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1.
Nature ; 616(7955): 152-158, 2023 04.
Article in English | MEDLINE | ID: mdl-36991121

ABSTRACT

Non-enveloped viruses require cell lysis to release new virions from infected cells, suggesting that these viruses require mechanisms to induce cell death. Noroviruses are one such group of viruses, but there is no known mechanism that causes norovirus infection-triggered cell death and lysis1-3. Here we identify a molecular mechanism of norovirus-induced cell death. We found that the norovirus-encoded NTPase NS3 contains an N-terminal four-helix bundle domain homologous to the membrane-disruption domain of the pseudokinase mixed lineage kinase domain-like (MLKL). NS3 has a mitochondrial localization signal and thus induces cell death by targeting mitochondria. Full-length NS3 and an N-terminal fragment of the protein bound the mitochondrial membrane lipid cardiolipin, permeabilized the mitochondrial membrane and induced mitochondrial dysfunction. Both the N-terminal region and the mitochondrial localization motif of NS3 were essential for cell death, viral egress from cells and viral replication in mice. These findings suggest that noroviruses have acquired a host MLKL-like pore-forming domain to facilitate viral egress by inducing mitochondrial dysfunction.


Subject(s)
Cell Death , Norovirus , Nucleoside-Triphosphatase , Protein Kinases , Viral Proteins , Animals , Mice , Mitochondria/metabolism , Mitochondria/pathology , Norovirus/enzymology , Norovirus/growth & development , Norovirus/pathogenicity , Norovirus/physiology , Protein Kinases/chemistry , Virus Replication , Viral Proteins/chemistry , Viral Proteins/metabolism , Nucleoside-Triphosphatase/chemistry , Nucleoside-Triphosphatase/metabolism , Protein Sorting Signals , Cardiolipins/metabolism , Mitochondrial Membranes/chemistry , Mitochondrial Membranes/metabolism
2.
J Gen Virol ; 103(1)2022 01.
Article in English | MEDLINE | ID: mdl-35077345

ABSTRACT

Norovirus is the leading cause of epidemic and endemic acute gastroenteritis worldwide and the most frequent cause of foodborne illness in the United States. There is no specific treatment for norovirus infections and therapeutic interventions are based on alleviating symptoms and limiting viral transmission. The immune response to norovirus is not completely understood and mechanistic studies have been hindered by lack of a robust cell culture system. In recent years, the human intestinal enteroid/human intestinal organoid system (HIE/HIO) has enabled successful human norovirus replication. Cells derived from HIE have also successfully been subjected to genetic manipulation using viral vectors as well as CRISPR/Cas9 technology, thereby allowing studies to identify antiviral signaling pathways important in controlling norovirus infection. RNA sequencing using HIE cells has been used to investigate the transcriptional landscape during norovirus infection and to identify antiviral genes important in infection. Other cell culture platforms such as the microfluidics-based gut-on-chip technology in combination with the HIE/HIO system also have the potential to address fundamental questions on innate immunity to human norovirus. In this review, we highlight the recent advances in understanding the innate immune response to human norovirus infections in the HIE system, including the application of advanced molecular technologies that have become available in recent years such as the CRISPR/Cas9 and RNA sequencing, as well as the potential application of single cell transcriptomics, viral proteomics, and gut-on-a-chip technology to further elucidate innate immunity to norovirus.


Subject(s)
Caliciviridae Infections/immunology , Gastroenteritis/immunology , Intestines/virology , Organoids/immunology , Gastroenteritis/virology , Humans , Immunity, Innate , Intestines/immunology , Models, Biological , Norovirus/pathogenicity , Norovirus/physiology , Organoids/virology , Sequence Analysis, RNA , Virus Replication
3.
Int J Mol Sci ; 22(24)2021 Dec 15.
Article in English | MEDLINE | ID: mdl-34948268

ABSTRACT

Rotavirus (RV) and norovirus (NoV) are the leading causes of acute gastroenteritis (AGE) worldwide. Several studies have demonstrated that histo-blood group antigens (HBGAs) have a role in NoV and RV infections since their presence on the gut epithelial surfaces is essential for the susceptibility to many NoV and RV genotypes. Polymorphisms in genes that code for enzymes required for HBGAs synthesis lead to secretor or non-secretor and Lewis positive or Lewis negative individuals. While secretor individuals appear to be more susceptible to RV infections, regarding NoVs infections, there are too many discrepancies that prevent the ability to draw conclusions. A second factor that influences enteric viral infections is the gut microbiota of the host. In vitro and animal studies have determined that the gut microbiota limits, but in some cases enhances enteric viral infection. The ways that microbiota can enhance NoV or RV infection include virion stabilization and promotion of virus attachment to host cells, whereas experiments with microbiota-depleted and germ-free animals point to immunoregulation as the mechanism by which the microbiota restrict infection. Human trials with live, attenuated RV vaccines and analysis of the microbiota in responder and non-responder individuals also allowed the identification of bacterial taxa linked to vaccine efficacy. As more information is gained on the complex relationships that are established between the host (glycobiology and immune system), the gut microbiota and intestinal viruses, new avenues will open for the development of novel anti-NoV and anti-RV therapies.


