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1.
Anal Methods ; 16(22): 3530-3538, 2024 Jun 06.
Article En | MEDLINE | ID: mdl-38779841

Biomolecules play vital roles in many biological processes and diseases, making their identification crucial. Herein, we present a colorimetric sensing method for detecting biomolecules like cysteine (Cys), homocysteine (Hcy), and glutathione (GSH). This approach is based on a reaction system whereby colorless 3,3',5,5'-tetramethylbenzidine (TMB) undergoes catalytic oxidation to form blue-colored oxidized TMB (ox-TMB) in the presence of hydrogen peroxide (H2O2), utilizing the peroxidase and catalase-mimicking activities of metal-phenolic coordination frameworks (MPNs) of Cu-TA, Co-TA, and Fe-TA nanospheres. The Fe-TA nanospheres demonstrated superior activity, more active sites and enhanced electron transport. Under optimal conditions, the Fe-TA nanospheres were used for the detection of biomolecules. When present, biomolecules inhibit the reaction between TMB and H2O2, causing various colorimetric responses at low detection limits of 0.382, 0.776 and 0.750 µM for Cys, Hcy and GSH. Furthermore, it was successfully applied to real water samples with good recovery results. The developed sensor not only offers a rapid, portable, and user-friendly technique for multi-target analysis of biomolecules at low concentrations but also expands the potential uses of MPNs for other targets in the environmental field.


Benzidines , Colorimetry , Cysteine , Glutathione , Hydrogen Peroxide , Colorimetry/methods , Hydrogen Peroxide/chemistry , Glutathione/chemistry , Glutathione/analysis , Cysteine/chemistry , Cysteine/analysis , Benzidines/chemistry , Homocysteine/analysis , Homocysteine/chemistry , Metal-Organic Frameworks/chemistry , Limit of Detection , Phenols/chemistry , Phenols/analysis , Oxidation-Reduction , Catalysis , Peroxidase/chemistry , Catalase/chemistry
2.
Anal Methods ; 16(22): 3562-3576, 2024 Jun 06.
Article En | MEDLINE | ID: mdl-38780406

In this study, we proposed a colorimetric probe as S, N-carbon dot-decorated Ce-MOF (S, N-CD@Ce-MOF) for the dual detection of mercury and thiophanate methyl (TM), which are simultaneously present pollutants in the environment and foodstuffs. These pollutants cause serious threats to human health, such as carcinogenicity and neurovirulence. Herein, we synthesized S, N-CD@Ce-MOF using the hydrothermal method and applied it to a "turn-off-on" probe to detect mercury and TM using the colorimetric method in water and food samples. S, N-CD@Ce-MOF shows excellent peroxidase activity by catalyzing the chromogenic substrate of 3,3',5,5'-tetramethylbenzidine (TMB), resulting in deep blue-colored oxidized TMB product (ox TMB) in the presence of H2O2 with a UV absorption wavelength at 654 nm. However, the addition of Hg(II) ions prohibits the oxidation of TMB by an electron transfer effect and easily binds with -S, -N-containing sites on the surface of carbon dots, obstructing the catalytic active sites and decreasing catalytic efficiency with weak UV absorption at 654 nm as a "turn-off". Subsequently, the addition of TM to the above sensing solution as a "turn-on" was triggered by the TM-Hg complex formation and permitted TMB oxidation with a strong absorption peak at 654 nm. Furthermore, this proposed sensor demonstrates a superior linear response to mercury ions and TM in the ranges from 0 to 15 µM and 0 to 14 µM, respectively. The developed colorimetric assay exhibits good sensitivity and selectivity against various possible interferences. Furthermore, we found that the limits of detection for Hg2+ and TM were as low as 0.01 µM and 0.03 µM, respectively. The developed sensor provides various benefits, such as cost-effectiveness, simplicity without a complex detection process, and naked-eye detection. Consequently, our proposed colorimetric technique worked well for the detection of Hg2+ in real water samples and TM in real apple and tomato juice.


Carbon , Cerium , Colorimetry , Mercury , Quantum Dots , Colorimetry/methods , Mercury/analysis , Mercury/chemistry , Carbon/chemistry , Cerium/chemistry , Quantum Dots/chemistry , Metal-Organic Frameworks/chemistry , Limit of Detection , Peroxidase/chemistry , Peroxidase/metabolism , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/chemistry , Oxidation-Reduction
3.
J Phys Chem Lett ; 15(22): 5804-5813, 2024 Jun 06.
Article En | MEDLINE | ID: mdl-38781458

Nanozymes are unique materials with many valuable properties for applications in biomedicine, biosensing, environmental monitoring, and beyond. In this work, we developed a machine learning (ML) approach to search for new nanozymes and deployed a web platform, DiZyme, featuring a state-of-the-art database of nanozymes containing 1210 experimental samples, catalytic activity prediction, and DiZyme Assistant interface powered by a large language model (LLM). For the first time, we enable the prediction of multiple catalytic activities of nanozymes by training an ensemble learning algorithm achieving R2 = 0.75 for the Michaelis-Menten constant and R2 = 0.77 for the maximum velocity on unseen test data. We envision an accurate prediction of multiple catalytic activities (peroxidase, oxidase, and catalase) promoting novel applications for a wide range of surface-modified inorganic nanozymes. The DiZyme Assistant based on the ChatGPT model provides users with supporting information on experimental samples, such as synthesis procedures, measurement protocols, etc. DiZyme (dizyme.aicidlab.itmo.ru) is now openly available worldwide.


