of 160 mg l(-1) (50 µM) for Sap1p and 200 mg l(-1) (63 µM) for Sap2p, whereas Sap3 was not inhibited at all. Interestingly, hGAPDH (2-32) induced significant epithelial IL-8 and GM-CSF secretion and stimulated Toll-like receptor 4 expression at low concentrations independently of the presence of C. albicans, without any toxic mucosal effects. In the future, the combination of different antifungal strategies, e.g., a conventional fungicidal with immunomodulatory effects and the inhibition of fungal virulence factors, might be a promising treatment option.


Subject(s)
Antifungal Agents/pharmacology , Epithelium/drug effects , Glyceraldehyde-3-Phosphate Dehydrogenases/chemistry , Immunomodulation/drug effects , Peptide Fragments/pharmacology , Antifungal Agents/isolation & purification , Apoptosis/drug effects , Aspartic Acid Proteases/antagonists & inhibitors , Aspartic Acid Proteases/metabolism , Candida albicans/drug effects , Candida albicans/metabolism , Candidiasis/drug therapy , Candidiasis/immunology , Cell Line , Epithelium/immunology , Epithelium/microbiology , Female , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Granulocyte-Macrophage Colony-Stimulating Factor/biosynthesis , Granulocyte-Macrophage Colony-Stimulating Factor/immunology , Humans , Interleukin-8/biosynthesis , Interleukin-8/immunology , Mouth Mucosa/drug effects , Mouth Mucosa/immunology , Mouth Mucosa/microbiology , Peptide Fragments/isolation & purification , Placenta/enzymology , Pregnancy , Toll-Like Receptor 4/biosynthesis , Toll-Like Receptor 4/immunology
15.
Prep Biochem Biotechnol ; 43(1): 79-94, 2013.
Article in English | MEDLINE | ID: mdl-23215656

ABSTRACT

In the design of recombinant bacterial vector vaccine, heterogeneous antigen is displayed on the outer membrane of the vector strain to evoke polyvalent immunological protection. Thus, the expression of heterogeneous antigen in cells and its display on the outer membrane are of great concern for vaccine preparation. In our previous work, a multivalent bacterial vector vaccine MVAV6203A-1 was constructed by displaying the protective antigen GAPDH from Aeromonas hydrophila on the surface of an attenuated Vibrio anguillarum MVAV6203. In this work, a new fermentation medium was designed by a four-step method to improve the cell growth and antigen display of V. anguillarum MVAV6203A-1. First, suitable carbon and nitrogen sources were selected by a component swapping method. Second, the initial concentrations of carbon and nitrogen sources were determined by orthogonal design. Then three main factors to significantly affect cell growth and antigen expression were screened by a Plackett-Burman design. Finally, the three main factors were meticulously optimized by response surface methodology. Based on this medium, a fed-batch fermentation process was established in a 5-L bioreactor, and the dry cell weight, the antigen expression in cells, and its display on outer membrane reached 5.98 g/L, 2.82 mg/g DCW, and 0.119 mg/g DCW, respectively.


Subject(s)
Aeromonas hydrophila/immunology , Antigens, Bacterial/biosynthesis , Bacterial Vaccines/biosynthesis , Fish Diseases/prevention & control , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Gram-Negative Bacterial Infections/veterinary , Vibrio/immunology , Aeromonas hydrophila/chemistry , Algorithms , Animals , Antigens, Bacterial/genetics , Antigens, Bacterial/immunology , Bacterial Vaccines/immunology , Bioreactors , Culture Media , Fermentation , Fish Diseases/immunology , Fish Diseases/microbiology , Fishes , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/immunology , Gram-Negative Bacterial Infections/immunology , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/prevention & control , Principal Component Analysis , Vaccines, Synthetic , Vibrio/genetics , Vibrio/growth & development
16.
Invest Ophthalmol Vis Sci ; 53(11): 7276-85, 2012 Oct 19.
Article in English | MEDLINE | ID: mdl-23010639

ABSTRACT

PURPOSE: To study the effect of age on the morphologic and biochemical alterations induced by in vivo exposure of ultraviolet radiation (UV). METHODS: Young and old C57BL/6 mice were exposed to broadband UVB+UVA and euthanized after 2 days. Another batch of UV-exposed young mice was monitored for changes after 1, 2, 4, and 8 days. Age-matched nonexposed mice served as controls. Lens changes were documented in vivo by slit-lamp biomicroscopy and dark field microscopy photographs ex vivo. Lens homogenates were analyzed for glutathione (GSH) level, and the activities of thioredoxin (Trx), thioltransferase (TTase), and glyceraldehyde-3-phosphate dehydrogenase (G3PD). Glutathionylated lens proteins (PSSGs) were detected by immunoblotting using GSH antibody. Western blot analysis was also done for the expression levels of TTase and Trx. RESULTS: Both age groups developed epithelial and superficial anterior subcapsular cataract at 2 days postexposure. The lens GSH level and G3PD activity were decreased, and PSSGs were elevated in both age groups, but more prominent in the older mice. TTase and Trx activity and protein expression were elevated only in the young mice. Interestingly, lens TTase and Trx in the young mice showed a transient increase, peaking at 2 days after UV exposure and returning to baseline at day 8, corroborated by lens transparency. CONCLUSIONS: The lenses of old mice were more susceptible to UV radiation-induced cataract. The upregulated TTase and Trx likely provided oxidation damage repair in the young mice.


