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1.
Anal Chem ; 96(33): 13371-13378, 2024 Aug 20.
Article in English | MEDLINE | ID: mdl-39116285

ABSTRACT

Biomimetic enzymes have emerged as ideal alternatives to natural enzymes, and there is considerable interest in designing biomimetic enzymes with enhanced catalytic performance to address the low activity of the current biomimetic enzymes. In this study, we proposed a meaningful strategy for constructing an efficient peroxidase-mimicking catalyst, called HhG-MOF, by anchoring histidine (H) and dual hemin-G-quadruplex DNAzyme (double hemin covalently linked to 3' and 5' terminals of G-quadruplex DNA, short as hG) to a mesoporous metal-organic framework (MOF). This design aims to mimic the microenvironment of natural peroxidase. Remarkably, taking a terbium MOF as a typical model, the initial rate of the resulting catalyst was found to be 21.1 and 4.3 times higher than that of Hh-MOF and hG-MOF, respectively. The exceptional catalytic properties of HhG-MOF can be attributed to its strong affinity for substrates. Based on the inhibitory effect of thiocholine (TCh) produced by the reaction between acetylcholinesterase (AChE) and acetylthiocholine, a facile, cost-effective, and sensitive colorimetric method was designed based on HhG-MOF for the measurement of AChE, a marker of several neurological diseases, and its inhibitor. This allowed a linear response in the 0.002 to 1 U L-1 range, with a detection limit of 0.001 U L-1. Furthermore, the prepared sensor demonstrated great selectivity and performed well in real blood samples, suggesting that it holds promise for applications in the clinical field.


Subject(s)
Biosensing Techniques , DNA, Catalytic , G-Quadruplexes , Hemin , Histidine , Metal-Organic Frameworks , Hemin/chemistry , Metal-Organic Frameworks/chemistry , Biosensing Techniques/methods , Histidine/chemistry , DNA, Catalytic/chemistry , DNA, Catalytic/metabolism , Colorimetry , Humans , Catalysis , Biomimetic Materials/chemistry
2.
Anal Methods ; 16(34): 5785-5792, 2024 Aug 29.
Article in English | MEDLINE | ID: mdl-39140250

ABSTRACT

In this work, we proposed a sensitive and selective colorimetric assay for single nucleotide mutation (SNM) detection combining rolling circle amplification (RCA) and G-quadruplex/hemin DNAzyme complex formation. In the detection principle, the first step involves ssDNA hybridization with a padlock probe (PLP) DNA, which can discriminate a single base mismatch. The successful ligation is followed by an RCA event to generate an abundance of G-quadruplexes (GQ-RCA) which are then transformed into a DNAzyme (G-quadruplex/hemin complex) by the addition of hemin. The color change from colorless 3,3',5,5'-tetramethylbenzidine (TMB) into colored oxTMB when hydrogen peroxide (H2O2) is added indicated the presence of a mutation. The assay had a limit of detection (LOD) of 2.14 pM. Mutations in samples from breast cancer patients were successfully detected with an accuracy of 100% when compared to Sanger sequencing results. The method is easily applicable even in resource poor setting regions given that it doesn't require any sophisticated or expensive instruments, and the signal readout is detectable simply by the naked eye. Our assay might be a useful tool for genetic analysis and clinical molecular diagnosis for breast cancer risk assessment and early detection.


Subject(s)
Colorimetry , DNA, Catalytic , G-Quadruplexes , Nucleic Acid Amplification Techniques , DNA, Catalytic/chemistry , DNA, Catalytic/metabolism , DNA, Catalytic/genetics , Colorimetry/methods , Nucleic Acid Amplification Techniques/methods , Humans , Hemin/chemistry , Breast Neoplasms/genetics , Limit of Detection , Polymorphism, Single Nucleotide , Mutation , Benzidines/chemistry , Female , Hydrogen Peroxide/chemistry
3.
J Mater Chem B ; 12(35): 8647-8654, 2024 Sep 11.
Article in English | MEDLINE | ID: mdl-39138924

ABSTRACT

Fluoroquinolones are a widely used class of antibiotics, with a large variety, which are frequently monitored in the aqueous environment, threatening ecological and human health. To date, effective degradation of fluoroquinolone antibiotics remains a major challenge. Focused on the broad-spectrum degradation of fluoroquinolone antibiotics, a novel biomimetic peroxidase nanozyme named Hemin-His-Fe (HHF)-peroxidase nanozyme was synthesized through a green and rapid "one-pot" method involving hemin, Fmoc-L-His and Fe2+ as precursors. After systematic optimization of the reaction conditions, fluoroquinolone antibiotics can be degraded by the HHF-peroxidase nanozyme when supplemented with H2O2 in acidic environments. Through validation and analysis, it was proved that the generated strong oxidative hydroxyl radicals are the main active species in the degradation process. In addition, it was verified that this method shows great universal applicability in real water samples.