Subject(s)
Caliciviridae Infections/microbiology , Rotavirus Infections/microbiology , Animals , Blood Group Antigens/immunology , Blood Group Antigens/metabolism , Caliciviridae Infections/immunology , Caliciviridae Infections/virology , Gastroenteritis/microbiology , Gastrointestinal Microbiome/physiology , Genotype , Glycomics , Humans , Immunity , Norovirus/immunology , Norovirus/pathogenicity , Rotavirus/immunology , Rotavirus/pathogenicity , Rotavirus Infections/immunology , Rotavirus Infections/virology , Vaccine Efficacy , Viral Vaccines
4.
PLoS One ; 16(11): e0258680, 2021.
Article in English | MEDLINE | ID: mdl-34731182

ABSTRACT

OBJECTIVE: To evaluate the pathogenicity of a broad range of 11 possible gastroenteritis viruses, by means of statistical relationships with cases vs. controls, or Ct-values, in order to establish the most appropriate diagnostic panel for our general practitioner (GP) patients in the Netherlands (2010-2012). METHODS: Archived stool samples from 1340 cases and 1100 controls were retested using internally controlled multiplex real-time PCRs for putative pathogenic gastroenteritis viruses: adenovirus, astrovirus, bocavirus, enterovirus, norovirus GI and GII, human parechovirus, rotavirus, salivirus, sapovirus, and torovirus. RESULTS: The prevalence of any virus in symptomatic cases and asymptomatic controls was 16.6% (223/1340) and 10.2% (112/1100), respectively. Prevalence of astrovirus (adjusted odds ratio (aOR) 10.37; 95% confidence interval (CI) 1.34-80.06) and norovirus GII (aOR 3.10; CI 1.62-5.92) was significantly higher in cases versus controls. Rotavirus was encountered only in cases. We did not find torovirus and there was no statistically significant relationship with cases for salivirus (aOR 1,67; (CI) 0.43-6.54)), adenovirus non-group F (aOR 1.20; CI 0.75-1.91), bocavirus (aOR 0.85; CI 0.05-13.64), enterovirus (aOR 0.83; CI 0.50-1.37), human parechovirus (aOR 1.61; CI 0.54-4.77) and sapovirus (aOR 1.15; CI 0.67-1.98). Though adenovirus group F (aOR 6.37; CI 0.80-50.92) and norovirus GI (aOR 2.22, CI: 0.79-6.23) are known enteropathogenic viruses and were more prevalent in cases than in controls, this did not reach significance in this study. The Ct value did not discriminate between carriage and disease in PCR-positive subjects. CONCLUSIONS: In our population, diagnostic gastroenteritis tests should screen for adenovirus group F, astrovirus, noroviruses GI and GII, and rotavirus. Case-control studies as ours are lacking and should also be carried out in populations from other epidemiological backgrounds.


Subject(s)
Enterovirus Infections/diagnosis , Feces/virology , Gastroenteritis/diagnosis , Adenoviridae/genetics , Adenoviridae/isolation & purification , Adenoviridae/pathogenicity , Bocavirus/genetics , Bocavirus/isolation & purification , Bocavirus/pathogenicity , Child, Preschool , Enterovirus Infections/genetics , Enterovirus Infections/pathology , Enterovirus Infections/virology , Female , Gastroenteritis/genetics , Gastroenteritis/pathology , Gastroenteritis/virology , General Practitioners , Humans , Infant , Male , Norovirus/genetics , Norovirus/isolation & purification , Norovirus/pathogenicity , Patients , Rotavirus/genetics , Rotavirus/isolation & purification , Rotavirus/pathogenicity , Sapovirus/genetics , Sapovirus/isolation & purification , Sapovirus/pathogenicity
5.
Viruses ; 13(10)2021 09 29.
Article in English | MEDLINE | ID: mdl-34696390