Machine Learning , Catalysis , Catalase/chemistry , Catalase/metabolism , Nanostructures/chemistry , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Peroxidase/chemistry , Peroxidase/metabolism , Algorithms
4.
J Mater Chem B ; 12(22): 5418-5430, 2024 Jun 05.
Article En | MEDLINE | ID: mdl-38716837

Constructing metal-organic gels (MOGs) with enzyme-catalyzed activity and studying their catalytic mechanism are crucial for the development of novel nanozyme materials. In this study, a Co@Fe MOG with excellent peroxidase activity was developed by a simple and mild one-pot process. The results showed that the material exhibited almost a single peroxidase activity under optimal pH conditions, which allowed it to attract and oxidize the chromogenic substrate 3,3',5,5'-tetramethylbenzidine (TMB). Based on the active electron transfer between the metal centers and the organic ligand in the synthetic material, the Co@Fe MOG-H2O2-TMB system was verified to be able to detect H2O2 and citric acid (CA). The catalytic microenvironment formed by the adsorption and the catalytic center accelerated the electron-transfer rate, which expedited the generation of hydroxyl radicals (˙OH, a kind of reactive oxygen species (ROS)) in the presence of H2O2. The persistence and high intensity of ˙OH generation were proven, which would endow Co@Fe MOG with a certain antibacterial ability, promoting the healing of bacteria-infected wounds. In conclusion, this study contributes to the development efforts toward the application systems of nanozymes for marker detection and antibacterial activity.


Anti-Bacterial Agents , Cobalt , Colorimetry , Gels , Iron , Peroxidase , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Iron/chemistry , Cobalt/chemistry , Colorimetry/methods , Gels/chemistry , Peroxidase/metabolism , Peroxidase/chemistry , Porosity , Metal-Organic Frameworks/chemistry , Metal-Organic Frameworks/pharmacology , Hydrogen Peroxide/analysis , Hydrogen Peroxide/metabolism , Hydrogen Peroxide/chemistry , Microbial Sensitivity Tests , Escherichia coli/drug effects , Escherichia coli/enzymology , Staphylococcus aureus/drug effects , Particle Size , Catalysis
5.
Spectrochim Acta A Mol Biomol Spectrosc ; 317: 124392, 2024 Sep 05.
Article En | MEDLINE | ID: mdl-38704997

Nanozyme-based colorimetric sensing has drawn immense attention due to the rapid development of nanozyme in recent years. However, the selectivity of nanozyme-based colorimetric sensing greatly limits its subsequent practical application. It is well known that sample pretreatment can not only improve selectivity by eliminating the sample matrix interference, but also improve sensitivity by enriching trace targets. Based on the easy facile surface modification properties of nanozyme, we rationally designed nanozyme combined with sample pretreatment for colorimetric biosensing, through separation and enrichment, thereby improving the selectivity and sensitivity of the nanozyme colorimetric biosensing. As a proof of concept, the detection of Hg2+ by nanozyme-based colorimetric sensing was used as an example. Magnetic peroxidase-like nanozyme Fe3S4 was designed and synthesized. The selectivity is improved by the specific adsorption of S-Hg bond and the interference elimination after magnetic separation. In addition, the sensitivity is improved by magnetic solid-phase extraction enrichment. Our established colorimetric sensing based on Fe3S4 nanozyme integrated sample pretreatment with an enrichment factor of 100 and the limit of detection (LOD) is 26 nM. In addition, this strategy was successfully applied to detect Hg2+ in environmental water samples. Overall, the strategy showed good selectivity and sensitivity, providing a new practical method for the application of nanozyme-based biosensing in sample pretreatment.