Subject(s)
Anti-Bacterial Agents , Fluoroquinolones , Hemin , Iron , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Hemin/chemistry , Hemin/metabolism , Fluoroquinolones/chemistry , Fluoroquinolones/pharmacology , Fluoroquinolones/metabolism , Iron/chemistry , Histidine/chemistry , Peroxidase/metabolism , Peroxidase/chemistry , Biomimetic Materials/chemistry , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/metabolism , Nanostructures/chemistry , Particle Size , Water Pollutants, Chemical/chemistry , Peroxidases/metabolism , Peroxidases/chemistry
4.
Nanoscale ; 16(34): 16195-16203, 2024 Aug 29.
Article in English | MEDLINE | ID: mdl-39140185

ABSTRACT

Synergetic combination therapy is emerging as one of the most promising approaches for cancer treatment. Among the various therapeutic approaches, PDT has received particular attention due to its non-invasive nature. However, the therapeutic performance of PDT is severely affected by tumour hypoxia. Herein, we report a supramolecular strategy for the fabrication of a PDT-active 2D nanosheet loaded with a POD mimicking DNAzyme for the synergetic combination of PDT and CDT for targeted cancer therapy. Assembly of biotin-functionalized BODIPY (1) and cationic ß-cyclodextrin (ß-CD+) leads to the formation of a 1/ß-CD+ nanosheet with positively charged ß-CD+ on the surface of the sheet. The cationic face of the 1/ß-CD+ sheet was then loaded with a POD-mimicking Hem-loaded G-quadruplex aptamer (Hem/DNA1) via electrostatic interactions (1/ß-CD+/Hem/DNA1). Cellular internalization of the 1/ß-CD+/Hem/DNA1 nanosheet occurs via a receptor-mediated endocytic pathway, which then undergoes lysosomal escape. Subsequently, Hem/DNA1 on the surface of 1/ß-CD+/Hem/DNA1 reacts with endogenous H2O2via the Fenton pathway to produce ˙OH and O2. Moreover, under cellular conditions, Hem inside the 1/ß-CD+/Hem/DNA1 nanosheet produces Fe2+, which then undergoes another Fenton reaction to produce ˙OH and O2. The Fe3+ generated after the Fenton reaction is then reduced in situ to Fe2+ by glutathione for the next Fenton cycle. At the same time, photoirradiation of the 1/ß-CD+ nanosheet using a 635 nm laser produces 1O2via the PDT pathway by using endogenous O2. The most remarkable feature of the present nanoformulation is the cooperativity in its therapeutic action, wherein O2 produced during the CDT pathway was used by the 1/ß-CD+ sheet for improving its PDT efficacy in the hypoxic tumor microenvironment. This work represents a unique combination of CDT and PDT for targeted cancer therapy, wherein the CDT action of the nanoagent enhances the PDT efficacy and we strongly believe that this approach would encourage researchers to design similar combination therapy for advancements in the treatment of cancer.


Subject(s)
Hemin , Nanostructures , Photochemotherapy , beta-Cyclodextrins , Humans , beta-Cyclodextrins/chemistry , Nanostructures/chemistry , Nanostructures/therapeutic use , Hemin/chemistry , G-Quadruplexes , Animals , Mice , Photosensitizing Agents/chemistry , Photosensitizing Agents/therapeutic use , Photosensitizing Agents/pharmacology , Cell Line, Tumor , Aptamers, Nucleotide/chemistry , Aptamers, Nucleotide/pharmacology , Boron Compounds/chemistry , Boron Compounds/pharmacology , Neoplasms/drug therapy , Neoplasms/pathology , Neoplasms/metabolism
5.
Anal Chem ; 96(36): 14590-14597, 2024 Sep 10.
Article in English | MEDLINE | ID: mdl-39183481

ABSTRACT

Hemin/G-quadruplex (hG4) complexes are frequently used as artificial peroxidase-like enzymatic systems (termed G4 DNAzymes) in many biosensing applications, in spite of a rather low efficiency, notably in terms of detection limits. To tackle this issue, we report herein a strategy in which hemin is chemically modified with the amino acids found in the active site of parent horseradish peroxidase (HRP), with the aim of recreating an environment conducive to high catalytic activity. When hemin is conjugated with a single arginine, it associates with G4 to create an arginine-hemin/G4 (R-hG4) DNAzyme that exhibits improved catalytic performances, characterized by kinetic analysis and DFT calculations. The practical relevance of this system was demonstrated with the implementation of biosensing assays enabling the chemiluminescent detection of G4-containing DNA and colorimetry detection of the flap endonuclease 1 (FEN1) enzyme with a high efficiency and sensitivity. Our results thus provide a guide for future enzyme engineering campaigns to create ever more efficient peroxidase-mimicking DNA-based systems.


