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1.
Spectrochim Acta A Mol Biomol Spectrosc ; 324: 124966, 2025 Jan 05.
Article in English | MEDLINE | ID: mdl-39153346

ABSTRACT

This study investigates the application of visible-short wavelength near-infrared hyperspectral imaging (Vis-SWNIR HSI) in the wavelength range of 400-950 nm and advanced chemometric techniques for diagnosing breast cancer (BC). The research involved 56 ex-vivo samples encompassing both cancerous and non-cancerous breast tissue from females. First, HSI images were analyzed using multivariate curve resolution-alternating least squares (MCR-ALS) to exploit pure spatial and spectral profiles of active components. Then, the MCR-ALS resolved spatial profiles were arranged in a new data matrix for exploration and discrimination between benign and cancerous tissue samples using principal component analysis (PCA) and partial least squares-discriminant analysis (PLS-DA). The PLS-DA classification accuracy of 82.1 % showed the potential of HSI and chemometrics for non-invasive detection of BC. Additionally, the resolved spectral profiles by MCR-ALS can be used to track the changes in the breast tissue during cancer and treatment. It is concluded that the proposed strategy in this work can effectively differentiate between cancerous and non-cancerous breast tissue and pave the way for further studies and potential clinical implementation of this innovative approach, offering a promising avenue for improving early detection and treatment outcomes in BC patients.


Subject(s)
Breast Neoplasms , Hyperspectral Imaging , Principal Component Analysis , Spectroscopy, Near-Infrared , Humans , Female , Breast Neoplasms/diagnosis , Least-Squares Analysis , Spectroscopy, Near-Infrared/methods , Hyperspectral Imaging/methods , Multivariate Analysis , Discriminant Analysis
2.
Food Chem ; 462: 140911, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39213969

ABSTRACT

This study presents a low-cost smartphone-based imaging technique called smartphone video imaging (SVI) to capture short videos of samples that are illuminated by a colour-changing screen. Assisted by artificial intelligence, the study develops new capabilities to make SVI a versatile imaging technique such as the hyperspectral imaging (HSI). SVI enables classification of samples with heterogeneous contents, spatial representation of analyte contents and reconstruction of hyperspectral images from videos. When integrated with a residual neural network, SVI outperforms traditional computer vision methods for ginseng classification. Moreover, the technique effectively maps the spatial distribution of saffron purity in powder mixtures with predictive performance that is comparable to that of HSI. In addition, SVI combined with the U-Net deep learning module can produce high-quality images that closely resemble the target images acquired by HSI. These results suggest that SVI can serve as a consumer-oriented solution for food authentication.


Subject(s)
Smartphone , Hyperspectral Imaging/methods , Image Processing, Computer-Assisted/methods , Food Contamination/analysis , Video Recording , Food Analysis
3.
Cancer Med ; 13(18): e70195, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39320133

ABSTRACT

BACKGROUND AND AIMS: The resect-and-discard strategy for colorectal polyps based on accurate optical diagnosis remains challenges. Our aim was to investigate the feasibility of hyperspectral imaging (HSI) for identifying colorectal polyp properties and diagnosis of colorectal cancer in fresh tissues during colonoscopy. METHODS: 144,900 two dimensional images generated from 161 hyperspectral images of colorectal polyp tissues were prospectively obtained from patients undergoing colonoscopy. A residual neural network model was trained with transfer learning to automatically differentiate colorectal polyps, validated by histopathologic diagnosis. The diagnostic performances of the HSI-AI model and endoscopists were calculated respectively, and the auxiliary efficiency of the model was evaluated after a 2-week interval. RESULTS: Quantitative HSI revealed histological differences in colorectal polyps. The HSI-AI model showed considerable efficacy in differentiating nonneoplastic polyps, non-advanced adenomas, and advanced neoplasia in vitro, with sensitivities of 96.0%, 94.0%, and 99.0% and specificities of 99.0%, 99.0%, and 96.5%, respectively. With the assistance of the model, the median negative predictive value of neoplastic polyps increased from 50.0% to 88.2% (p = 0.013) in novices. CONCLUSION: This study demonstrated the feasibility of using HSI as a diagnostic tool to differentiate neoplastic colorectal polyps in vitro and the potential of AI-assisted diagnosis synchronized with colonoscopy. The tool may improve the diagnostic performance of novices and facilitate the application of resect-and-discard strategy to decrease the cost.


