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1.
Parasitol Res ; 120(4): 1219-1232, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33521841

ABSTRACT

A new trematode species, Derogenes lacustris Tsuchida, Flores, Viozzi, Rauque et Urabe n. sp. (Derogenidae: Derogeninae), from freshwater fishes is described using morphological and molecular approaches in Argentinean Patagonia. D. lacustris is the most common hemiuroidean species in the Limay River basin and parasitizes almost all the native and introduced Patagonian freshwater fish. This new species could be considered as the unique freshwater species in the genus Derogenes Nicoll, 1910. Another hemiuroidean species, Thometrema patagonica Szidat (Archiev Hydrobiol 51: 542-577, 1956) Lunaschi et Drago 2000 (Derogenidae: Halipeginae), is found from Percichthys trucha (Perciformes) in the Neuquén River basin. Its diagnosis and molecular data are provided by the present study. In the molecular analysis of the Patagonian hemiuroideans, T. patagonica composes a group with halipeginean species in the phylogenetic tree of 28S rDNA sequences, while D. lacustris is not included in the same group. D. lacustris also shows low intraspecific variation in COI sequences regardless of the localities or host species.


Subject(s)
Fish Diseases/parasitology , Perciformes/parasitology , Trematoda/classification , Trematode Infections/veterinary , Animals , Argentina , Electron Transport Complex IV/genetics , Female , Fresh Water , Host Specificity , Male , Phylogeny , RNA, Helminth/genetics , RNA, Ribosomal, 28S/genetics , Rivers , Trematoda/genetics , Trematoda/isolation & purification , Trematode Infections/parasitology
2.
Parasitol Res ; 120(4): 1371-1377, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33624148

ABSTRACT

We report and discuss the surprising encounter of a dog naturally infected by Dracunculus sp. in Brazil, a brief clinical history of the animal and a procedure for removing the nematode. We also present details on the morphology of the fragments collected from the nematode and a phylogenetic comparison of the partial sequences of the mitochondrial 18S rRNA and cytochrome c oxidase subunit I (COI) genes, deposited with others in GenBank. The samples were an independent lineage forming a well-supported monophyletic assemblage with D. medinensis. We thus conclude that this species has not yet been sequenced or even described and will only be elucidated by more information because only two species of Dracunculus have been reported in Brazil, D. fuelleborni and D. brasiliensis.


Subject(s)
Dog Diseases/parasitology , Dracunculiasis/veterinary , Dracunculus Nematode/genetics , Animals , Brazil , Dogs , Dracunculiasis/parasitology , Dracunculus Nematode/anatomy & histology , Dracunculus Nematode/classification , Genes, Helminth , Genes, rRNA , Male , Phylogeny , RNA, Helminth/genetics , RNA, Mitochondrial/genetics , RNA, Ribosomal, 18S/genetics
3.
PLoS Negl Trop Dis ; 14(2): e0008080, 2020 02.
Article in English | MEDLINE | ID: mdl-32078636

ABSTRACT

Schistosoma mansoni adaptive success is related to regulation of replication, transcription and translation inside and outside the intermediate and definitive host. We hypothesize that S. mansoni alters its epigenetic state in response to the mammalian host immune system, reprogramming gene expression and altering the number of eggs. In response, a change in the DNA methylation profile of hepatocytes could occurs, modulating the extent of hepatic granuloma. To investigate this hypothesis, we used the EBi3-/- murine (Mus musculus) model of S. mansoni infection and evaluated changes in new and maintenance DNA methylation profiles in the liver after 55 days of infection. We evaluated expression of epigenetic genes and genes linked to histone deubiquitination in male and female S. mansoni worms. Comparing TET expression with DNMT expression indicated that DNA demethylation exceeds methylation in knockout infected and uninfected mice and in wild-type infected and uninfected mice. S. mansoni infection provokes activation of demethylation in EBi3-/-I mice (knockout infected). EBi3-/-C (knockout uninfected) mice present intrinsically higher DNA methylation than WTC (control uninfected) mice. EBi3-/-I mice show decreased hepatic damage considering volume and reduced number of granulomas compared to WTI mice; the absence of IL27 and IL35 pathways decreases the Th1 response resulting in minor liver damage. S. mansoni males and females recovered from EBi3-/-I mice have reduced expression of a deubiquitinating enzyme gene, orthologs of which target histones and affect chromatin state. SmMBD and SmHDAC1 expression levels are downregulated in male and female parasites recovered from EBi3-/-, leading to epigenetic gene downregulation in S. mansoni. Changes to the immunological background thus induce epigenetic changes in hepatic tissues and alterations in S. mansoni gene expression, which attenuate liver symptoms in the acute phase of schistosomiasis.