Colorimetry , Limit of Detection , Mercury , Metal-Organic Frameworks , Solid Phase Extraction , Mercury/analysis , Mercury/isolation & purification , Colorimetry/methods , Solid Phase Extraction/methods , Metal-Organic Frameworks/chemistry , Catalysis , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/isolation & purification , Peroxidase/chemistry , Biosensing Techniques/methods
6.
Mikrochim Acta ; 191(6): 331, 2024 05 15.
Article En | MEDLINE | ID: mdl-38744722

A broad host range phage-based nanozyme (Fe-MOF@SalmpYZU47) was prepared for colorimetric detection of multiple Salmonella enterica strains. The isolation of a broad host range phage (SalmpYZU47) capable of infecting multiple S. enterica strains was achieved. Then, it was directly immobilized onto the Fe-MOF to prepare Fe-MOF@SalmpYZU47, exhibiting peroxidase-like activity. The peroxidase-like activity can be specifically inhibited by multiple S. enterica strains, benefiting from the broad host range capture ability of Fe-MOF@SalmpYZU47. Based on it, a colorimetric detection approach was developed for S. enterica in the range from 1.0 × 102 to 1.0 × 108 CFU mL-1, achieving a low limit of detection (LOD) of 11 CFU mL-1. The Fe-MOF@SalmpYZU47 was utilized for detecting S. enterica in authentic food samples, achieving recoveries ranging from 91.88 to 105.34%. Hence, our proposed broad host range phage-based nanozyme exhibits significant potential for application in the colorimetric detection of pathogenic bacteria.


Colorimetry , Limit of Detection , Metal-Organic Frameworks , Salmonella enterica , Colorimetry/methods , Salmonella enterica/isolation & purification , Salmonella enterica/chemistry , Metal-Organic Frameworks/chemistry , Food Microbiology/methods , Food Contamination/analysis , Peroxidase/chemistry
7.
Biosens Bioelectron ; 258: 116351, 2024 Aug 15.
Article En | MEDLINE | ID: mdl-38705074

Multifunctional single-atom catalysts (SACs) have been extensively investigated as outstanding signal amplifiers in bioanalysis field. Herein, a type of Fe single-atom catalysts with Fe-nitrogen coordination sites in nitrogen-doped carbon (Fe-N/C SACs) was synthesized and demonstrated to possess both catalase and peroxidase-like activity. Utilizing Fe-N/C SACs as dual signal amplifier, an efficient bipolar electrode (BPE)-based electrochemiluminescence (ECL) immunoassay was presented for determination of prostate-specific antigen (PSA). The cathode pole of the BPE-ECL platform modified with Fe-N/C SACs is served as the sensing side and luminol at the anode as signal output side. Fe-N/C SACs could catalyze decomposition of H2O2 via their high catalase-like activity and then increase the Faraday current, which can boost the ECL of luminol due to the electroneutrality in a closed BPE system. Meanwhile, in the presence of the target, glucose oxidase (GOx)-Au NPs-Ab2 was introduced through specific immunoreaction, which catalyzes the formation of H2O2. Subsequently, Fe-N/C SACs with peroxidase-like activity catalyze the reaction of H2O2 and 4-chloro-1-naphthol (4-CN) to generate insoluble precipitates, which hinders electron transfer and then inhibits the ECL at the anode. Thus, dual signal amplification of Fe-N/C SACs was achieved by increasing the initial ECL and inhibiting the ECL in the presence of target. The assay exhibits sensitive detection of PSA linearly from 1.0 pg/mL to 100 ng/mL with a detection limit of 0.62 pg/mL. The work demonstrated a new ECL enhancement strategy of SACs via BPE system and expands the application of SACs in bioanalysis field.


Biosensing Techniques , Electrochemical Techniques , Electrodes , Hydrogen Peroxide , Iron , Limit of Detection , Luminescent Measurements , Luminol , Prostate-Specific Antigen , Catalysis , Luminescent Measurements/methods , Electrochemical Techniques/methods , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/analysis , Humans , Luminol/chemistry , Prostate-Specific Antigen/analysis , Prostate-Specific Antigen/blood , Iron/chemistry , Glucose Oxidase/chemistry , Immunoassay/methods , Gold/chemistry , Peroxidase/chemistry , Metal Nanoparticles/chemistry , Nitrogen/chemistry , Carbon/chemistry , Naphthols
8.
Biosens Bioelectron ; 258: 116370, 2024 Aug 15.
Article En | MEDLINE | ID: mdl-38744115