Subject(s)
Artificial Intelligence , Colonic Polyps , Colonoscopy , Colorectal Neoplasms , Hyperspectral Imaging , Humans , Pilot Projects , Colonic Polyps/diagnostic imaging , Colonic Polyps/surgery , Colonic Polyps/pathology , Colonic Polyps/diagnosis , Colonoscopy/methods , Female , Male , Colorectal Neoplasms/diagnostic imaging , Colorectal Neoplasms/surgery , Colorectal Neoplasms/diagnosis , Colorectal Neoplasms/pathology , Middle Aged , Hyperspectral Imaging/methods , Aged , Prospective Studies , Neural Networks, Computer , Adult , Feasibility Studies , Diagnosis, Computer-Assisted/methods
4.
J Biomed Opt ; 29(9): 093509, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39318967

ABSTRACT

Significance: Diffuse optical modalities such as broadband near-infrared spectroscopy (bNIRS) and hyperspectral imaging (HSI) represent a promising alternative for low-cost, non-invasive, and fast monitoring of living tissue. Particularly, the possibility of extracting the molecular composition of the tissue from the optical spectra deems the spectroscopy techniques as a unique diagnostic tool. Aim: No established method exists to streamline the inference of the biochemical composition from the optical spectrum for real-time applications such as surgical monitoring. We analyze a machine learning technique for inference of changes in the molecular composition of brain tissue. Approach: We propose modifications to the existing learnable methodology based on the Beer-Lambert law. We evaluate the method's applicability to linear and nonlinear formulations of this physical law. The approach is tested on data obtained from the bNIRS- and HSI-based monitoring of brain tissue. Results: The results demonstrate that the proposed method enables real-time molecular composition inference while maintaining the accuracy of traditional methods. Preliminary findings show that Beer-Lambert law-based spectral unmixing allows contrasting brain anatomy semantics such as the vessel tree and tumor area. Conclusion: We present a data-driven technique for inferring molecular composition change from diffuse spectroscopy of brain tissue, potentially enabling intra-operative monitoring.


Subject(s)
Brain , Machine Learning , Spectroscopy, Near-Infrared , Spectroscopy, Near-Infrared/methods , Humans , Brain/diagnostic imaging , Brain/metabolism , Hyperspectral Imaging/methods , Brain Chemistry , Algorithms
5.
J Biomed Opt ; 29(9): 093510, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39318966

ABSTRACT

Significance: Hyperspectral imaging sensors have rapidly advanced, aiding in tumor diagnostics for in vivo brain tumors. Linescan cameras effectively distinguish between pathological and healthy tissue, whereas snapshot cameras offer a potential alternative to reduce acquisition time. Aim: Our research compares linescan and snapshot hyperspectral cameras for in vivo brain tissues and chromophore identification. Approach: We compared a linescan pushbroom camera and a snapshot camera using images from 10 patients with various pathologies. Objective comparisons were made using unnormalized and normalized data for healthy and pathological tissues. We utilized the interquartile range (IQR) for the spectral angle mapping (SAM), the goodness-of-fit coefficient (GFC), and the root mean square error (RMSE) within the 659.95 to 951.42 nm range. In addition, we assessed the ability of both cameras to capture tissue chromophores by analyzing absorbance from reflectance information. Results: The SAM metric indicates reduced dispersion and high similarity between cameras for pathological samples, with a 9.68% IQR for normalized data compared with 2.38% for unnormalized data. This pattern is consistent across GFC and RMSE metrics, regardless of tissue type. Moreover, both cameras could identify absorption peaks of certain chromophores. For instance, using the absorbance measurements of the linescan camera, we obtained SAM values below 0.235 for four peaks, regardless of the tissue and type of data under inspection. These peaks are one for cytochrome b in its oxidized form at λ = 422 nm , two for HbO 2 at λ = 542 nm and λ = 576 nm , and one for water at λ = 976 nm . Conclusion: The spectral signatures of the cameras show more similarity with unnormalized data, likely due to snapshot sensor noise, resulting in noisier signatures post-normalization. Comparisons in this study suggest that snapshot cameras might be viable alternatives to linescan cameras for real-time brain tissue identification.