Subject(s)
Epigenesis, Genetic , Minor Histocompatibility Antigens/genetics , Receptors, Cytokine/genetics , Schistosomiasis mansoni/immunology , Animals , DNA Methylation , Female , Gene Expression Regulation/immunology , Liver/metabolism , Liver/parasitology , Male , Mice , Mice, Knockout , MicroRNAs , RNA, Helminth/genetics , RNA, Helminth/metabolism , RNA, Long Noncoding/genetics , RNA, Long Noncoding/metabolism , Schistosoma mansoni/immunology , Schistosomiasis mansoni/parasitology
4.
PLoS One ; 13(7): e0200494, 2018.
Article in English | MEDLINE | ID: mdl-29995964

ABSTRACT

The first integrative approach using sequences of two genes (18S and 28S rRNA) plus morphological and life history traits, was explored in Pharyngodonidae nematodes parasitic in reptiles. Additionally, first genetic characterization of Parapharyngodon bainae and new data on its morphology are given. This approach evaluated the phylogenetic relationships among genera within Pharyngodonidae, as well as the importance of their diagnostic morphological features. Specimens of P. bainae were collected from faecal pellets of the lizard Tropidurus torquatus in the State of Minas Gerais, Brazil. Nematodes were fixed for scanning electron microscopy and molecular procedures. Morphological observations revealed the accurate structures of cephalic end, of cloacal region in males, of vulva and eggs. Phylogenetic reconstructions were based upon four datasets: aligned sequences of the 18S, of the 28S, of both concatenated genes and of combined morphological and molecular datasets. Bayesian inference and maximum likelihood were performed to infer the phylogenies of molecular datasets and maximum parsimony to infer that of all-combined data. Pharyngodonid parasites of reptiles seem to configure two general monophyletic lineages, as previously assertions. Results also showed the monophyly of Spauligodon, Skrjabinodon and Parapharyngodon, as well as the clear separation between the latter and Thelandros. Combination of datasets improved nodal supports. Analysis of the all-combined datasets revealed the importance of vulval position and egg morphology as phylogenetic informative traits. However, characters of male caudal morphology appear as are highly homoplastic, and seem to be product of convergent evolution or multiple losses of ancestral traits. The closely-related Thelandros and Parapharyngodon are kept valid and their diagnosis should be based upon the position of the operculum in eggs (terminal or subterminal, respectively). Some inconsistencies in the scarce molecular and morphological databases were noted. Thus, new genetic data is required for further conclusions and current database must be evaluated with attention.


Subject(s)
Lizards/parasitology , Oxyuriasis/genetics , Oxyuroidea , RNA, Helminth/genetics , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 28S/genetics , Animals , Databases, Genetic , Female , Male , Oxyuroidea/classification , Oxyuroidea/genetics
5.
Parasitol Int ; 67(1): 4-12, 2018 Feb.
Article in English | MEDLINE | ID: mdl-28939534