ABSTRACT

Globally and in all age groups, noroviruses are a main cause of gastroenteritis. To assess their local epidemiology and genetic diversity, stool samples of 7509 inpatients with gastrointestinal complaints from all age groups were analyzed. After detection of norovirus genogroup I and II RNA by real-time RT-PCR, viral capsids were genotyped by partial nucleic acid sequencing. In the case of GII.2 strains, polymerase genotypes were also assessed. Between October 2013 and September 2017, presence of norovirus RNA was shown in 611 samples (8.1%), of which 610 (99.8%) were typed successfully. Norovirus positivity rate was higher in patients aged below five years (14.8%) than in older patients (5.7%). Among the 611 norovirus positive samples, GII.4 (56.6%) strains prevailed, followed by GII.6 (11.3%), GII.3 (11.0%) and GII.2 (9.5%). The most common genogroup I (GGI) genotype was GI.3 (3.6%). In addition, rare genotypes such as GII.13, GII.14 and GII.26 were detected. Interestingly, GII.3 infections were most common in children under the age of five years. Assessment of polymerase genotypes in GII.2 viruses showed a shift from P2 to P16, with higher diversity in P2 sequences. The varying distribution of norovirus genotypes depending on season, age and setting of infection highlights the importance of frequent genotyping as a basis for vaccine development and needful adjustments.


Subject(s)
Caliciviridae Infections/epidemiology , Genetic Variation , Genotype , Norovirus/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Feces/virology , Female , Gastroenteritis/epidemiology , Gastroenteritis/virology , Germany/epidemiology , Humans , Infant , Infant, Newborn , Male , Middle Aged , Norovirus/classification , Norovirus/pathogenicity , Phylogeny , Prevalence , RNA, Viral/genetics , Young Adult
6.
J Gen Virol ; 102(10)2021 10.
Article in English | MEDLINE | ID: mdl-34698626

ABSTRACT

Human noroviruses (HuNoVs) are increasingly becoming the main cause of transmissible gastroenteritis worldwide, with hundreds of thousands of deaths recorded annually. Yet, decades after their discovery, there is still no effective treatment or vaccine. Efforts aimed at developing vaccines or treatment will benefit from a greater understanding of norovirus-host interactions, including the host response to infection. In this review, we provide a concise overview of the evidence establishing the significance of type I and type III interferon (IFN) responses in the restriction of noroviruses. We also critically examine our current understanding of the molecular mechanisms of IFN induction in norovirus-infected cells, and outline the diverse strategies deployed by noroviruses to supress and/or avoid host IFN responses. It is our hope that this review will facilitate further discussion and increase interest in this area.


Subject(s)
Caliciviridae Infections/immunology , Caliciviridae Infections/virology , Interferons/physiology , Norovirus/immunology , Norovirus/pathogenicity , Animals , Cell Line , Humans , Immune Evasion , Immunity, Innate , Interferons/biosynthesis , Viral Proteins/metabolism , Virus Replication
7.
Viruses ; 13(9)2021 08 30.
Article in English | MEDLINE | ID: mdl-34578304

ABSTRACT

Noroviruses are considered an important cause of acute gastroenteritis (AGE) across all age groups. Here, we investigated the incidence of norovirus, genotypes circulation, and norovirus shedding in AGE stool samples from outpatients in Brazil. During a two-year period, 1546 AGE stool samples from ten Brazilian states were analyzed by RT-qPCR to detect and quantify GI and GII noroviruses. Positive samples were genotyped by dual sequencing using the ORF1/2 junction region. Overall, we detected norovirus in 32.1% of samples, with a massive predominance of GII viruses (89.1%). We also observed a significant difference between the median viral load of norovirus GI (3.4×105 GC/g of stool) and GII (1.9×107 GC/g). The most affected age group was children aged between 6 and 24 m old, and norovirus infection was detected throughout the year without marked seasonality. Phylogenetic analysis of partial RdRp and VP1 regions identified six and 11 genotype combinations of GI and GII, respectively. GII.4 Sydney[P16] was by far the predominant genotype (47.6%), followed by GII.2[P16], GII.4 Sydney[P31], and GII.6[P7]. We detected, for the first time in Brazil, the intergenogroup recombinant genotype GIX.1[GII.P15]. Our study contributes to the knowledge of norovirus genotypes circulation at the national level, reinforcing the importance of molecular surveillance programs for future vaccine designs.


Subject(s)
Caliciviridae Infections/epidemiology , Caliciviridae Infections/virology , Norovirus/genetics , Norovirus/pathogenicity , Phylogeny , Adolescent , Adult , Brazil/epidemiology , Child , Child, Preschool , Feces/virology , Female , Gastroenteritis/virology , Genetic Variation , Genotype , Humans , Infant , Infant, Newborn , Male , Middle Aged , Norovirus/classification , RNA, Viral/genetics , Recombination, Genetic , Young Adult
8.
Anal Bioanal Chem ; 413(29): 7157-7178, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34490501