Protein phosphorylation is a significant post-translational modification that plays a decisive role in the occurrence and development of diseases. However, the rapid and accurate identification of phosphoproteins remains challenging. Herein, a high-throughput sensor array has been constructed based on a magnetic bimetallic nanozyme (Fe3O4@ZNP@UiO-66) for the identification and discrimination of phosphoproteins. Attributing to the formation of Fe-Zr bimetallic dual active centers, the as-prepared Fe3O4@ZNP@UiO-66 exhibits enhanced peroxidase-mimicking catalytic activity, which promotes the electron transfer from Zr center to Fe(II)/Fe(III). The catalytic activity of Fe3O4@ZNP@UiO-66 can be selectively inhibited by phosphoproteins due to the strong interaction between phosphate groups and Zr centers, as well as the ultra-robust antifouling capability of zwitterionic dopamine nanoparticle (ZNP). Considering the diverse binding affinities between various proteins with the nanozyme, the catalytic activity of Fe3O4@ZNP@UiO-66 can be changed to various degree, leading to the different absorption responses at 420 nm in the hydrogen peroxide (H2O2) - 2, 2'-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) system. By simply extracting different absorbance intensities at various time points, a sensor array based on reaction kinetics for the discrimination of phosphoproteins from other proteins is constructed through linear discriminant analysis (LDA). Besides, the quantitative determination of phosphoproteins and identification of protein mixtures have been realized. Further, based on the differential level of phosphoproteins in cells, the differentiation of cancer cells from normal cells can also be implemented by utilizing the proposed sensor array, showing great potential in disease diagnosis.


Biosensing Techniques , Hydrogen Peroxide , Neoplasms , Phosphoproteins , Zirconium , Biosensing Techniques/methods , Humans , Phosphoproteins/chemistry , Phosphoproteins/metabolism , Hydrogen Peroxide/chemistry , Zirconium/chemistry , Peroxidase/chemistry , Dopamine/chemistry , Limit of Detection , Biomimetic Materials/chemistry , Catalysis
9.
ACS Nano ; 18(19): 12367-12376, 2024 May 14.
Article En | MEDLINE | ID: mdl-38695521

Bimetallic nanoparticles (NPs) with peroxidase-like (POD-like) activity play a crucial role in biosensing, disease treatment, environmental management, and other fields. However, their development is impeded by a vast range of tunable properties in components and structures, making the establishment of structure-effect relationships and the discovery of active materials challenging. Addressing this, we established robust scaling relationships by meticulously analyzing the catalytic reaction networks of pure metal NPs, which laid the volcano-shaped correlation between the activity and O* adsorption energy. Utilizing these relationships, we introduced an innovative and versatile descriptor of the NPs, which was then integrated into a machine learning-accelerated high-throughput computational workflow, significantly boosting the predictive accuracy for the POD-like activity of bimetallic NPs. Our methodological approach enabled the successful prediction of activities for 1260 bimetallic NPs, leading to the identification of several highly effective catalysts. Furthermore, we distilled several strategies for designing efficient bimetallic NPs based on our screening results.


Machine Learning , Metal Nanoparticles , Metal Nanoparticles/chemistry , Catalysis , Peroxidase/chemistry , Peroxidase/metabolism , High-Throughput Screening Assays/methods
10.
Anal Chim Acta ; 1309: 342698, 2024 Jun 22.
Article En | MEDLINE | ID: mdl-38772661

BACKGROUND: The lateral flow immunoassay (LFIA) is widely employed as a point-of-care testing (POCT) technique. However, its limited sensitivity hinders its application in detecting biomarkers with low abundance. Recently, the utilization of nanozymes has been implemented to enhance the sensitivity of LFIA by catalyzing the oxidation of 3,3',5,5'-tetramethylbenzidine (TMB). The catalytic performance of nanozymes plays a crucial role in influencing the sensitivity of LFIA. RESULTS: The Cornus officinalis Sieb. et Zucc-Pd@Pt (CO-Pd@Pt) nanozyme with good peroxidase-like activity was synthesized herein through a facile one-pot method employing Cornus officinalis Sieb. et Zucc extract as a reducing agent. The morphology and composition of the CO-Pd@Pt nanozyme were characterized using TEM, SEM, XRD, and XPS. As a proof of concept, the as-synthesized CO-Pd@Pt nanozyme was utilized in LFIA (CO-Pd@Pt-LFIA) for the detection of human chorionic gonadotropin (hCG). Compared to conventional gold nanoparticles-based LFIA (AuNPs-LFIA), CO-Pd@Pt-LFIA demonstrated a significant enhancement in the limit of detection (LOD, 0.08 mIU/mL), which is approximately 160 times lower than that of AuNPs-LFIA. Furthermore, experiments evaluating accuracy, precision, selectivity, interference, and stability have confirmed the practical applicability of CO-Pd@Pt-LFIA for hCG content determination. SIGNIFICANCE: The present study presents a novel approach for the synthesis of bimetallic nanozymes through environmentally friendly methods, utilizing plant extracts as both protective and reducing agents. Additionally, an easily implementable technique is proposed to enhance signal detection in lateral flow immunoassays.