ABSTRACT

A new genus of dactylogyrid monogeneans (Ancyrocephalinae), Paracosmetocleithrum n. gen., is erected to accommodate P. trachydorasi n. sp. from Trachydoras paraguayensis (Siluriformes: Doradidae) in the Upper Paraná River basin, Brazil. The new genus differs from Neotropical dactylogyrids in the presence of a well-developed ornamentation in the middle portion of the ventral bar, and a sclerotized patch on the surface of the dorsal bar with an inconspicuous medial process that possesses two submedial projections arising from the tapered ends of this patch. In addition, Demidospermus rhinelepisi n. sp. is described from Rhinelepis aspera (Siluriformes: Loricariidae). The new species, which is the fifth species of the genus described from loricariids, can be differentiated from congeners by the possession of a sclerotized patch attached to the middle portion of the ventral bar, and by morphology of the accessory piece, which presents broad ends, tapering in the centre, rounded proximal end, distal end folding on both sides with folds extending to approximately ¾ of the accessory piece length. Molecular data on both new species are also provided and species composition of Demidospermus, recently revealed as polyphyletic by molecular studies including the present one, is discussed.


Subject(s)
Catfishes , Fish Diseases/epidemiology , Fish Diseases/parasitology , Trematoda/classification , Trematode Infections/veterinary , Animals , Brazil/epidemiology , Gills/parasitology , Phylogeny , RNA, Helminth/genetics , RNA, Ribosomal, 28S/genetics , Species Specificity , Trematoda/anatomy & histology , Trematoda/genetics , Trematoda/physiology , Trematode Infections/epidemiology , Trematode Infections/parasitology
6.
Int J Parasitol ; 48(3-4): 275-285, 2018 03.
Article in English | MEDLINE | ID: mdl-29258830

ABSTRACT

Trichinella spiralis infection in skeletal muscle culminates with nurse cell formation. The participation of excretory-secretory products of the muscle larvae has been implicated in this process through different studies performed in infected muscle and the muscle cell line C2C12. In this work, we developed primary myoblast cultures to analyse the changes induced by excretory-secretory products of the muscle larvae in muscle cells. Microarray analyses revealed expression changes in muscle cell differentiation, proliferation, cytoskeleton organisation, cell motion, transcription, cell cycle, apoptosis and signalling pathways such as MAPK, Jak-STAT, Wnt and PI3K-Akt. Some of these changes were further evaluated by other methodologies such as quantitative real-time PCR (qRT-PCR) and western blot, confirming that excretory-secretory products of the muscle larvae treated primary mouse myoblasts undergo increased proliferation, decreased expression of MHC and up-regulation of α-actin. In addition, changes in relevant muscle transcription factors (Pax7, Myf5 and Mef2c) were observed. Taken together, these results provide new information about how T. spiralis could alter the normal process of skeletal muscle repair after ML invasion to accomplish nurse cell formation.


Subject(s)
Helminth Proteins/metabolism , Myoblasts, Skeletal/parasitology , Trichinella spiralis/metabolism , Actins/genetics , Actins/metabolism , Animals , Blotting, Western , Cell Proliferation , Cells, Cultured , Cytoskeleton/metabolism , Cytoskeleton/parasitology , DNA, Helminth/genetics , DNA, Helminth/metabolism , Electrophoresis, Polyacrylamide Gel , Fluorescent Antibody Technique, Indirect , Gene Expression , Hindlimb , Larva/metabolism , Luminescence , Mice , Mice, Inbred BALB C , Microscopy, Confocal , Muscle Fibers, Skeletal/physiology , Muscle, Skeletal/cytology , Myoblasts, Skeletal/metabolism , RNA, Helminth/genetics , RNA, Helminth/isolation & purification , Real-Time Polymerase Chain Reaction , Signal Transduction/physiology , Tissue Array Analysis , Trichinella spiralis/genetics
7.
PLoS One ; 12(6): e0178829, 2017.
Article in English | MEDLINE | ID: mdl-28622369