ABSTRACT

The objective of this critical review is to provide an overview of how emerging bioanalytical techniques are expanding our understanding of the complex physicochemical nature of virus interactions with host cell surfaces. Herein, selected model viruses representing both non-enveloped (simian virus 40 and human norovirus) and enveloped (influenza A virus, human herpes simplex virus, and human immunodeficiency virus type 1) viruses are highlighted. The technologies covered utilize a wide range of cell membrane mimics, from supported lipid bilayers (SLBs) containing a single purified host membrane component to SLBs derived from the plasma membrane of a target cell, which can be compared with live-cell experiments to better understand the role of individual interaction pairs in virus attachment and entry. These platforms are used to quantify binding strengths, residence times, diffusion characteristics, and binding kinetics down to the single virus particle and single receptor, and even to provide assessments of multivalent interactions. The technologies covered herein are surface plasmon resonance (SPR), quartz crystal microbalance with dissipation (QCM-D), dynamic force spectroscopy (DFS), total internal reflection fluorescence (TIRF) microscopy combined with equilibrium fluctuation analysis (EFA) and single particle tracking (SPT), and finally confocal microscopy using multi-labeling techniques to visualize entry of individual virus particles in live cells. Considering the growing scientific and societal needs for untangling, and interfering with, the complex mechanisms of virus binding and entry, we hope that this review will stimulate the community to implement these emerging tools and strategies in conjunction with more traditional methods. The gained knowledge will not only contribute to a better understanding of the virus biology, but may also facilitate the design of effective inhibitors to block virus entry.


Subject(s)
Cell Membrane/virology , Host-Pathogen Interactions/physiology , Molecular Biology/methods , Cell Membrane/chemistry , Cell Membrane/metabolism , Glycosaminoglycans/metabolism , HIV-1/pathogenicity , HIV-1/physiology , Herpesvirus 1, Human/pathogenicity , Herpesvirus 1, Human/physiology , Humans , Influenza A virus/pathogenicity , Influenza A virus/physiology , Lipid Bilayers/chemistry , Lipid Bilayers/metabolism , N-Acetylneuraminic Acid/metabolism , Norovirus/pathogenicity , Norovirus/physiology , Polysaccharides/metabolism , Simian virus 40/pathogenicity , Simian virus 40/physiology , Virus Internalization
9.
J Gen Virol ; 102(9)2021 09.
Article in English | MEDLINE | ID: mdl-34491891

ABSTRACT

Murine norovirus (MNV) is widely used as a model for studying norovirus biology. While MNV isolates vary in their pathogenesis, infection of immunocompetent mice mostly results in persistent infection. The ability of a virus to establish a persistent infection is dependent on its ability to subvert or avoid the host immune response. Previously, we described the identification and characterization of virulence factor 1 (VF1) in MNV, and demonstrated its role as an innate immune antagonist. Here, we explore the role of VF1 during persistent MNV infection in an immunocompetent host. Using reverse genetics, we generated MNV-3 viruses carrying a single or a triple termination codon inserted in the VF1 ORF. VF1-deleted MNV-3 replicated to comparable levels to the wildtype virus in tissue culture. Comparative studies between MNV-3 and an acute MNV-1 strain show that MNV-3 VF1 exerts the same functions as MNV-1 VF1, but with reduced potency. C57BL/6 mice infected with VF1-deleted MNV-3 showed significantly reduced replication kinetics during the acute phase of the infection, but viral loads rapidly reached the levels seen in mice infected with wildtype virus after phenotypic restoration of VF1 expression. Infection with an MNV-3 mutant that had three termination codons inserted into VF1, in which reversion was suppressed, resulted in consistently lower replication throughout a 3 month persistent infection in mice, suggesting a role for VF1 in viral fitness in vivo. Our results indicate that VF1 expressed by a persistent strain of MNV also functions to antagonize the innate response to infection. We found that VF1 is not essential for viral persistence, but instead contributes to viral fitness in mice. These data fit with the hypothesis that noroviruses utilize multiple mechanisms to avoid and/or control the host response to infection and that VF1 is just one component of this.


Subject(s)
Caliciviridae Infections/virology , Norovirus/pathogenicity , Viral Proteins/metabolism , Virulence Factors/metabolism , Animals , Apoptosis , Caliciviridae Infections/immunology , Cell Line , Immunity, Innate , Interferon-beta/biosynthesis , Male , Mice , Mice, Inbred C57BL , Norovirus/genetics , Norovirus/physiology , Viral Proteins/genetics , Virulence , Virulence Factors/genetics , Virus Replication , Virus Shedding
10.
J Virol ; 95(20): e0113421, 2021 09 27.
Article in English | MEDLINE | ID: mdl-34346771