Subject(s)
Brain Neoplasms , Brain , Hyperspectral Imaging , Humans , Brain/diagnostic imaging , Hyperspectral Imaging/methods , Hyperspectral Imaging/instrumentation , Brain Neoplasms/diagnostic imaging , Brain Neoplasms/pathology , Image Processing, Computer-Assisted/methods , Equipment Design
6.
J Biomed Opt ; 29(9): 093507, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39247058

ABSTRACT

Significance: Hyperspectral cameras capture spectral information at each pixel in an image. Acquired spectra can be analyzed to estimate quantities of absorbing and scattering components, but the use of traditional fitting algorithms over megapixel images can be computationally intensive. Deep learning algorithms can be trained to rapidly analyze spectral data and can potentially process hyperspectral camera data in real time. Aim: A hyperspectral camera was used to capture 1216 × 1936 pixel wide-field reflectance images of in vivo human tissue at 205 wavelength bands from 420 to 830 nm. Approach: The optical properties of oxyhemoglobin, deoxyhemoglobin, melanin, and scattering were used with multi-layer Monte Carlo models to generate simulated diffuse reflectance spectra for 24,000 random combinations of physiologically relevant tissue components. These spectra were then used to train an artificial neural network (ANN) to predict tissue component concentrations from an input reflectance spectrum. Results: The ANN achieved low root mean square errors in a test set of 6000 independent simulated diffuse reflectance spectra while calculating concentration values more than 4000× faster than a conventional iterative least squares approach. Conclusions: In vivo finger occlusion and gingival abrasion studies demonstrate the ability of this approach to rapidly generate high-resolution images of tissue component concentrations from a hyperspectral dataset acquired from human subjects.


Subject(s)
Deep Learning , Hemoglobins , Hyperspectral Imaging , Melanins , Humans , Melanins/analysis , Melanins/chemistry , Hemoglobins/analysis , Hyperspectral Imaging/methods , Monte Carlo Method , Scattering, Radiation , Image Processing, Computer-Assisted/methods , Algorithms , Neural Networks, Computer , Fingers/diagnostic imaging
7.
Sensors (Basel) ; 24(17)2024 Aug 30.
Article in English | MEDLINE | ID: mdl-39275569

ABSTRACT

The digitization of pathology departments in hospitals around the world is now a reality. The current commercial solutions applied to digitize histopathological samples consist of a robotic microscope with an RGB-type camera attached to it. This technology is very limited in terms of information captured, as it only works with three spectral bands of the visible electromagnetic spectrum. Therefore, we present an automated system that combines RGB and hyperspectral technology. Throughout this work, the hardware of the system and its components are described along with the developed software and a working methodology to ensure the correct capture of histopathological samples. The software is integrated by the controller of the microscope, which features an autofocus functionality, whole slide scanning with a stitching algorithm, and hyperspectral scanning functionality. As a reference, the time to capture and process a complete sample with 20 regions of high biological interest using the proposed method is estimated at a maximum of 79 min, reducing the time required by a manual operator by at least three times. Both hardware and software can be easily adapted to other systems that might benefit from the advantages of hyperspectral technology.


Subject(s)
Algorithms , Image Processing, Computer-Assisted , Microscopy , Software , Microscopy/methods , Microscopy/instrumentation , Image Processing, Computer-Assisted/methods , Humans , Databases, Factual , Hyperspectral Imaging/methods , Hyperspectral Imaging/instrumentation
8.
PLoS One ; 19(9): e0307329, 2024.
Article in English | MEDLINE | ID: mdl-39231155

ABSTRACT

Soyabean is an incredibly significant component of Chinese agricultural product, and categorizing soyabean seeds allows for a better understanding of the features, attributes, and applications of many species of soyabean. This enables farmers to choose appropriate seeds for sowing in order to increase production and quality. As a result, this thesis provides a method for classifying soybean seeds that uses hyperspectral RGB picture reconstruction. Firstly, hyperspectral images of seven varieties of soybean, H1, H2, H3, H4, H5, H6 and H7, were collected by hyperspectral imager, and by using the principle of the three base colours, the R, G and B bands which have more characteristic information are selected to reconstruct the images with different texture and colour characteristics to generate a new dataset for seed segmentation, and finally, a comparison is made with the classification effect of the seven models. The experimental results in ResNet34 show that the classification accuracy of the dataset before and after RGB reconstruction increases from 88.87% to 91.75%, demonstrating that RGB image reconstruction can strengthen image features; ResNet18, ResNet34, ResNet50, ResNet101, CBAM-ResNet34, SENet-ResNet34, and SENet-ResNet34-DCN models have classification accuracies of 72.25%, 91.75%, 89%, 88.48%, 92.28%, 92.80%, and 94.24%, respectively.SENet-ResNet34-DCN achieves the greatest classification accuracy results, with a model loss of roughly 0.3. The proposed SENet-ResNet34-DCN model is the most effective at classifying soybean seeds. By classifying and optimally selecting seed varieties, agricultural production can become more scientific, efficient, and sustainable, resulting in higher returns for farmers and contributing to global food security and sustainable development.