Subject(s)
Arginine , DNA, Catalytic , G-Quadruplexes , Hemin , Hemin/chemistry , DNA, Catalytic/chemistry , DNA, Catalytic/metabolism , Arginine/chemistry , Arginine/metabolism , Biosensing Techniques/methods , Peroxidase/chemistry , Peroxidase/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Limit of Detection , Colorimetry , Density Functional Theory
6.
Mikrochim Acta ; 191(9): 547, 2024 08 20.
Article in English | MEDLINE | ID: mdl-39162876

ABSTRACT

Atherosclerosis cardiovascular disease (ASCVD) has become one of the leading death causes in humans. Low-density lipoprotein (LDL) is an important biomarker for assessing ASCVD risk level. Thus, monitoring LDL levels can be an important means for early diagnosis of ASCVD. Herein, a novel electrochemical aptasensor for determination LDL was designed based on nitrogen-doped reduced graphene oxide-hemin-manganese oxide nanoparticles (NrGO-H-Mn3O4 NPs) integrated with clustered regularly interspaced short palindromic repeats and associated proteins (CRISPR/Cas12a) system. NrGO-H-Mn3O4 NPs not only have a large surface area and remarkable enhanced electrical conductivity but also the interconversion of different valence states of iron in hemin can provide an electrical signal. Nonspecific single-stranded DNA (ssDNA) was bound to NrGO-H-Mn3O4 NPs to form a signaling probe and was immobilized on the electrode surface. The CRISPR/Cas12a system has excellent trans-cleavage activity, which can be used to cleave ssDNA, thus detaching the NrGO-H-Mn3O4 NPs from the sensing interface and attenuating the electrical signal. Significant signal change triggered by the target was ultimately obtained, thus achieving sensitive detection of the LDL in range from 0.005 to 1000.0 nM with the detection limit of 0.005 nM. The proposed sensor exhibited good stability, selectivity, and stability and achieved reliable detection of LDL in serum samples, demonstrating its promising application prospects for the diagnostic application of LDL.


Subject(s)
Aptamers, Nucleotide , Biosensing Techniques , CRISPR-Cas Systems , Electrochemical Techniques , Graphite , Hemin , Limit of Detection , Lipoproteins, LDL , Manganese Compounds , Oxides , Manganese Compounds/chemistry , Lipoproteins, LDL/blood , Lipoproteins, LDL/chemistry , Humans , Electrochemical Techniques/methods , Oxides/chemistry , Graphite/chemistry , Aptamers, Nucleotide/chemistry , Hemin/chemistry , Biosensing Techniques/methods , DNA, Single-Stranded/chemistry , Nanoparticles/chemistry
7.
Free Radic Res ; 58(6-7): 430-438, 2024.
Article in English | MEDLINE | ID: mdl-39099129

ABSTRACT

Heme-initiated decomposition of unsaturated fatty acid hydroperoxides creates alkoxyl radicals that propagate a complex series of reactions to hydroxy, keto, epoxy and aldehydic products. Herein, among the products from the hematin-catalyzed degradation of 9-hydroperoxy-linoleic acid (9-HPODE), we observed a double peak on normal-phase HPLC that resolved on RP-HPLC into equal proportions of two epoxy-allylic ketones with identical UV spectra. Their proton NMR spectra were also indistinguishable and consistent with 9,10-trans-epoxy-11E-13-keto- and 9-keto-10E-12,13-trans-epoxy-octadecenoic acids. Acid hydrolysis to the corresponding dihydroxy-ketones and GC-MS analysis identified the earlier eluting product on RP-HPLC as the 9,10-epoxy regio-isomer. Starting from the C9-hydroperoxide, recovery of the two epoxy-ketones in equal proportions suggests their formation from a common intermediate. Earlier work has proposed formation of a pseudo-symmetrical diepoxy radical (9,10-epoxy-11(•)-12,13-epoxy, derived from an epoxy allylic hydroperoxide precursor) in the carbon chain fragmentation leading to aldehydic products. This intermediate in pathways of alkoxyl radical reactions forms equal pairs of aldehydes, and now also a pair of epoxy-ketones, and based on mechanism the same products arise from either 9-HPODE or 13-HPODE. Our results point to the intermediacy of this diepoxy-carbinyl radical in the origin of at least two classes of linoleate peroxidation products, and it should be considered as a viable intermediate for homo-conjugated diene peroxidation in general. The reactions could contribute to the aldehydes and epoxy-ketones in tissues undergoing oxidative transformations of polyunsaturated fatty acids.