ABSTRACT

Murine norovirus (MNV) infection results in a late translation shutoff that is proposed to contribute to the attenuated and delayed innate immune response observed both in vitro and in vivo. Recently, we further demonstrated the activation of the α subunit of eukaryotic initiation factor 2 (eIF2α) kinase GCN2 during MNV infection, which has been previously linked to immunomodulation and resistance to inflammatory signaling during metabolic stress. While viral infection is usually associated with activation of double-stranded RNA (dsRNA) binding pattern recognition receptor PKR, we hypothesized that the establishment of a metabolic stress in infected cells is a proviral event, exploited by MNV to promote replication through weakening the activation of the innate immune response. In this study, we used multi-omics approaches to characterize cellular responses during MNV replication. We demonstrate the activation of pathways related to the integrated stress response, a known driver of anti-inflammatory phenotypes in macrophages. In particular, MNV infection causes an amino acid imbalance that is associated with GCN2 and ATF2 signaling. Importantly, this reprogramming lacks the features of a typical innate immune response, with the ATF/CHOP target GDF15 contributing to the lack of antiviral responses. We propose that MNV-induced metabolic stress supports the establishment of host tolerance to viral replication and propagation. IMPORTANCE During viral infection, host defenses are typically characterized by the secretion of proinflammatory autocrine and paracrine cytokines, potentiation of the interferon (IFN) response, and induction of the antiviral response via activation of JAK and Stat signaling. To avoid these and propagate, viruses have evolved strategies to evade or counteract host sensing. In this study, we demonstrate that murine norovirus controls the antiviral response by activating a metabolic stress response that activates the amino acid response and impairs inflammatory signaling. This highlights novel tools in the viral countermeasures arsenal and demonstrates the importance of the currently poorly understood metabolic reprogramming occurring during viral infections.


Subject(s)
Caliciviridae Infections/immunology , Macrophages/virology , Activating Transcription Factor 2/metabolism , Animals , Antiviral Agents , Caliciviridae Infections/metabolism , Cell Line , Eukaryotic Initiation Factor-2/metabolism , Immunity, Innate/immunology , Inflammation/immunology , Interferons , Macrophages/immunology , Mice , Norovirus/pathogenicity , Protein Serine-Threonine Kinases/metabolism , RAW 264.7 Cells , RNA, Double-Stranded/genetics , Signal Transduction/immunology , Viral Nonstructural Proteins/metabolism , Virus Replication/genetics
11.
Pediatr Infect Dis J ; 40(9): 846-851, 2021 09 01.
Article in English | MEDLINE | ID: mdl-34397778

ABSTRACT

Histo-blood group antigen contains oligosaccharides that serve as receptors for norovirus (NoV) and rotavirus (RV). The receptors are only present on the surface of intestinal mucosal epithelial cells of secretors; therefore, secretors are susceptible to NoV and RV diarrhea and nonsecretors are resistant. The prevalence of secretors in different countries varies between 50% and 90%. Secretor rates evolved in response to environmental pressures such as infectious diseases.


Subject(s)
Blood Group Antigens/genetics , Diarrhea/virology , Gastroenteritis/epidemiology , Genetic Predisposition to Disease , Norovirus/pathogenicity , Rotavirus/pathogenicity , Blood Group Antigens/classification , Caliciviridae Infections/epidemiology , Caliciviridae Infections/etiology , Caliciviridae Infections/genetics , Diarrhea/epidemiology , Diarrhea/etiology , Diarrhea/genetics , Gastroenteritis/genetics , Gastroenteritis/virology , Genotype , Humans , Rotavirus Infections/epidemiology , Rotavirus Infections/etiology , Rotavirus Infections/genetics , Viral Vaccines/immunology
12.
Appl Environ Microbiol ; 87(18): e0079021, 2021 08 26.
Article in English | MEDLINE | ID: mdl-34232705

ABSTRACT

Human noroviruses (HuNoVs) are important foodborne pathogens causing acute gastroenteritis. Oysters are an important vehicle for the transmission of HuNoVs. Histo-blood group antigen (HBGA)-like substances are considered the primary ligands for bioaccumulation of HuNoVs in oyster tissues. In this study, proteinaceous ligands for specific binding of HuNoVs were mined from oyster tissues using a bacterial cell surface display system. The macromolecular target was captured and identified in proteomic analysis. The distribution of viral particles, oyster heat shock protein 70 (oHSP 70), and type A HBGA (positive control) in oyster tissue was investigated by multiplex immunofluorescence assays after artificial contamination with HuNoVs (GII.4). Our results demonstrated that oHSP 70 is a candidate vital ligand for specific binding of HuNoVs in oyster tissues. In addition, P proteins (GI.1 and GII.4) and viral particles (GI.1 and GII.4) were captured by recombinant oHSP 70 in an enzyme-linked immunosorbent assay with a sample signal/negative signal of 7.8, 6.3, 17.0, and 8.8, respectively. The findings suggested that oHSP 70 plays an important role in the binding of these foodborne viruses. IMPORTANCE Human noroviruses (HuNoVs) are the most important pathogen for nonbacterial epidemic gastroenteritis cases. Foodborne transmission plays an important role in HuNoVs infection. Oysters, filter-feeding epibenthic bivalves, can be contaminated by fecal discharge in harvest water. A new proteinaceous ligand for HuNoVs other than HBGA is identified in oyster tissues. The significance of our research is in identifying and verifying the ligands in oyster tissues for HuNoV binding. Our data will allow a better understanding of HuNoV attachment in and transmission by oysters, leading to the control of undesired foodborne disease.