Palladium , Platinum , Palladium/chemistry , Platinum/chemistry , Immunoassay/methods , Humans , Metal Nanoparticles/chemistry , Limit of Detection , Peroxidase/chemistry , Peroxidase/metabolism , Benzidines/chemistry , Catalysis , Oxidation-Reduction
11.
ACS Appl Mater Interfaces ; 16(20): 26870-26885, 2024 May 22.
Article En | MEDLINE | ID: mdl-38739846

Pathogen detection has become a major research area all over the world for water quality surveillance and microbial risk assessment. Therefore, designing simple and sensitive detection kits plays a key role in envisaging and evaluating the risk of disease outbreaks and providing quality healthcare settings. Herein, we have designed a facile and low-cost colorimetric sensing strategy for the selective and sensitive determination of ß-galactosidase producing pathogens. The hexagonal boron nitride quantum dots (h-BN QDs) were established as a nanozyme that showed prominent peroxidase-like activity, which catalyzes 3,3',5,5'-tetramethylbenzidine (TMB) oxidation by H2O2. The h-BN QDs were embedded on a layer-by-layer assembled agarose biopolymer. The ß-galactosidase enzyme partially degrades ß-1,4 glycosidic bonds of agarose polymer, resulting in accessibility of h-BN QDs on the solid surface. This assay can be conveniently conducted and analyzed by monitoring the blue color formation due to TMB oxidation within 30 min. The nanocomposite was stable for more than 90 days and was showing TMB oxidation after incubating it with Escherichia coli (E. coli). The limit of detection was calculated to be 1.8 × 106 and 1.5 × 106 CFU/mL for E. coli and Klebsiella pneumonia (K. pneumonia), respectively. Furthermore, this novel sensing approach is an attractive platform that was successfully applied to detect E. coli in spiked water samples and other food products with good accuracy, indicating its practical applicability for the detection of pathogens in real samples.


Benzidines , Boron Compounds , Colorimetry , Escherichia coli , Quantum Dots , beta-Galactosidase , Quantum Dots/chemistry , Colorimetry/methods , beta-Galactosidase/metabolism , beta-Galactosidase/chemistry , Escherichia coli/isolation & purification , Escherichia coli/enzymology , Boron Compounds/chemistry , Benzidines/chemistry , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/analysis , Peroxidase/chemistry , Peroxidase/metabolism , Limit of Detection , Oxidation-Reduction , Klebsiella pneumoniae/enzymology , Klebsiella pneumoniae/isolation & purification
12.
Arch Biochem Biophys ; 756: 110023, 2024 Jun.
Article En | MEDLINE | ID: mdl-38705227

Myeloperoxidase is a critical component of the antibacterial arsenal of neutrophils, whereby it consumes H2O2 as an oxidant to convert halogen and pseudohalogen anions into cytotoxic hypohalous acids. Following phagocytosis by neutrophils, the human pathogen Staphylococcus aureus secretes a potent myeloperoxidase inhibitory protein, called SPIN, as part of its immune evasion repertoire. The matured S. aureus SPIN polypeptide consists of only 73 residues yet contains two functional domains: whereas the 60 residue C-terminal helical bundle domain is responsible for MPO binding, the 13 residue N-terminal domain is required to inhibit MPO. Previous studies have informed understanding of the SPIN N-terminal domain, but comparatively little is known about the helical domain insofar as the contribution of individual residues is concerned. To address this limitation, we carried out a residue-level structure/function investigation on the helical bundle domain of S. aureus SPIN. Using sequence conservation and existing structures of SPIN bound to human MPO as a guide, we selected residues L49, E50, H51, E52, Y55, and Y75 for interrogation by site-directed mutagenesis. We found that loss of L49 or E52 reduced SPIN activity by roughly an order of magnitude, but that loss of Y55 or H51 caused progressively greater loss of inhibitory potency. Direct binding studies by SPR showed that loss of inhibitory potency in these SPIN mutants resulted from a diminished initial interaction between the inhibitor and MPO. Together, our studies provide new insights into the structure/function relationships of SPIN and identify positions Y55 and H51 as critical determinants of SPIN function.


Peroxidase , Staphylococcus aureus , Staphylococcus aureus/enzymology , Humans , Peroxidase/chemistry , Peroxidase/metabolism , Peroxidase/antagonists & inhibitors , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Protein Domains , Amino Acid Sequence , Mutagenesis, Site-Directed , Models, Molecular , Protein Conformation, alpha-Helical
13.
J Phys Chem B ; 128(14): 3383-3397, 2024 Apr 11.
Article En | MEDLINE | ID: mdl-38563384