Subject(s)
Epoxy Compounds , Hemin , Ketones , Linoleic Acid , Peroxides , Hemin/chemistry , Peroxides/chemistry , Catalysis , Linoleic Acid/chemistry , Epoxy Compounds/chemistry , Ketones/chemistry , Free Radicals/chemistry , Molecular Structure , Chromatography, High Pressure Liquid
8.
Talanta ; 279: 126653, 2024 Nov 01.
Article in English | MEDLINE | ID: mdl-39098239

ABSTRACT

Patulin (PAT) is a mycotoxin-produced secondary metabolite that can contaminate foods, causing toxic effects on animal and human health. Therefore, for the first time, we have constructed a "turn-on" dual-mode aptamer sensor for PAT using oleic acid-coated upconversion nanomaterials (OA-UCNPs) and G-Quadruplex-hemin DNAzyme (G4-DNAzyme) as fluorescent and colorimetry probes. The sensor employs aptamers binding to PAT as recognition elements for specific molecule detection. Mxene-Au can be used as a biological inducer to assist OA-UCNPs in controlling fluorescence intensity. In addition, colorimetric signal amplification was performed using the trivalent G4-DNAzyme to increase detection sensitivity and reduce false positives. Under optimal conditions, the dual-mode aptasensor has a detection limit of 5.3 pg mL-1 in fluorescence and 2.4 pg mL-1 in colorimetric methods, respectively, with the wider linear range and limit of detection (LOD) of the colorimetric assay. The combination aptasensor can detect PAT with high sensitivity and high specificity and has broad application prospects in the field of food safety detection.


Subject(s)
Aptamers, Nucleotide , Biosensing Techniques , DNA, Catalytic , G-Quadruplexes , Hemin , Patulin , Patulin/analysis , Aptamers, Nucleotide/chemistry , DNA, Catalytic/chemistry , Biosensing Techniques/methods , Hemin/chemistry , Colorimetry/methods , Limit of Detection , Nanostructures/chemistry
9.
Mikrochim Acta ; 191(9): 569, 2024 08 30.
Article in English | MEDLINE | ID: mdl-39212834

ABSTRACT

An electrochemical aptasensor was developed by utilizing a DNA walker driven by catalytic hairpin assembly (CHA) with kanamycin as the model analyte. Kanamycin bound to the aptamer, causes the release of DNA walker, triggers the CHA reaction, leads to the cyclic movement of the walker's long arm, and results in cascade amplification of the signal. The guanine-rich sequences of the double-stranded products produced by CHA were folded to form G-quadruplex structures, with electrochemical active molecules Hemin embedded, forms G-quadruplex/Hemin complexes in situ on the electrode surface, thereby achieving sensitive, efficient, and label-free detection of kanamycin with a limit of detection (LOD) of 0.27 pM (S/N = 3). Meaningfully, the aptasensor demonstrated high sensitivity and reliability in the detection of kanamycin in milk and livestock wastewater samples, suggesting that it has great potential for application in detecting antibiotics in food products and water samples from the environment.


Subject(s)
Anti-Bacterial Agents , Aptamers, Nucleotide , Biosensing Techniques , Electrochemical Techniques , G-Quadruplexes , Hemin , Kanamycin , Limit of Detection , Milk , Aptamers, Nucleotide/chemistry , Kanamycin/analysis , Anti-Bacterial Agents/analysis , Electrochemical Techniques/methods , Biosensing Techniques/methods , Milk/chemistry , Hemin/chemistry , Animals , Wastewater/analysis , DNA/chemistry , Catalysis , Electrodes
10.
Anal Chim Acta ; 1323: 343070, 2024 Sep 22.
Article in English | MEDLINE | ID: mdl-39182972

ABSTRACT

BACKGROUND: Rapid and sensitive colorimetric detection methods are crucial for diseases diagnosis, particularly those involving proteases like furin, which are implicated in various conditions, including cancer. Traditional detection methods for furin suffer from limitations in sensitivity and practicality for on-site detection, motivating the development of novel detection strategies. Therefore, developing a simple, enzyme-free, and rapid colorimetric analysis method with high sensitivity for furin detection is imperative. RESULTS: Herein, we have proposed a colorimetric method in this work for the first time to detect furin, leveraging the assembly of G-quadruplex/hemin DNAzyme with enhanced catalytic activity. Specifically, a peptide-DNA conjugate (PDC) comprising a furin-recognition peptide and flanking DNA sequences for signal amplification is designed to facilitate the DNAzyme assembly. Upon furin treatment, PDC cleavage triggers a cyclic catalytic hairpin assembly reaction to form the complementary double-stranded structures by hairpin 1 (HP1) and hairpin 2 (HP2), bringing the G-quadruplex sequence in HP1 closer to hemin on HP2. Moreover, the resulting G-quadruplex/hemin DNAzymes exhibit robust peroxidase-like activity, enabling the catalysis of the colorimetric reaction of ABTS2- for furin detection. Our method demonstrates high sensitivity, rapid response, and compatibility with complex sample matrices, achieving a detection limit as low as 1.1 pM. SIGNIFICANCE: The DNAzyme reported in this work exhibits robust catalytic activity, enabling high sensitivity and good efficiency for the detection. By eliminating the requirement for exogenous enzymes, our approach enables visual furin detection without expensive instrumentation and reagents, promising significant utility in biomedical and clinical diagnostic applications. Given the various design of peptide sequence and the programmability of DNA, it can be readily applied to analyzing other useful tumor biomarkers.