Subject(s)
HSP70 Heat-Shock Proteins/metabolism , Norovirus/pathogenicity , Ostreidae/virology , Animals , Disease Transmission, Infectious , Food Contamination , Foodborne Diseases , Gastroenteritis , Host Microbial Interactions , Humans , Ligands , Ostreidae/metabolism , Protein Binding , Virulence
13.
PLoS One ; 16(4): e0249888, 2021.
Article in English | MEDLINE | ID: mdl-33831124

ABSTRACT

Diarrhoea remains a major cause of childhood morbidity and mortality worldwide. This study aimed to monitor the aetiology of acute diarrhoea in children in Shanghai. Paediatric outpatients with acute diarrhoea were enrolled in the study from Jan 2015 to Dec 2018. Faecal samples were collected for testing. Enteric bacteria were identified and typed by culture and serotyping, respectively. Enteric viruses were identified by real-time PCR. Enteric pathogens were identified in 1572 (58.4%) of the 2692 enrolled children with acute diarrhoea. Viruses were detected more frequently than bacteria (41.3% versus 25.0%). Nontyphoidal Salmonella spp. (NTS) was the most common (10.3%) bacteria isolated, followed by enteropathogenic Escherichia coli (EPEC) (6.5%), enteroaggregative Escherichia coli (EAEC) (6.2%), Campylobacter spp. (3.6%), enterotoxigenic Escherichia coli (ETEC) (1.1%), Shigella spp. (0.2%), and enterohemorrhagic Escherichia coli (EHEC) (0.1%). Rotavirus was the most common (16.0%) virus detected, followed by norovirus (15.5%), adenovirus (7.2%), sapovirus (3.0%) and astrovirus (2.7%). Rotavirus, norovirus and NTS were the major pathogens responsible for diarrhoea in Shanghainese children. Improving uptake of the rotavirus vaccine and strengthening foodborne-pathogen prevention will aid in reducing the burden of diarrhoeal disease in children in Shanghai.


Subject(s)
Diarrhea/microbiology , Campylobacter/pathogenicity , Child , Child, Preschool , China , Diarrhea/epidemiology , Diarrhea/virology , Enterotoxigenic Escherichia coli/pathogenicity , Female , Humans , Infant , Infant, Newborn , Male , Norovirus/pathogenicity , Rotavirus/pathogenicity , Salmonella/pathogenicity
14.
PLoS Pathog ; 17(3): e1009402, 2021 03.
Article in English | MEDLINE | ID: mdl-33705489

ABSTRACT

Interferons (IFNs) are key controllers of viral replication, with intact IFN responses suppressing virus growth and spread. Using the murine norovirus (MNoV) system, we show that IFNs exert selective pressure to limit the pathogenic evolutionary potential of this enteric virus. In animals lacking type I IFN signaling, the nonlethal MNoV strain CR6 rapidly acquired enhanced virulence via conversion of a single nucleotide. This nucleotide change resulted in amino acid substitution F514I in the viral capsid, which led to >10,000-fold higher replication in systemic organs including the brain. Pathogenicity was mediated by enhanced recruitment and infection of intestinal myeloid cells and increased extraintestinal dissemination of virus. Interestingly, the trade-off for this mutation was reduced fitness in an IFN-competent host, in which CR6 bearing F514I exhibited decreased intestinal replication and shedding. In an immunodeficient context, a spontaneous amino acid change can thus convert a relatively avirulent viral strain into a lethal pathogen.


Subject(s)
Caliciviridae Infections/virology , Capsid Proteins/genetics , Norovirus/genetics , Norovirus/pathogenicity , Virulence/genetics , Animals , Caliciviridae Infections/genetics , Caliciviridae Infections/immunology , Genetic Fitness/genetics , Immunity, Innate/immunology , Mice , Norovirus/immunology , Polymorphism, Single Nucleotide , Virulence/immunology , Virus Replication
16.
Sci Rep ; 11(1): 3033, 2021 02 04.
Article in English | MEDLINE | ID: mdl-33542335