Subject(s)
Glycine max , Hyperspectral Imaging , Seeds , Glycine max/classification , Hyperspectral Imaging/methods , Image Processing, Computer-Assisted/methods , Color
9.
Int J Mol Sci ; 25(17)2024 Sep 04.
Article in English | MEDLINE | ID: mdl-39273532

ABSTRACT

Ginkgo biloba is a famous economic tree. Ginkgo leaves have been utilized as raw materials for medicines and health products due to their rich active ingredient composition, especially flavonoids. Since the routine measurement of total flavones is time-consuming and destructive, rapid, non-destructive detection of total flavones in ginkgo leaves is of significant importance to producers and consumers. Hyperspectral imaging technology is a rapid and non-destructive technique for determining the total flavonoid content. In this study, we discuss five modeling methods, and three spectral preprocessing methods are discussed. Bayesian Ridge (BR) and multiplicative scatter correction (MCS) were selected as the best model and the best pretreatment method, respectively. The spectral prediction results based on the BR + MCS treatment were very accurate (RTest2 = 0.87; RMSETest = 1.03 mg/g), showing a high correlation with the analytical measurements. In addition, we also found that the more and deeper the leaf cracks, the higher the flavonoid content, which helps to evaluate leaf quality more quickly and easily. In short, hyperspectral imaging is an effective technique for rapid and accurate determination of total flavonoids in ginkgo leaves and has great potential for developing an online quality detection system for ginkgo leaves.


Subject(s)
Flavonoids , Ginkgo biloba , Plant Leaves , Ginkgo biloba/chemistry , Plant Leaves/chemistry , Flavonoids/analysis , Deep Learning , Hyperspectral Imaging/methods , Plant Extracts/chemistry , Plant Extracts/analysis , Bayes Theorem
10.
Talanta ; 280: 126793, 2024 Dec 01.
Article in English | MEDLINE | ID: mdl-39222596

ABSTRACT

Dry matter content (DMC), firmness and soluble solid content (SSC) are important indicators for assessing the quality attributes and determining the maturity of kiwifruit. However, traditional measurement methods are time-consuming, labor-intensive, and destructive to the kiwifruit, leading to resource wastage. In order to solve this problem, this study has tracked the flowering, fruiting, maturing and collecting processes of Ya'an red-heart kiwifruit, and has proposed a non-destructive method for kiwifruit quality attribute assessment and maturity identification that combines fluorescence hyperspectral imaging (FHSI) technology and chemometrics. Specifically, first of all, three different spectral data preprocessing methods were adopted, and PLSR was used to evaluate the quality attributes (DMC, firmness, and SSC) of kiwifruit. Next, the differences in accuracy of different models in discriminating kiwifruit maturity were compared, and an ensemble learning model based on LightGBM and GBDT models was constructed. The results indicate that the ensemble learning model outperforms single machine learning models. In addition, the application effects of the 'Convolutional Neural Network'-'Multilayer Perceptron' (CNN-MLP) model under different optimization algorithms were compared. To improve the robustness of the model, an improved whale optimization algorithm (IWOA) was introduced by modifying the acceleration factor. Overall, the IWOA-CNN-MLP model performs the best in discriminating the maturity of kiwifruit, with Accuracytest of 0.916 and Loss of 0.23. In addition, compared with the basic model, the accuracy of the integrated learning model SG-MSC-SEL was improved by about 12%-20 %. The research findings will provide new perspectives for the evaluation of kiwifruit quality and maturity discrimination using FHSI and chemometric methods, thereby promoting further research and applications in this field.