Subject(s)
Colorimetry , DNA, Catalytic , Furin , G-Quadruplexes , Hemin , DNA, Catalytic/chemistry , DNA, Catalytic/metabolism , Colorimetry/methods , Hemin/chemistry , Furin/metabolism , Furin/analysis , Furin/chemistry , Humans , Limit of Detection , Biosensing Techniques/methods , Biocatalysis
11.
Anal Methods ; 16(29): 4917-4937, 2024 Jul 25.
Article in English | MEDLINE | ID: mdl-38984495

ABSTRACT

Pathogens endanger food safety, agricultural productivity, and human health. Those pathogens are spread through direct/indirect contact, airborne transmission and food/waterborne transmission, and some cause severe health consequences. As the population grows and global connections intensify, the transmission of infectious diseases expands. Traditional detection methods for pathogens still have some shortcomings, such as time-consuming procedures and high operational costs. To fulfil the demands for simple and effective detection, numerous biosensors have been developed. DNAzyme, a unique DNA structure with catalytic activity, is gradually being applied in the field of pathogen detection owing to its ease of preparation and use. In this review, we concentrated on the two main types of DNAzyme, hemin/G-quadruplex DNAzyme (HGD) and RNA-cleaving DNAzyme (RCD), explaining their research progress in pathogen detection. Furthermore, we introduced two additional novel DNAzymes, CLICK 17 DNAzyme and Supernova DNAzyme, which showed promising potential in pathogen detection. Finally, we summarize the strengths and weaknesses of these four DNAzymes and offer feasible recommendations for the development of biosensors.


Subject(s)
Biosensing Techniques , DNA, Catalytic , DNA, Catalytic/chemistry , DNA, Catalytic/metabolism , Biosensing Techniques/methods , Humans , G-Quadruplexes , Hemin/chemistry , Bacteria/isolation & purification
12.
Anal Biochem ; 694: 115613, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39002744

ABSTRACT

RNA G4, as an integral branch of G4 structure, possesses distinct interactions with ligands compared to the common DNA G4, thus the investigation of RNA G4/ligand interactions might be considered as a fresh breakthrough to improve the biosensing performance of G4/ligand system. In this study, we comparatively explored the structural and functional mechanisms of RNA G4 and DNA G4 in the interaction with ligands, hemin and thioflavin T (ThT), utilizing the classical PS2.M sequence as a model. We found that although the catalytic performance of RNA G4/hemin system was lower than DNA G4/hemin, RNA G4/ThT fluorescence system exhibited a significant improvement (2∼3-fold) compared to DNA G4/ThT, and adenine modification could further enhance the signaling. Further, by exploring the interaction between RNA G4 and ThT, we deemed that RNA G4 and ThT were stacked in a bimolecular mode compared to single-molecule binding of DNA G4/ThT, thus more strongly limiting the structural spin in ThT excited state. Further, RNA G4/ThT displayed higher environmental tolerance and lower ion dependence than DNA G4/ThT. Finally, we employed RNA G4/ThT as a highly sensitive label-free fluorescent signal output system for in situ imaging of isoforms BCR-ABL e13a2 and e14a2. Overall, this study successfully screened a high-performance RNA G4 biosensing system through systematic RNA G4/ligands interaction studies, which was expected to provide a promising reference for subsequent G4/ligand research.


Subject(s)
Benzothiazoles , G-Quadruplexes , RNA , Ligands , RNA/chemistry , RNA/metabolism , Benzothiazoles/chemistry , Humans , Hemin/chemistry , Hemin/metabolism
13.
J Hazard Mater ; 476: 135172, 2024 Sep 05.
Article in English | MEDLINE | ID: mdl-38996685