ABSTRACT

We investigated the efficiency of the Verigene Enteric Pathogens Nucleic Acid Test (Verigene EP test), which is an automated microarray-based assay system that enables rapid and simultaneous genetic detection of gastrointestinal pathogens and toxins, including those in the Campylobacter Group, Salmonella species, Shigella species, the Vibrio Group, Yersinia enterocolitica, Shiga toxin 1 and 2, norovirus GI/GII, and rotavirus A. Three clinical laboratories evaluated the Verigene EP test, using 268 stool samples for bacterial and toxin genes and 167 samples for viral genes. Culture-based reference methods were used for the detection of bacteria and toxins, while a different molecular assay was used for viral detection. The overall concordance rate between the Verigene EP test and the reference methods for the 1940 assays was 99.0%. The overall sensitivity and specificity of the Verigene EP test were 97.0% and 99.3%, respectively. Of the 19 samples with discordant results, 13 samples were false positives and six were false negatives. The Verigene EP test simultaneously detected two targets in 11 samples; overall, the test demonstrated high efficiency in detecting crucial diarrheagenic pathogens, indicating its suitability for clinical practice.


Subject(s)
Bacterial Toxins/isolation & purification , Diarrhea/diagnosis , Gastroenteritis/microbiology , Gastrointestinal Microbiome , Bacterial Toxins/genetics , Diarrhea/genetics , Diarrhea/microbiology , Feces/microbiology , Gastroenteritis/diagnosis , Gastroenteritis/genetics , Humans , Molecular Diagnostic Techniques , Norovirus/genetics , Norovirus/isolation & purification , Norovirus/pathogenicity , Nucleic Acid Amplification Techniques/methods , Shiga Toxin 1/chemistry , Shiga Toxin 1/genetics , Shiga Toxin 1/isolation & purification , Shigella/genetics , Shigella/isolation & purification , Shigella/pathogenicity
17.
Viruses ; 13(2)2021 01 21.
Article in English | MEDLINE | ID: mdl-33494515

ABSTRACT

Norovirus is the leading cause of acute gastroenteritis worldwide. The pathogenesis of norovirus and the induced immune response remain poorly understood due to the lack of a robust virus culture system. The monolayers of two secretor-positive Chinese human intestinal enteroid (HIE) lines were challenged with two norovirus pandemic GII.4 Sydney strains. Norovirus RNA replication in supernatants and cell lysates were quantified by RT-qPCR. RNA expression levels of immune-related genes were profiled using PCR arrays. The secreted protein levels of shortlisted upregulated genes were measured in supernatants using analyte-specific enzyme-linked immunosorbent assay (ELISA). Productive norovirus replications were achieved in three (75%) out of four inoculations. The two most upregulated immune-related genes were CXCL10 (93-folds) and IFI44L (580-folds). Gene expressions of CXCL10 and IFI44L were positively correlated with the level of norovirus RNA replication (CXCL10: Spearman's r = 0.779, p < 0.05; IFI44L: r = 0.881, p < 0.01). The higher level of secreted CXCL10 and IFI44L proteins confirmed their elevated gene expression. The two genes have been reported to be upregulated in norovirus volunteer challenges and natural human infections by other viruses. Our data suggested that HIE could mimic the innate immune response elicited in natural norovirus infection and, therefore, could serve as an experimental model for future virus-host interaction and antiviral studies.


Subject(s)
Caliciviridae Infections/immunology , Chemokine CXCL10/metabolism , Intestines/virology , Tumor Suppressor Proteins/metabolism , Aged , Aged, 80 and over , Cell Line , Chemokine CXCL10/genetics , Female , Host Microbial Interactions , Humans , Immunity, Innate , Interferons/genetics , Interferons/metabolism , Intestines/immunology , Male , Middle Aged , Models, Biological , Norovirus/pathogenicity , Norovirus/physiology , Organoids/immunology , Organoids/virology , Sequence Analysis, RNA , Tumor Suppressor Proteins/genetics , Virus Replication
18.
Nat Protoc ; 16(3): 1452-1475, 2021 03.
Article in English | MEDLINE | ID: mdl-33514945

ABSTRACT

Norovirus is a widespread public health threat and has a very low infectious dose. This protocol presents the extremely sensitive mobile detection of norovirus from water samples using a custom-built smartphone-based fluorescence microscope and a paper microfluidic chip. Antibody-conjugated fluorescent particles are immunoagglutinated and spread over the paper microfluidic chip by capillary action for individual counting using a smartphone-based fluorescence microscope. Smartphone images are analyzed using intensity- and size-based thresholding for the elimination of background noise and autofluorescence as well as for the isolation of immunoagglutinated particles. The resulting pixel counts of particles are correlated with the norovirus concentration of the tested sample. This protocol provides detailed guidelines for the construction and optimization of the smartphone- and paper-based assay. In addition, a 3D-printed enclosure is presented to incorporate all components in a dark environment. On-chip concentration and the assay of higher concentrations are presented to further broaden the assay range. This method is the first to be presented as a highly sensitive mobile platform for norovirus detection using low-cost materials. With all materials and reagents prepared, a single standard assay takes under 20 min. Although the method described is used for detection of norovirus, the same protocol could be adapted for detection of other pathogens by using different antibodies.