Subject(s)
Actinidia , Fruit , Hyperspectral Imaging , Actinidia/chemistry , Actinidia/growth & development , Hyperspectral Imaging/methods , Fruit/chemistry , Fruit/growth & development , Chemometrics , Neural Networks, Computer , Food Quality , Fluorescence , Quality Control
11.
Food Res Int ; 194: 114940, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39232550

ABSTRACT

Hyperspectral microscope imaging (HMI) technique was employed to assess the changes in physicochemical parameters and microstructure of 'Golden Delicious' apples flesh during storage. Four regions of interest (ROIs), including whole-cell ROI, intercellular space ROI, cytoplasm ROI, and cell wall ROI were investigated to assess their relationships with physicochemical parameters. Different ROIs presented similar vibrational profiles, but with slight differences in spectral intensity, especially in the range of 800-1000 nm. Spectral angle mapper (SAM) was applied to the HMI of apple tissues at different storage stages to clearly show the structural changes of parenchyma cells, while principal component analysis (PCA) could highlight the distribution of sugars, water and pigments in apple flesh at the cellular scale. Simultaneously with the degradation of acid-soluble pectin (ASP), middle lamella dissolution and increased intercellular space were observed using SEM and TEM. Single feature variables were used to construct linear models based on pearson correlation analysis, with R2 of 0.96 for moisture at 982 nm, 0.85 for water-soluble pectin (WSP) at 420 nm, 0.82 for L* at 946 nm, 0.77 for soluble solids content (SSC) at 484 nm, and 0.66 for firmness at 490 nm. This work demonstrated the great potential of HMI technology as a fast, accurate and efficient solution for assessing the quality of 'Golden Delicious' apples.


Subject(s)
Fruit , Hyperspectral Imaging , Malus , Pectins , Malus/chemistry , Fruit/chemistry , Hyperspectral Imaging/methods , Pectins/chemistry , Pectins/analysis , Principal Component Analysis , Microscopy/methods , Food Storage/methods , Microscopy, Electron, Scanning , Cell Wall/chemistry
12.
J Biomed Opt ; 29(9): 093508, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39258259

ABSTRACT

Significance: Histopathological examination of surgical biopsies, such as in glioma and glioblastoma resection, is hindered in current clinical practice by the long time required for the laboratory analysis and pathological screening, typically taking several days or even weeks to be completed. Aim: We propose here a transportable, high-density, spectral scanning-based hyperspectral imaging (HSI) setup, named HyperProbe1, that can provide in situ, fast biochemical analysis, and mapping of fresh surgical tissue samples, right after excision, and without the need for fixing, staining nor compromising the integrity of the tissue properties. Approach: HyperProbe1 is based on spectral scanning via supercontinuum laser illumination filtered with acousto-optic tunable filters. Such methodology allows the user to select any number and type of wavelength bands in the visible and near-infrared range between 510 and 900 nm (up to a maximum of 79) and to reconstruct 3D hypercubes composed of high-resolution (4 to 5 µ m ), widefield images ( 0.9 × 0.9 mm 2 ) of the surgical samples, where each pixel is associated with a complete spectrum. Results: The HyperProbe1 setup is here presented and characterized. The system is applied to 11 fresh surgical biopsies of glioma from routine patients, including different grades of tumor classification. Quantitative analysis of the composition of the tissue is performed via fast spectral unmixing to reconstruct the mapping of major biomarkers, such as oxy-( HbO 2 ) and deoxyhemoglobin (HHb), as well as cytochrome-c-oxidase (CCO). We also provided a preliminary attempt to infer tumor classification based on differences in composition in the samples, suggesting the possibility of using lipid content and differential CCO concentrations to distinguish between lower and higher-grade gliomas. Conclusions: A proof of concept of the performances of HyperProbe1 for quantitative, biochemical mapping of surgical biopsies is demonstrated, paving the way for improving current post-surgical, histopathological practice via non-destructive, in situ streamlined screening of fresh tissue samples in a matter of minutes after excision.