ABSTRACT

Developing sensors with high selectivity and sensitivity is of great significance for pesticide analysis in environmental assessment. Herein, a versatile three-way sensor array was designed for the detection of the pesticide atrazine, based on the integration of catalytic hairpin assembly (CHA) amplification and three-mode signal transducers. With atrazine, CHA was triggered to generate abundant G-quadruplex. The produced G-quadruplex hybrid could assemble with thioflavin T (TFT) or hemin to mimic enzyme and induce the fluorescence enhancement by TFT, or the colorimetric increase by the oxidized chromogenic substrate and the naked-eye color change by inhibiting the L-cysteine-mediated aggregation of gold nanoparticles. A distinctive three-mode array was successfully constructed with convenience, on-site accessibility and high sensitivity for enzyme-free practical analysis of atrazine. It is also effective and reliable for analyzing real samples including paddy water, paddy soil and polished rice. The detection limits for atrazine were as low as 7.4 pg/mL by colorimetric observation and 0.25 pg/mL by fluorescent detection. Furthermore, the array was exploited to monitor the residue, distribution and bioaccumulation of atrazine in maize and rice for food security and environmental assessment. Hence, this work presented a versatile example for sensitive and on-site all-in-one pesticide analysis arrays with multiple signal report modes.


Subject(s)
Atrazine , Crops, Agricultural , DNA, Catalytic , G-Quadruplexes , Atrazine/analysis , DNA, Catalytic/chemistry , DNA, Catalytic/metabolism , Crops, Agricultural/chemistry , Aptamers, Nucleotide/chemistry , Environmental Monitoring/methods , Biosensing Techniques/methods , Oryza/chemistry , Zea mays/chemistry , Herbicides/analysis , Herbicides/chemistry , Pesticides/analysis , Pesticides/chemistry , Metal Nanoparticles/chemistry , Gold/chemistry , Benzothiazoles/chemistry , Limit of Detection , Hemin/chemistry , Water Pollutants, Chemical/analysis , Colorimetry
14.
Methods Mol Biol ; 2839: 213-223, 2024.
Article in English | MEDLINE | ID: mdl-39008255

ABSTRACT

The utilization of ultra-performance liquid chromatography (UPLC) to analyze the various intermediates in the heme biosynthetic pathway is presented. The first product, ALA, was derivatized to a highly fluorescent pyrrolizine; PBG, the second intermediate, was enzymatically converted to uroporphyrinogen, and all the porphyrinogen intermediates were oxidized in acid to form fluorescent porphyrins. Heme was measured as hemin. The stable porphyrin forms of the intermediates, are then resolved and quantified by UPLC. Further details about the various methods are discussed to promote successful UPLC analyses. Method variations that may be preferable in certain situations are also presented.


Subject(s)
Heme , Heme/biosynthesis , Heme/metabolism , Chromatography, High Pressure Liquid/methods , Aminolevulinic Acid/metabolism , Hemin/metabolism , Hemin/chemistry
15.
Talanta ; 277: 126398, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38876029

ABSTRACT

Metallothionein (MT) has shown to be an important biomarker for environmental monitoring and various diseases, due to its significant binding ability to heavy metal ions. On the basis of such a characteristic and the Hg2+-stabilized DNA duplex (Hg2+-dsDNA) probe, as well as a new autocatalytic hairpin assembly (aCHA)/DNAzyme cascaded signal enhancement strategy, the construction of a highly sensitive and label-free electrochemical MT biosensor is described. Target MT molecules bind Hg2+ in Hg2+-dsDNA to disrupt the duplex structure and to release ssDNA sequences, which trigger subsequent aCHA for efficient production of mimic aCHA triggering strands and many bivalent DNAzymes. The signal hairpins on the electrode are then cyclically cleaved by DNAzyme amplification cascade to liberate plenty G-quadruplex sequences, which bind hemin and yield largely enhanced currents for sensitive assay of MT with a detection limit of 0.217 nM in a label-free approach. Such sensor also shows selective discrimination capability to MT against other interfering proteins and assay of MT in normal serums with dilution has also been verified, indicating its potential for highly sensitive detection of different heavy metal ion binding molecules for various application scenarios.


Subject(s)
Biosensing Techniques , DNA, Catalytic , Electrochemical Techniques , Mercury , Metallothionein , DNA, Catalytic/chemistry , DNA, Catalytic/metabolism , Metallothionein/chemistry , Electrochemical Techniques/methods , Biosensing Techniques/methods , Mercury/analysis , Mercury/chemistry , Humans , Limit of Detection , G-Quadruplexes , Electrodes , Hemin/chemistry , Catalysis , DNA/chemistry
16.
J Pharm Biomed Anal ; 248: 116328, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-38943819