Subject(s)
Aging/metabolism , Cataract/metabolism , Crystallins/biosynthesis , Oxidative Stress , Up-Regulation , Animals , Blotting, Western , Cataract/etiology , Cataract/pathology , Disease Models, Animal , Disease Progression , Female , Follow-Up Studies , Glutaredoxins/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Lens, Crystalline/metabolism , Lens, Crystalline/radiation effects , Male , Mice , Mice, Inbred C57BL , Thioredoxins/biosynthesis , Ultraviolet Rays/adverse effects
17.
J Immunol ; 189(6): 2697-701, 2012 Sep 15.
Article in English | MEDLINE | ID: mdl-22896640

ABSTRACT

Dendritic cells (DC) in the gut promote immune tolerance by expressing retinal dehydrogenase (RALDH), an enzyme that promotes retinoic acid, which aids differentiation of Foxp3+ inducible regulatory T cells (iTreg) in the intestinal mucosa. How RALDH expression is regulated is unclear. We found that 4-1BB (CD137), a member of the TNFR family, together with CD103, marked mesenteric lymph node DC with the highest level of RALDH activity, and ligation of 4-1BB maintained RALDH expression in these gut DC. Moreover, 4-1BB signals synergized with those through TLR2 or GM-CSFR to promote RALDH activity in undifferentiated DC. Correspondingly, 4-1BB-deficient mice were impaired in their ability to generate iTreg in the GALT when exposed to oral Ag, and 4-1BB-deficient mesenteric lymph node DC displayed weak RALDH activity and were poor at promoting iTreg development. Thus, our data demonstrate a novel activity of 4-1BB in controlling RALDH expression and the regulatory activity of DC.


Subject(s)
Dendritic Cells/immunology , Dendritic Cells/metabolism , Gene Expression Regulation, Enzymologic , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Retinal Pigment Epithelium/immunology , Retinal Pigment Epithelium/metabolism , Tumor Necrosis Factor Receptor Superfamily, Member 9/physiology , Animals , Cells, Cultured , Dendritic Cells/enzymology , Gene Expression Regulation, Enzymologic/genetics , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Intestinal Mucosa/enzymology , Intestinal Mucosa/immunology , Intestinal Mucosa/metabolism , Lymph Nodes/cytology , Lymph Nodes/immunology , Lymph Nodes/metabolism , Mesentery/cytology , Mesentery/immunology , Mesentery/metabolism , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, Transgenic , Retinal Pigment Epithelium/enzymology , Spleen/cytology , Spleen/immunology , Spleen/metabolism , Tumor Necrosis Factor Receptor Superfamily, Member 9/deficiency , Tumor Necrosis Factor Receptor Superfamily, Member 9/genetics
18.
PLoS One ; 7(7): e40276, 2012.
Article in English | MEDLINE | ID: mdl-22792260

ABSTRACT

In Drosophila melanogaster few methods exist to perform rapid cell-type or tissue-specific expression profiling. A translating ribosome affinity purification (TRAP) method to profile actively translated mRNAs has been developed for use in a number of multicellular organisms although it has only been implemented to examine limited sets of cell- or tissue-types in these organisms. We have adapted the TRAP method for use in the versatile GAL4/UAS system of Drosophila allowing profiling of almost any tissue/cell-type with a single genetic cross. We created transgenic strains expressing a GFP-tagged ribosomal protein, RpL10A, under the control of the UAS promoter to perform cell-type specific translatome profiling. The GFP::RpL10A fusion protein incorporates efficiently into ribosomes and polysomes. Polysome affinity purification strongly enriches mRNAs from expected genes in the targeted tissues with sufficient sensitivity to analyze expression in small cell populations. This method can be used to determine the unique translatome profiles in different cell-types under varied physiological, pharmacological and pathological conditions.