Subject(s)
Brain Neoplasms , Hyperspectral Imaging , Humans , Hyperspectral Imaging/methods , Biopsy , Brain Neoplasms/diagnostic imaging , Brain Neoplasms/pathology , Glioma/diagnostic imaging , Glioma/pathology , Glioblastoma/diagnostic imaging , Glioblastoma/pathology , Equipment Design , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional/methods , Brain/diagnostic imaging , Brain/pathology
13.
J Biomed Opt ; 29(9): 093506, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39139794

ABSTRACT

Significance: Minimally invasive surgery (MIS) has shown vast improvement over open surgery by reducing post-operative stays, intraoperative blood loss, and infection rates. However, in spite of these improvements, there are still prevalent issues surrounding MIS that may be addressed through hyperspectral imaging (HSI). We present a laparoscopic HSI system to further advance the field of MIS. Aim: We present an imaging system that integrates high-speed HSI technology with a clinical laparoscopic setup and validate the system's accuracy and functionality. Different configurations that cover the visible (VIS) to near-infrared (NIR) range of electromagnetism are assessed by gauging the spectral fidelity and spatial resolution of each hyperspectral camera. Approach: Standard Spectralon reflectance tiles were used to provide ground truth spectral footprints to compare with those acquired by our system using the root mean squared error (RMSE). Demosaicing techniques were investigated and used to measure and improve spatial resolution, which was assessed with a USAF resolution test target. A perception-based image quality evaluator was used to assess the demosaicing techniques we developed. Two configurations of the system were developed for evaluation. The functionality of the system was investigated in a phantom study and by imaging ex vivo tissues. Results: Multiple configurations of our system were tested, each covering different spectral ranges, including VIS (460 to 600 nm), red/NIR (RNIR) (610 to 850 nm), and NIR (665 to 950 nm). Each configuration is capable of achieving real-time imaging speeds of up to 20 frames per second. RMSE values of 3.51 ± 2.03 % , 3.43 ± 0.84 % , and 3.47% were achieved for the VIS, RNIR, and NIR systems, respectively. We obtained sub-millimeter resolution using our demosaicing techniques. Conclusions: We developed and validated a high-speed hyperspectral laparoscopic imaging system. The HSI system can be used as an intraoperative imaging tool for tissue classification during laparoscopic surgery.


Subject(s)
Equipment Design , Hyperspectral Imaging , Laparoscopy , Laparoscopy/methods , Hyperspectral Imaging/methods , Animals , Humans , Phantoms, Imaging , Image Processing, Computer-Assisted/methods , Reproducibility of Results , Minimally Invasive Surgical Procedures/instrumentation , Minimally Invasive Surgical Procedures/methods , Swine
14.
Sci Rep ; 14(1): 19340, 2024 08 20.
Article in English | MEDLINE | ID: mdl-39164367

ABSTRACT

The quantitative nature of fusarium head blight (FHB) resistance requires further exploration of the wheat genome to identify regions conferring resistance. In this study, we explored the application of hyperspectral imaging of Fusarium-infected wheat kernels and identified regions of the wheat genome contributing significantly to the accumulation of Deoxynivalenol (DON) mycotoxin. Strong correlations were identified between hyperspectral reflectance values for 204 wavebands in the 397-673 nm range and DON mycotoxin. Dimensionality reduction using principal components was performed for all 204 wavebands and 38 sliding windows across the range of wavebands. The first principal component (PC1) of all 204 wavebands explained 70% of the total variation in waveband reflectance values and was highly correlated with DON mycotoxin. PC1 was used as a phenotype in a genome wide association study and a large effect QTL on chromosome 2D was identified for PC1 of all wavebands as well as nearly all 38 sliding windows. The allele contributing variation in PC1 values also led to a substantial reduction in DON. The 2D polymorphism affecting DON levels localized to the exon of TraesCS2D02G524600 which is upregulated in wheat spike and rachis tissues during FHB infection. This work demonstrates the value of hyperspectral imaging as a correlated trait for investigating the genetic basis of resistance and developing wheat varieties with enhanced resistance to FHB.