ABSTRACT

Oxylipins are important low abundant signaling molecules in living organisms. In platelets they play a primary role in platelet activation and aggregation in the course of thrombotic events. In vivo, they are enzymatically synthesized by cyclooxygenases, lipoxygenases, or cytochrome P450 isoenzmes, resulting in diverse polyunsaturated fatty acid (FA) metabolites including hydroxy-, epoxy-, oxo-FAs, and endoperoxides with pro-thrombotic or anti-thrombotic effects. In a recent study, it was reported that hemin induces platelet death which was accompanied by enhanced reactive oxygen species (ROS) production (measured by flow cytometry) and lipid peroxidation (as determined by proxy using flow cytometry with BODIPY-C11 as sensor). Lipidomic studies further indicated significant changes of the platelet lipidome upon ex vivo hemin treatment, amongst others oxylipins were increased. The effect could be (at least partly) reversed by riociguat/diethylamine NONOate diethylammonium salt (DEA/NO) which modulates the soluble guanylate cyclase(sGC)-cGMP-cGMP-dependent protein kinase I(cGKI) signaling axis. In the original work, oxylipins were measured by a non-enantioselective UHPLC-tandem-MS assay which may not give the full picture whether oxylipin elevation is due to ROS or by enzymatic processes. We present here the study of the stereochemical disposition of hemin-induced platelet lipidome alterations using Chiralpak IA-U column with amylose tris(3,5-dimethylphenylcarbamate) chiral selector immobilized on 1.6 µm silica particles. It was found that the major platelet oxylipins 12-HETE, 12-HEPE and 14-HDoHE (from 12-LOX) and 12-HHT (from COX-1) were present in S-configuration indicating their enzymatic formation. On the other hand, both R and S enantiomers of 9- and 13-HODE, 11- and 15-HETE were detected, possibly due to enzyme promiscuity rather than non-specific oxidation (by ROS or autoxidation), as confirmed by multi-loop based two-dimensional LC-MS using selective comprehensive mode with achiral RPLC in the 1st dimension and chiral LC in the 2nd using a multiple heart-cutting interface. For 12-HETrE, a peak at the retention time of the R-enantiomer was ruled out as isobaric interference by 2D-LC-MS. In particular, arachidonic acid derivates 12(S)-HHT, 11(R)-HETE and 15(S)-HETE were found to be sensitive to hemin and cGMP modulation.


Subject(s)
Blood Platelets , Cyclic GMP , Hemin , Oxylipins , Tandem Mass Spectrometry , Oxylipins/pharmacology , Oxylipins/chemistry , Tandem Mass Spectrometry/methods , Stereoisomerism , Blood Platelets/drug effects , Blood Platelets/metabolism , Cyclic GMP/metabolism , Humans , Hemin/metabolism , Hemin/chemistry , Chromatography, Liquid/methods , Reactive Oxygen Species/metabolism , Lipidomics/methods , Lipid Peroxidation/drug effects
17.
Lab Chip ; 24(14): 3521-3527, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38939907

ABSTRACT

Zeolitic imidazolate framework-8 (ZIF-8) encapsulating enzymatically active biomolecules has emerged as a novel biocompatible nanozyme and offers significant implications for bioanalysis of various biomarkers towards early diagnosis of severe diseases such as cancers. However, the rapid, continuous and scalable synthesis of these nanozymes still remains challenging. In this work, we proposed a novel microfluidic approach for rapid and continuous synthesis of hemin@ZIF-8 nanozyme. By employing a distinctive combination of zigzag-shaped channel and spiral channel with sudden expansion structures, we have enhanced the mixing efficiency within the chip and achieved effective encapsulation of hemin in ZIF-8. The resulting hemin@ZIF-8 nanoparticles exhibit peroxidase-like activity and are capable of detecting free H2O2 with a limit of detection (LOD) as low as 45 nM, as well as H2O2 secreted by viable cells with a detection threshold of approximately 10 cells per mL. By leveraging this method, we achieved successful detection of cancer cells and effective screening of anticancer drugs that induce oxidative stress injury in cancer cells. This innovative microfluidic strategy offers a new avenue for synthesizing functional nanocomposites to facilitate the development of next-generation diagnostic tools for early disease detection and personalized medicine.


Subject(s)
Antineoplastic Agents , Hemin , Metal-Organic Frameworks , Reactive Oxygen Species , Hemin/chemistry , Hemin/metabolism , Humans , Antineoplastic Agents/pharmacology , Antineoplastic Agents/chemistry , Reactive Oxygen Species/metabolism , Reactive Oxygen Species/analysis , Metal-Organic Frameworks/chemistry , Metal-Organic Frameworks/chemical synthesis , Metal-Organic Frameworks/pharmacology , Hydrogen Peroxide/analysis , Hydrogen Peroxide/chemistry , Microfluidic Analytical Techniques/instrumentation , Drug Screening Assays, Antitumor , Lab-On-A-Chip Devices , Zeolites/chemistry , Limit of Detection , Imidazoles
18.
Inorg Chem ; 63(26): 11986-12002, 2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38897979