ABSTRACT

Once inside a vertebrate host after infection, individual schistosomula of the parasite Schistosoma mansoni find a new and complex environment, which requires quick adjustments for survival, such as those that allow it to avoid the innate immune response of the host. Thus, it is very important for the parasite to remain within the skin after entering the host for a period of about 3 days, at which time it can then reach the venous system, migrate to the lungs and, by the end of eighth day post-infection, it reach the portal venous system, while undergoing minimal changes in morphology. However, after just a few days in the portal blood system, the parasite experiences an extraordinary increase in biomass and significant morphological alterations. Therefore, determining the constituents of the portal venous system that may trigger these changes that causes the parasite to consolidate its development inside the vertebrate host, thus causing the disease schistosomiasis, is essential. The present work simulated the conditions found in the portal venous system of the vertebrate host by exposing schistosomula of S. mansoni to in vitro culture in the presence of portal serum of the hamster, Mesocricetus auratus. Two different incubation periods were evaluated, one of 3 hours and one of 12 hours. These time periods were used to mimic the early contact of the parasite with portal serum during the course of natural infection. As a control, parasites were incubated in presence of hamster peripheral serum, in order to compare gene expression signatures between the two conditions. The mRNA obtained from parasites cultured under both conditions were submitted to a whole transcriptome library preparation and sequenced with a next generation platform. On average, nearly 15 million reads were produced per sample and, for the purpose of gene expression quantification, only reads mapped to one location of the transcriptome were considered. After statistical analysis, we found 103 genes differentially expressed by schistosomula cultured for 3 hours and 12 hours in the presence of hamster portal serum. After the subtraction of a second list of genes, also differentially expressed between schistosomula cultured for 3 hours and 12 hours in presence of peripheral serum, a set of 58 genes was finally established. This pattern was further validated for a subset of 17 genes, by measuring gene expression through quantitative real time polymerase chain reaction (qPCR). Processes that were activated by the portal serum stimulus include response to stress, membrane transport, protein synthesis and folding/degradation, signaling, cytoskeleton arrangement, cell adhesion and nucleotide synthesis. Additionally, a smaller number of genes down-regulated under the same condition act on cholinergic signaling, inorganic cation and organic anion membrane transport, cell adhesion and cytoskeleton arrangement. Considering the role of these genes in triggering processes that allow the parasite to quickly adapt, escape the immune response of the host and start maturation into an adult worm after contact with the portal serum, this work may point to unexplored molecular targets for drug discovery and vaccine development against schistosomiasis.


Subject(s)
Gene Expression Regulation/drug effects , RNA, Helminth , RNA, Messenger , Schistosoma mansoni , Sequence Analysis, RNA/methods , Serum/chemistry , Transcriptome/drug effects , Animals , Cricetinae , Mesocricetus , RNA, Helminth/biosynthesis , RNA, Helminth/genetics , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Schistosoma mansoni/genetics , Schistosoma mansoni/metabolism
8.
Vet Parasitol ; 242: 14-21, 2017 Aug 15.
Article in English | MEDLINE | ID: mdl-28606318

ABSTRACT

Arapaima gigas, a fish with a high market value, has been farmed in different localities within Brazil. Among its parasites, adults of Goezia spinulosa are reported to cause ulcers in the stomach and to result in the death of farmed fingerlings. Due to the veterinary importance of this nematode in cultured arapaimas, an integrative taxonomic study is proposed, combining morphological, ultrastructural and genetic profiles of this parasite. The fish were obtained from semi-intensive fish farming in Acre State, Brazil. The fish measured 7-42cm in total length and the intensity of infection was 1-60 parasites per fish. The site of infection was mainly the stomach. Morphological and ultrastructural analyses of G. spinulosa showed the importance of its spiny body in firmly attaching the worm to the gastric mucosa, resulting in lesions, ulcers and deep gastric perforations of the stomach wall. New sequences for partial 18S rDNA, ITS1, 5.8S and ITS2 rDNA, partial 28S rDNA, cox1 mtDNA and for cox2 mtDNA are presented. Phylogenetic reconstructions based on the partial 18S and 28S rDNA shows species of Goezia occur in a clade well separated from other genera in both analyses. Both the partial 18S and 28S rDNA genes represented good genetic markers for distinguishing genera of the Raphidascarididae, with exception of Hysterothylacium. This integrated taxonomic study produced a robust profile for G. spinulosa that will aid the diagnosis of both adults and larval stages from arapaimas and possible intermediate hosts.