Subject(s)
Fusarium , Genome-Wide Association Study , Plant Diseases , Quantitative Trait Loci , Trichothecenes , Triticum , Triticum/microbiology , Triticum/genetics , Plant Diseases/microbiology , Plant Diseases/genetics , Phenotype , Genome, Plant , Disease Resistance/genetics , Hyperspectral Imaging/methods
15.
PLoS One ; 19(8): e0308789, 2024.
Article in English | MEDLINE | ID: mdl-39197053

ABSTRACT

Addressing the challenges in effectively extracting multi-scale features and preserving pose information during hyperspectral image (HSI) classification, a Multi-Scale Depthwise Separable Capsule Network (MDSC-Net) is proposed in this article for HSI classification. Initially, hierarchical features are extracted by MDSC-Net through the employment of parallel multi-scale convolutional kernels, while computational complexity is reduced via depthwise separable convolutions, thus reducing the overall computational load and achieving efficient feature extraction. Subsequently, to enhance the translational invariance of features and reduce the loss of pose information, features of various scales are processed in parallel by independent capsule networks, with improvements in max pooling achieved through dynamic routing. Lastly, features of different scales are concatenated and integrated through the concatenate operation, thereby facilitating precise analysis of multi-level information in the hyperspectral image classification process. Experimental comparisons demonstrate that MDSC-Net achieves average accuracies of 94%, 98%, and 99% on the Kennedy Space Center, University of Pavia, and Salinas datasets, respectively, indicating a significant performance advantage over recent HSI classification models and validating the effectiveness of the proposed model.


Subject(s)
Hyperspectral Imaging , Hyperspectral Imaging/methods , Algorithms , Image Processing, Computer-Assisted/methods , Neural Networks, Computer , Humans
16.
Food Chem ; 461: 140651, 2024 Dec 15.
Article in English | MEDLINE | ID: mdl-39154465

ABSTRACT

High-throughput and low-cost quantification of the nutrient content in crop grains is crucial for food processing and nutritional research. However, traditional methods are time-consuming and destructive. A high-throughput and low-cost method of quantification of wheat nutrients with VIS-NIR (400-1700 nm) hyperspectral imaging is proposed in this study. Stepwise linear regression (SLR) was used to predict hundreds of nutrients accurately (R2 > 0.6); results improved when the hyperspectral data was processed with the first derivative. Knockout materials were also used to verify their practical application value. Various nutrients' characteristic wavelengths were mainly concentrated in the visible regions of 400-500 nm and 900-1000 nm. Finally, we proposed an improved pix2pix conditional generative network model to visualize the nutrients distribution and showed better results compared with the original. This research highlights the potential of hyperspectral technology in high-throughput and non-destructive determination and visualization of grain nutrients with deep learning.


Subject(s)
Deep Learning , Hyperspectral Imaging , Nutrients , Spectroscopy, Near-Infrared , Triticum , Triticum/chemistry , Hyperspectral Imaging/methods , Spectroscopy, Near-Infrared/methods , Nutrients/analysis , Edible Grain/chemistry , High-Throughput Screening Assays/methods , Nutritive Value , Seeds/chemistry
17.
Food Chem ; 461: 140903, 2024 Dec 15.
Article in English | MEDLINE | ID: mdl-39178543

ABSTRACT

Lycium barbarum L. (L. barbarum) is renowned worldwide for its nutritional and medicinal benefits. Rapid and accurate identification of L.barbarum's geographic origin is essential because its nutritional content, medicinal efficacy, and market price significantly vary by region. This study proposes an innovative method combining hyperspectral imaging (HSI), nuclear magnetic resonance (NMR), and an improved ResNet-34 deep learning model to accurately identify the geographical origin and geographical indication (GI) markers of L.barbarum. The deep learning model achieved a 95.63% accuracy, surpassed traditional methods by 6.26% and reduced runtime by 29.9% through SHapley Additive exPlanations (SHAP)-based feature selection. Pearson correlation analysis between GI markers and HSI characteristic wavelengths enhanced the interpretability of HSI data and further reduced runtime by 33.99%. This work lays the foundation for portable multispectral devices, offering a rapid, accurate, and cost-effective solution for quality assurance and market regulation of L.barbarum products.


Subject(s)
Deep Learning , Lycium , Magnetic Resonance Spectroscopy , Lycium/chemistry , Magnetic Resonance Spectroscopy/methods , Hyperspectral Imaging/methods , Geography
18.
Food Chem ; 461: 140932, 2024 Dec 15.
Article in English | MEDLINE | ID: mdl-39197321