Dehaloperoxidase (DHP) is a multifunctional hemeprotein with a functional switch generally regulated by the chemical class of the substrate. Its two isoforms, DHP-A and DHP-B, differ by only five amino acids and have an almost identical protein fold. However, the catalytic efficiency of DHP-B for oxidation by a peroxidase mechanism ranges from 2- to 6-fold greater than that of DHP-A depending on the conditions. X-ray crystallography has shown that many substrates and ligands have nearly identical binding in the two isoenzymes, suggesting that the difference in catalytic efficiency could be due to differences in the conformational dynamics. We compared the backbone dynamics of the DHP isoenzymes at pH 7 through heteronuclear relaxation dynamics at 11.75, 16.45, and 19.97 T in combination with four 300 ns MD simulations. While the overall dynamics of the isoenzymes are similar, there are specific local differences in functional regions of each protein. In DHP-A, Phe35 undergoes a slow chemical exchange between two conformational states likely coupled to a swinging motion of Tyr34. Moreover, Asn37 undergoes fast chemical exchange in DHP-A. Given that Phe35 and Asn37 are adjacent to Tyr34 and Tyr38, it is possible that their dynamics modulate the formation and migration of the active tyrosyl radicals in DHP-A at pH 7. Another significant difference is that both distal and proximal histidines have a 15-18% smaller S2 value in DHP-B, thus their greater flexibility could account for the higher catalytic activity. The distal histidine grants substrate access to the distal pocket. The greater flexibility of the proximal histidine could also accelerate H2O2 activation at the heme Fe by increased coupling of an amino acid charge relay to stabilize the ferryl Fe(IV) oxidation state in a Poulos-Kraut "push-pull"-type peroxidase mechanism.


Histidine , Polychaeta , Animals , Histidine/chemistry , Isoenzymes/metabolism , Hydrogen Peroxide/metabolism , Hemoglobins/chemistry , Peroxidases/chemistry , Peroxidase/chemistry , Polychaeta/chemistry , Polychaeta/metabolism , Crystallography, X-Ray
14.
Biosens Bioelectron ; 255: 116259, 2024 Jul 01.
Article En | MEDLINE | ID: mdl-38574559

Carbon-based nanozymes possessing peroxidase-like activity have attracted significant interest because of their potential to replace native peroxidases in biotechnology. Although various carbon-based nanozymes have been developed, their relatively low catalytic efficiency needs to be overcome to realize their practical utilization. Here, inspired by the elemental uniqueness of Cu and the doped elements N and S, as well as the active site structure of Cu-centered oxidoreductases, we developed a new carbon-based peroxidase-mimicking nanozyme, single-atom Cu-centered N- and S-codoped reduced graphene oxide (Cu-NS-rGO), which preserved many Cu-N4 and Cu-N4S active sites and showed dramatically high peroxidase-like activity without any oxidase-like activity, yielding up to 2500-fold higher catalytic efficiency (kcat/Km) than that of pristine rGO. The high catalytic activity of Cu-NS-rGO might be attributed to the acceleration of electron transfer from Cu single atom as well as synergistic effects from both Cu-N4 and Cu-N4S active sites, which was theoretically confirmed by Gibbs free energy calculations using density functional theory. The prepared Cu-NS-rGO was then used to construct an electrochemical bioassay system for detecting choline and acetylcholine by coupling with the corresponding oxidases. Using this system, both target molecules were selectively determined with high sensitivity that was sufficient to clinically determine their levels in physiological fluids. Overall, this study will facilitate the development of nanocarbon-based nanozymes and their electrochemical biosensing applications, which can be extended to the development of miniaturized devices in point-of-care testing environments.


Biosensing Techniques , Graphite , Peroxidase , Peroxidase/chemistry , Catalytic Domain , Peroxidases/chemistry , Oxidoreductases , Carbon/chemistry
15.
Anal Methods ; 16(16): 2606-2613, 2024 Apr 25.
Article En | MEDLINE | ID: mdl-38618990

2,6-Pyridinedicarboxylic acid (DPA) is a significant biomarker of anthrax, which is a deadly infectious disease for human beings. However, the development of a convenient anthrax detection method is still a challenge. Herein, we report a novel europium metal-organic framework (Eu-MOF) with an enhanced peroxidase-like activity and fluorescence property for DPA detection. The Eu-MOF was one-step synthesized using Eu3+ ions and 2-methylimidazole. In the presence of DPA, the intrinsic fluorescence of Eu3+ ions is sensitized, the fluorescence intensity linearly increases with an increase in DPA concentration, and the fluorescence color changes from blue to purple. Simultaneously, the peroxide-like activity of the Eu-MOF is enhanced by DPA, which can promote the oxidation of TMB to oxTMB. The absorbance values increase linearly with DPA concentrations, and the colorimetric images change from colorless to blue. The dual-mode detection of DPA has good sensitivity with a colorimetric detection limit of 0.67 µM and a fluorescent detection limit of 16.67 nM. Moreover, a simple detection method for DPA was developed using a smartphone with the RGB analysis system. A portable kit with standard color cards was developed using paper test strips. The proposed methods have good practicability for DPA detection in real samples. In conclusion, the developed Eu-MOF biosensor offers a valuable and general platform for anthrax diagnosis.