Subject(s)
Drosophila Proteins/biosynthesis , Drosophila melanogaster/genetics , Gene Expression Profiling/methods , RNA, Messenger/genetics , Animals , Brain/cytology , Brain/metabolism , Drosophila Proteins/genetics , Drosophila melanogaster/metabolism , Female , Genes, Reporter , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Green Fluorescent Proteins/biosynthesis , Green Fluorescent Proteins/genetics , Male , Neurons/metabolism , Organ Specificity , Polyribosomes/metabolism , Promoter Regions, Genetic , Protein Biosynthesis , Proteome/biosynthesis , Proteome/genetics , RNA, Messenger/isolation & purification , RNA, Messenger/metabolism , RNA, Ribosomal, 18S/biosynthesis , RNA, Ribosomal, 18S/genetics , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/genetics , Ribosomal Proteins/biosynthesis , Ribosomal Proteins/genetics , Transcriptome
19.
Auton Neurosci ; 168(1-2): 58-65, 2012 May 21.
Article in English | MEDLINE | ID: mdl-22377379

ABSTRACT

OBJECTIVES: The purpose of the present study was to investigate whether long term low level autonomic activation can form electrophysiological substrate for atrial fibrillation (AF). METHODS AND RESULTS: In 16 anesthetized open-chest dogs, electrodes on the anterior right ganglionated plexuses (GP) and superior left GP allowed 6-h low-level GP stimulation (LL-GPS) inducing a 10% decrease in sinus rate. Similar low-level stimulation (without myocardial capture) was delivered to the myocardium remote from the GP for 6h in another 16 dogs as control group. LL-GPS: a) induced shortening of the atrial effective refractory period and increase of the window of vulnerability for AF; b) significantly increased acetylcholine-regulated potassium current (I(KACh)) at left superior pulmonary vein (LSPV) while reduced the density of L-type calcium current (I(CaL)) at LSPV and both atria, the protein expression of the channel subunit showed a consistent alteration, however both without significant changes in mRNA level. CONCLUSIONS: Six-hour LL-GPS induced significant changes in atrial electrophysiology and facilitated the initiation of AF, indicating that long-term low level autonomic activation would form electrophysiological substrate for AF. The underlying mechanism may be associated with a post-transcriptional regulation of increased I(KACh) and decreased I(CaL).


Subject(s)
Atrial Fibrillation/physiopathology , Ganglia, Autonomic/physiology , Acetylcholine/physiology , Animals , Blotting, Western , Calcium Channels, L-Type/physiology , Dogs , Electric Stimulation , Electrophysiologic Techniques, Cardiac , Electrophysiological Phenomena , Evoked Potentials/physiology , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Heart/physiology , Heart Atria/physiopathology , In Vitro Techniques , Muscarinic Antagonists/pharmacology , Patch-Clamp Techniques , Potassium Channels/physiology , RNA/biosynthesis , RNA/genetics , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Receptors, Muscarinic/physiology , Refractory Period, Electrophysiological
20.
J Cell Physiol ; 227(10): 3518-27, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22252379

ABSTRACT

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is known to be a "housekeeping" protein; studies in non-cardiomyocytic cells have shown that GAPDH plays pro-apoptotic role by translocating from cytoplasm to the nucleus or to the mitochondria. However, the cardiovascular roles of GAPDH are unknown. We observed that phenylephrine (PE) (100 µM) protected against serum and glucose starvation -induced apoptosis in neonatal rat cardiac myocytes as assessed by terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) and mitochondrial membrane potential depolarization. GAPDH glycolysis activity was positively correlated with the antiapoptotic action of PE. GAPDH activity inhibition blunted PE-induced protection of the mitochondrial membrane potential and cardiomyocytes. PE-induced Bcl-2 protein increase, Bax mitochondrial decrease and inhibition of cytochrome C release and Caspase 3 activation, as well as ROS production were blunted by GAPDH activity inhibition. Moreover, GAPDH overexpression provided protection against starvation-induced cardiomyocyte apoptosis in vitro and ischemia-induced cardiac infarction in vivo. Inhibition of Akt prevented PE-induced GAPDH activity increase and cardiomyocytes protection. In conclusion, the present study provides the first direct evidence of an antiapoptotic role of GAPDH in PE-induced cardiomyocytes protection; GAPDH activity elevation mainly affects the mitochondria-induced apoptosis.


Subject(s)
Apoptosis/drug effects , Glyceraldehyde-3-Phosphate Dehydrogenases/metabolism , Myocytes, Cardiac/drug effects , Phenylephrine/pharmacology , Starvation/pathology , Animals , Apoptosis/genetics , Caspase 3/metabolism , Cells, Cultured , Cytochromes c/metabolism , DNA Nucleotidylexotransferase/metabolism , Glyceraldehyde-3-Phosphate Dehydrogenases/biosynthesis , Glyceraldehyde-3-Phosphate Dehydrogenases/genetics , Glycolysis/drug effects , Glycolysis/genetics , In Situ Nick-End Labeling/methods , Membrane Potential, Mitochondrial/drug effects , Membrane Potential, Mitochondrial/genetics , Mitochondria/drug effects , Mitochondria/metabolism , Myocytes, Cardiac/enzymology , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/pathology , Phosphorylation/drug effects , Phosphorylation/genetics , Proto-Oncogene Proteins c-akt/metabolism , Proto-Oncogene Proteins c-bcl-2/metabolism , Rats , Reactive Oxygen Species/metabolism , Starvation/enzymology , bcl-2-Associated X Protein/metabolism
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