ABSTRACT

Tau is a neuronal protein involved in axonal stabilization; however under pathological conditions, it triggers the deposition of insoluble neurofibrillary tangles, which are one of the biomarkers for Alzheimer's disease. The factors that might influence the fibrillation process are i) two cysteine residues in two pseudorepetitive regions, called R2 and R3, which can modulate protein-protein interaction via disulfide cross-linking; ii) an increase of reactive oxygen species affecting the post-translational modification of tau; and iii) cytotoxic levels of metals, especially ferric-heme (hemin), in hemolytic processes. Herein, we investigated how the cysteine-containing R3 peptide (R3C) and its Cys→Ala mutant (R3A) interact with hemin and how their binding affects the oxidative damage of the protein. The calculated binding constants are remarkably higher for the hemin-R3C complex (LogK1 = 5.90; LogK2 = 5.80) with respect to R3A (LogK1 = 4.44; LogK2 < 2), although NMR and CD investigations excluded the direct binding of cysteine as an iron axial ligand. Both peptides increase the peroxidase-like activity of hemin toward catecholamines and phenols, with a double catalytic efficiency detected for hemin-R3C systems. Moreover, the presence of cysteine significantly alters the susceptibility of R3 toward oxidative modifications, easily resulting in peptide dopamination and formation of cross-linked S-S derivatives.


Subject(s)
Cysteine , Hemin , tau Proteins , tau Proteins/chemistry , tau Proteins/metabolism , Hemin/chemistry , Hemin/metabolism , Cysteine/chemistry , Cysteine/metabolism , Humans , Protein Binding , Binding Sites , Peptides/chemistry , Peptides/metabolism
19.
Adv Sci (Weinh) ; 11(32): e2402237, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38924304

ABSTRACT

Nanomaterials excel in mimicking the structure and function of natural enzymes while being far more interesting in terms of structural stability, functional versatility, recyclability, and large-scale preparation. Herein, the story assembles hemin, histidine analogs, and G-quadruplex DNA in a catalytically competent supramolecular assembly referred to as assembly-activated hemin enzyme (AA-heminzyme). The catalytic properties of AA-heminzyme are investigated both in silico (by molecular docking and quantum chemical calculations) and in vitro (notably through a systematic comparison with its natural counterpart horseradish peroxidase, HRP). It is found that this artificial system is not only as efficient as HRP to oxidize various substrates (with a turnover number kcat of 115 s-1) but also more practically convenient (displaying better thermal stability, recoverability, and editability) and more economically viable, with a catalytic cost amounting to <10% of that of HRP. The strategic interest of AA-heminzyme is further demonstrated for both industrial wastewater remediation and biomarker detection (notably glutathione, for which the cost is decreased by 98% as compared to commercial kits).


Subject(s)
Hemin , Hemin/chemistry , Hemin/metabolism , G-Quadruplexes , Cost-Benefit Analysis/methods , Molecular Docking Simulation/methods , Catalysis , Nanostructures/chemistry , Wastewater/chemistry
20.
Anal Chem ; 96(19): 7763-7771, 2024 05 14.
Article in English | MEDLINE | ID: mdl-38699865

ABSTRACT

Given its pivotal role in modulating various pathological processes, precise measurement of nitric oxide (●NO) levels in physiological solutions is imperative. The key techniques include the ozone-based chemiluminescence (CL) reactions, amperometric ●NO sensing, and Griess assay, each with its advantages and drawbacks. In this study, a hemin/H2O2/luminol CL reaction was employed for accurately detecting ●NO in diverse solutions. We investigated how the luminescence kinetics was influenced by ●NO from two donors, nitrite and peroxynitrite, while also assessing the impact of culture medium components and reactive species quenchers. Furthermore, we experimentally and theoretically explored the mechanism of hemin oxidation responsible for the initiation of light generation. Although both hemin and ●NO enhanced the H2O2/luminol-based luminescence reactions with distinct kinetics, hemin's interference with ●NO/peroxynitrite- modulated their individual effects. Leveraging the propagated signal due to hemin, the ●NO levels in solution were estimated, observing parallel changes to those detected via amperometric detection in response to varying concentrations of the ●NO-donor. The examined reactions aid in comprehending the mechanism of ●NO/hemin/H2O2/luminol interactions and how these can be used for detecting ●NO in solution with minimal sample size demands. Moreover, the selectivity across different solutions can be improved by incorporating certain quenchers for reactive species into the reaction.


Subject(s)
Hemin , Molecular Probes , Nitric Oxide , Hemin/chemistry , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/analysis , Kinetics , Luminescent Measurements , Luminol/chemistry , Molecular Probes/chemistry , Nitric Oxide/analysis , Oxidation-Reduction , Peroxynitrous Acid/analysis , Peroxynitrous Acid/chemistry , Solutions
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