Colorimetry , Europium , Metal-Organic Frameworks , Picolinic Acids , Europium/chemistry , Metal-Organic Frameworks/chemistry , Colorimetry/methods , Picolinic Acids/analysis , Picolinic Acids/chemistry , Limit of Detection , Humans , Fluorescence , Anthrax/diagnosis , Smartphone , Spectrometry, Fluorescence/methods , Peroxidase/chemistry , Peroxidase/metabolism
16.
Biosensors (Basel) ; 14(4)2024 Apr 10.
Article En | MEDLINE | ID: mdl-38667178

As a potent detection method for cancer biomarkers in physiological fluid, a colorimetric and electrochemical dual-mode sensing platform for breast cancer biomarker thioredoxin 1 (TRX1) was developed based on the excellent peroxidase-mimicking and electrocatalytic property of Prussian blue nanoparticles (PBNPs). PBNPs were hydrothermally synthesized using K3[Fe(CN)6] as a precursor and polyvinylpyrrolidone (PVP) as a capping agent. The synthesized spherical PBNPs showed a significant peroxidase-like activity, having approximately 20 and 60% lower Km values for 3,3',5,5'-tetramethylbenzidine (TMB) and H2O2, respectively, compared to those of horseradish peroxidase (HRP). The PBNPs also enhanced the electron transfer on the electrode surface. Based on the beneficial features, PBNPs were used to detect target TRX1 via sandwich-type immunoassay procedures. Using the strategies, TRX1 was selectively and sensitively detected, yielding limit of detection (LOD) values as low as 9.0 and 6.5 ng mL-1 via colorimetric and electrochemical approaches, respectively, with a linear range of 10-50 ng mL-1 in both strategies. The PBNP-based TRX1 immunoassays also exhibited a high degree of precision when applied to real human serum samples, demonstrating significant potentials to replace conventional HRP-based immunoassay systems into rapid, robust, reliable, and convenient dual-mode assay systems which can be widely utilized for the identification of important target molecules including cancer biomarkers.


Benzidines , Biosensing Techniques , Colorimetry , Electrochemical Techniques , Ferrocyanides , Nanoparticles , Thioredoxins , Ferrocyanides/chemistry , Humans , Nanoparticles/chemistry , Limit of Detection , Hydrogen Peroxide , Catalysis , Peroxidase/chemistry , Immunoassay
17.
Talanta ; 275: 126119, 2024 Aug 01.
Article En | MEDLINE | ID: mdl-38640521

Present work reported a novel nanozyme g-C3N4@Cu, N-CDs with excellent peroxidase-like activity obtained by loading Cu and N co-doped carbon dots on g-C3N4 (graphitic carbon nitride). g-C3N4@Cu, N-CDs can catalyze H2O2 to generate hydroxyl radical •OH, which oxidizes o-phenylenediamine to 2,3-diaminophenazine, which emits orange fluorescence under ultraviolet light irradiation. The experimental results confirmed that 1,4-benzenedithiol (BDT) could inhibit the peroxidase-like activity of g-C3N4@Cu, N-CDs. Based the principle above, a colorimetric-fluorescence dual-mode sensor for rapidly sensing of BDT was creatively constructed with assisting of a smartphone. The sensor showed excellent linearity over ranges of 0.75-132 µM and 0.33-60.0 µM with detection limits of 0.32 µM and 0.25 µM for colorimetric and fluorescence detection, respectively. Moreover, a smartphone-assisted colorimetric array sensor was constructed to distinguish six sulfur-containing compounds according to the difference in the degree of inhibition of nanozyme activity by different sulfur-containing compounds. The array sensor could distinguish sulfur-containing compounds at low concentration as low as 0.4 µM. The results validated that the designed sensor was a convenient and fast platform, which could be utilized as a reliably portable tool for the efficient and accurate detection of BDT and the discrimination of multiple sulfur compounds in real water samples.


Colorimetry , Copper , Smartphone , Sulfides , Colorimetry/methods , Copper/chemistry , Sulfides/chemistry , Cadmium Compounds/chemistry , Water Pollutants, Chemical/analysis , Peroxidase/chemistry , Peroxidase/metabolism , Fluorescence , Sulfur Compounds/analysis , Sulfur Compounds/chemistry , Limit of Detection , Spectrometry, Fluorescence/methods , Sulfhydryl Compounds/chemistry , Sulfhydryl Compounds/analysis , Carbon/chemistry , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/analysis , Graphite , Nitrogen Compounds
18.
Anal Methods ; 16(18): 2948-2958, 2024 May 09.
Article En | MEDLINE | ID: mdl-38669009