ABSTRACT

Predicting the oil content of individual corn kernels using hyperspectral imaging and ML offers the advantages of being rapid and non-destructive. However, traditional methods rely on expert experience for setting parameters. In response to these limitations, this study has designed an innovative multi-stage grid search technique, tailored to the characteristics of spectral data. Initially, the study automatically screening the best model from up to 504 algorithm combinations. Subsequently, multi-stage grid search is utilized for improving precision. We collected 270 kernel samples from different parts of the ear from 15 high oil and regular corn materials, with oil contents ranging from 1.4% to 13.1%. Experimental results show that the combinations SG + NONE+KS + PLSR(R2: 0.8570) and MA + LAR+Random+MLR(R2: 0.8523) performed optimally. After parameter optimization, their R2 values increased to 0.9045 and 0.8730, respectively. Additionally, the ACNNR model achieved an R2 of 0.8878 and an RMSE of 0.2243. The improved algorithm significantly outperforms traditional methods and ACNNR model in prediction accuracy and adaptability, offering an effective method for field applications.


Subject(s)
Algorithms , Spectroscopy, Near-Infrared , Zea mays , Zea mays/chemistry , Spectroscopy, Near-Infrared/methods , Corn Oil/chemistry , Hyperspectral Imaging/methods , Seeds/chemistry , Plant Oils/chemistry
19.
Environ Sci Technol ; 58(37): 16488-16496, 2024 Sep 17.
Article in English | MEDLINE | ID: mdl-39214532

ABSTRACT

Methods used to monitor anaerobic digestion (AD) indicators are commonly based on wet chemical analyses, which consume time and materials. In addition, physical disturbances, such as floating granules (FGs), must be monitored manually. In this study, we present an eco-friendly, high-throughput methodology that uses near-infrared hyperspectral imaging (NIR-HSI) to build a machine-learning model for characterizing the chemical composition of the digestate and a target detection algorithm for identifying FGs. A total of 732 digestate samples were used to develop and validate a model for calculating total nitrogen (TN), total organic carbon (TOC), total ammonia nitrogen (TAN), and chemical oxygen demand (COD), which are the chemical indicators of responses to disturbances in the AD process. Among these parameters, good model performance was obtained using the dried digestates data set, where the coefficient of determination (R2test) and the root-mean-square error (RMSEtest) were 0.82 and 1090 mg/L for TOC, and 0.86 and 690 mg/L for TN, respectively. Furthermore, the unique spectral features of the FGs in reactors with a lipid-rich substrate meant that they could also be identified by the HSI system. Based on these findings, developing NIR-HSI solutions to monitor the digestate properties in AD plants has great potential for industrial application.


Subject(s)
Hyperspectral Imaging , Anaerobiosis , Hyperspectral Imaging/methods , Nitrogen , Biological Oxygen Demand Analysis
20.
Spectrochim Acta A Mol Biomol Spectrosc ; 323: 124912, 2024 Dec 15.
Article in English | MEDLINE | ID: mdl-39142263

ABSTRACT

In recent years, hyperspectral imaging combined with machine learning techniques has garnered significant attention for its potential in assessing fruit maturity. This study proposes a method for predicting strawberry fruit maturity based on the harvest time. The main features of this study are as follows. 1) Selection of wavelength band associated with strawberry growth season; 2) Extraction of efficient parameters to predict strawberry maturity 3) Prediction of internal quality attributes of strawberries using extracted parameters. In this study, experts cultivated strawberries in a controlled environment and performed hyperspectral measurements and organic analyses on the fruit with minimal time delay to facilitate accurate modeling. Data augmentation techniques through cross-validation and interpolation were effective in improving model performance. The four parameters included in the model and the cumulative value of the model were available for quality prediction as additional parameters. Among these five parameter candidates, two parameters with linearity were finally identified. The predictive outcomes for firmness, soluble solids content, acidity, and anthocyanin levels in strawberry fruit, based on the two identified parameters, are as follows: The first parameter, ps, demonstrated RMSE performances of 1.0 N, 2.3 %, 0.1 %, and 2.0 mg per 100 g fresh fruit for firmness, soluble solids content, acidity, and anthocyanin, respectively. The second parameter, p3, showed RMSE performances of 0.6 N, 1.2 %, 0.1 %, and 1.8 mg per 100 g fresh fruit, respectively. The proposed non-destructive analysis method shows the potential to overcome the challenges associated with destructive testing methods for assessing certain internal qualities of strawberry fruit.


Subject(s)
Fragaria , Fruit , Hyperspectral Imaging , Fragaria/chemistry , Fragaria/growth & development , Fruit/chemistry , Hyperspectral Imaging/methods , Anthocyanins/analysis
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