Subject(s)
Microfluidics/instrumentation , Microscopy, Fluorescence/methods , Single Molecule Imaging/methods , Fluorescence , Lab-On-A-Chip Devices , Microfluidics/methods , Norovirus/isolation & purification , Norovirus/pathogenicity , Smartphone , Water/analysis , Water Microbiology
19.
BMJ Mil Health ; 167(1): 59-62, 2021 Feb.
Article in English | MEDLINE | ID: mdl-32409618

ABSTRACT

INTRODUCTION: Norovirus gastroenteritis is one of the most frequent causes of personnel unavailability in military units, being associated with significant morbidity and degradation of their operational effectiveness. The disease is usually mild but can be severe and life-threatening in young and healthy soldiers, who are prone to dehydration due to intensive daily activity. Despite its impact, the full extent of the norovirus gastroenteritis burden in military forces remains unclear. This systematic review aims to evaluate the impact and ascertain clinical and epidemiological features of norovirus outbreaks that have occurred in the military forces. METHODS: The systematic review followed the Preferred Reporting Items for Systemic Reviews and Meta-Analysis (PRISMA) guidelines and used three databases: PubMed, Scopus, and LILACs. Papers published up to 1 September 2019 were included without restrictions if they reported one or more outbreaks in the military forces on active duty, either on national territories or deployed overseas. RESULTS: A total of 343 papers were retrieved from the literature search. After inclusion/exclusion criteria a total of 39 eligible papers were considered. From 1988 (first reported outbreak in the military) to 2018 more than 101 norovirus outbreaks have been reported in the military, accounting for at least 24 332 cases. Secondary transmission was emphasised as the main route of norovirus transmission in the military forces, with eating outside the military setting an important route for the primary cases. CONCLUSIONS: The present review highlights that norovirus gastroenteritis has been a burden to military troops both in combat and on peacekeeping operations. Norovirus disease has been shown to exact a substantial toll on mission readiness and operational effectiveness. It is noteworthy that the impact of norovirus outbreaks among military units is underestimated because the literature review retrieved information from the armed forces from only nine countries.


Subject(s)
Caliciviridae Infections/complications , Disease Outbreaks/prevention & control , Military Medicine/methods , Caliciviridae Infections/epidemiology , Caliciviridae Infections/transmission , Humans , Military Medicine/trends , Military Personnel , Norovirus/drug effects , Norovirus/pathogenicity
20.
BMJ Mil Health ; 167(1): 40-43, 2021 Feb.
Article in English | MEDLINE | ID: mdl-31278165

ABSTRACT

INTRODUCTION: Norovirus outbreaks frequently occur in communities and institutional settings acquiring a particular significance in armed forces where prompt reporting is critical. Here we describe the epidemiological, clinical and laboratorial investigation of a multicentre gastroenteritis outbreak that was detected simultaneously in three Portuguese army units with a common food supplier, Lisbon region, between 5 and 6 December 2017. METHODS: Questionnaires were distributed to all soldiers stationed in the three affected army units, and stool specimens were collected from soldiers with acute gastrointestinal illness. Stool specimens were tested for common enteropathogenic bacteria by standard methods and screened for a panel of enteric viruses using a multiplex real-time PCR assay. Food samples were also collected for microbiological analysis. Positive stool specimens for norovirus were further genotyped. RESULTS: The three simultaneous acute gastroenteritis outbreaks affected a 31 (3.5%) soldiers from a total of 874 stationed at the three units and lasted for 2 days. No secondary cases were reported. Stool specimens (N=11) were negative for all studied enteropathogenic agents but tested positive for norovirus. The recombinant norovirus GII.P16-GII.4 Sydney was identified in all positive samples with 100% identity. CONCLUSIONS: The results are suggestive of a common source of infection plausibly related to the food supplying chain. Although centralisation of food supplying in the army has economic advantages, it may contribute to the multifocal occurrence of outbreaks. A rapid intervention is key in the mitigation of outbreak consequences and in reducing secondary transmission.


Subject(s)
Disease Outbreaks/statistics & numerical data , Military Facilities/statistics & numerical data , Military Personnel/statistics & numerical data , Caliciviridae Infections/epidemiology , Feces/virology , Food Quality , Gastroenteritis/epidemiology , Gastroenteritis/virology , Humans , Norovirus/drug effects , Norovirus/pathogenicity , Portugal/epidemiology , Surveys and Questionnaires
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