Herein, a novel type of phosphorus and iron-doped carbon dot (P,Fe-CD) with outstanding peroxidase activity and excellent fluorescence performance was hydrothermally synthesized to colorimetrically and fluorimetrically detect tannic acid (TA). In the presence of 3,3',5,5'-tetramethylbenzidine (TMB) and H2O2, the P,Fe-CDs could oxidize colorless TMB to a blue oxidation product (oxTMB) resulting in an increased value of absorbance. Simultaneously, the fluorescence intensity of P,Fe-CDs at 430 nm could be quenched owing to the fluorescence resonance energy transfer (FRET) between P,Fe-CDs and the generated oxTMB. Meanwhile, after adding the TA to the system containing TMB, H2O2 and P,Fe-CDs, the value of absorbance could be decreased and the fluorescence could be recovered because of the reduction reaction between TA and oxTMB. Therefore, fluorescence intensity and value of absorbance could be applied to quantitatively detect TA with good linearities between the concentration of TA and the fluorescence intensity/value of absorbance (0.997 and 0.997 for the colorimetric signal and fluorimetric one, respectively) and low limits of detection (0.093 µmol L-1 and 0.053 µmol L-1 for the colorimetry and the fluorimetry, respectively), which was successfully applied to the detection of TA in red wines. Moreover, we applied a smartphone-assisted method to the point-of-care detection of TA with accurate results, providing a new technique for TA detection and food quality monitoring.


Carbon , Quantum Dots , Tannins , Wine , Tannins/chemistry , Wine/analysis , Carbon/chemistry , Quantum Dots/chemistry , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/analysis , Colorimetry/methods , Peroxidase/chemistry , Peroxidase/metabolism , Limit of Detection , Fluorescence Resonance Energy Transfer/methods , Benzidines/chemistry , Oxidation-Reduction , Polyphenols
19.
Mikrochim Acta ; 191(5): 268, 2024 04 17.
Article En | MEDLINE | ID: mdl-38627271

Hybrid nanozyme graphene quantum dots (GQDs) deposited TiO2 nanotubes (NTs) on titanium foil (Ti/TiO2 NTs-GQDs) were manufactured by bestowing the hybrid with the advantageous porous morphology, surface valence states, high surface area, and copious active sites. The peroxidase-like activity was investigated through the catalytic oxidation of chromogenic substrate 3,3',5,5'-tetramethylbenzidine (TMB) in the presence of H2O2, which can be visualized by the eyes. TiO2 NTs and GQDs comprising oxygen-containing functional groups can oxidize TMB in the presence of H2O2 by mimicking peroxidase enzymes. The peroxidase-mimicking activity of hybrid nanozyme was significantly escalated by introducing light illumination due to the photosensitive features of the hybrid material. The peroxidase-like activity of Ti/TiO2 NTs-GQDs enabled H2O2 determination over the linear range of 7 to 250 µM, with a LOD of 2.1 µM. The satisfying peroxidase activity is possibly due to the unimpeded access of H2O2 to the catalyst's active sites. The porous morphology provides the easy channeling of reactants and products. The periodic structure of the material also gave rise to acceptable reproducibility. Without material functionalization, the Ti/TiO2 NTs-GQDs can be a promising substitute for peroxidases for H2O2 detection.


Benzidines , Graphite , Nanotubes , Quantum Dots , Graphite/chemistry , Peroxidase/chemistry , Quantum Dots/chemistry , Hydrogen Peroxide/chemistry , Reproducibility of Results , Nanotubes/chemistry
20.
Anal Chem ; 96(19): 7661-7668, 2024 May 14.
Article En | MEDLINE | ID: mdl-38687969

The development of sensitive, selective, and rapid methods to detect bacteria in complex media is essential to ensuring human health. Virulence factors, particularly pore-forming toxins (PFTs) secreted by pathogenic bacteria, play a crucial role in bacterial diseases and serve as indicators of disease severity. In this study, a nanochannel-based label-free electrochemical sensing platform was developed for the detection of specific pathogenic bacteria based on their secreted PFTs. In this design, wood substrate channels were functionalized with a Fe-based metal-organic framework (FeMOF) and then protected with a layer of phosphatidylcholine (PC)-based phospholipid membrane (PM) that serves as a peroxidase mimetic and a channel gatekeeper, respectively. Using Staphylococcus aureus (S. aureus) as the model bacteria, the PC-specific PFTs secreted by S. aureus perforate the PM layer. Now exposed to the FeMOF, uncharged 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate) (ABTS) molecules in the electrolyte undergo oxidation to cationic products (ABTS•+). The measured transmembrane ionic current indicates the presence of S. aureus and methicillin-resistant S. aureus (MRSA) with a low detection limit of 3 cfu mL-1. Besides excellent specificity, this sensing approach exhibits satisfactory performance for the detection of target bacteria in the complex media of food.


Electrochemical Techniques , Staphylococcus aureus , Staphylococcus aureus/isolation & purification , Staphylococcus aureus/metabolism , Metal-Organic Frameworks/chemistry , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Peroxidase/metabolism , Peroxidase/chemistry , Bacterial Toxins/metabolism , Bacterial Toxins/analysis , Biosensing Techniques
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