Subject(s)
Fish Diseases/parasitology , Nematoda/classification , Nematode Infections/veterinary , Animals , Brazil/epidemiology , DNA, Helminth/genetics , Female , Fish Diseases/epidemiology , Fishes , Male , Nematoda/genetics , Nematoda/ultrastructure , Nematode Infections/epidemiology , Nematode Infections/parasitology , Phylogeny , RNA, Helminth/genetics , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 28S/genetics
9.
Int J Parasitol ; 47(10-11): 643-653, 2017 09.
Article in English | MEDLINE | ID: mdl-28526608

ABSTRACT

MicroRNAs (miRNAs) are small non-coding RNAs that have emerged as important regulators of gene expression and perform critical functions in development and disease. In spite of the increased interest in miRNAs from helminth parasites, no information is available on miRNAs from Taenia solium, the causative agent of cysticercosis, a neglected disease affecting millions of people worldwide. Here we performed a comprehensive analysis of miRNAs from Taenia crassiceps, a laboratory model for T. solium studies, and identified miRNAs in the T. solium genome. Moreover, we analysed the effect of praziquantel, one of the two main drugs used for cysticercosis treatment, on the miRNA expression profile of T. crassiceps cysticerci. Using small RNA-seq and two independent algorithms for miRNA prediction, as well as northern blot validation, we found transcriptional evidence of 39 miRNA loci in T. crassiceps. Since miRNAs were mapped to the T. solium genome, these miRNAs are considered common to both parasites. The miRNA expression profile of T. crassiceps was biased to the same set of highly expressed miRNAs reported in other cestodes. We found a significant altered expression of miR-7b under praziquantel treatment. In addition, we searched for miRNAs predicted to target genes related to drug response. We performed a detailed target prediction for miR-7b and found genes related to drug action. We report an initial approach to study the effect of sub-lethal drug treatment on miRNA expression in a cestode parasite, which provides a platform for further studies of miRNA involvement in drug effects. The results of our work could be applied to drug development and provide basic knowledge of cysticercosis and other neglected helminth infections.


Subject(s)
MicroRNAs/genetics , Praziquantel/pharmacology , RNA, Helminth/genetics , Taenia/genetics , Animals , Anthelmintics/pharmacology , Gene Expression Regulation/physiology
10.
Exp Parasitol ; 177: 98-103, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28457995

ABSTRACT

RNA interference is a well established and widely used reverse genetic tool available for gene functional studies in trematodes. This technique requires the use of nonrelevant double-stranded RNA as control. However, several authors have reported inconsistencies associated with RNAi. We used RNASeq to analyze genes affected by nonspecific dsRNA exposure. We found only few genes presenting altered expression in schistosomula exposed to GFP or mCherry nonspecific-dsRNAs, most of them encoding uncharacterized proteins. Correlation analysis revealed that there are more differences among biological replicates, than due to treatment with nonspecific controls. These observations are of key relevance to other RNAi gene function assessment in other organisms.


Subject(s)
Genes, Helminth/physiology , RNA Interference , RNA, Double-Stranded/genetics , RNA, Helminth/genetics , Schistosoma mansoni/genetics , Animals , Biomphalaria/parasitology , Gene Expression , Helminth Proteins/genetics , Principal Component Analysis , Schistosomiasis mansoni/parasitology , Schistosomiasis mansoni/transmission , Sequence Analysis, RNA
11.
Ticks Tick Borne Dis ; 8(4): 623-625, 2017 06.
Article in English | MEDLINE | ID: mdl-28442240

ABSTRACT

Rhipicephalus sanguineus sensu lato (s.l.) ticks act as intermediate host for a range of canine vector-borne pathogens, including nematodes ranked in the genus Cercopithifilaria. Though being the object of several studies in the last years, information on the distribution of these parasites is still lacking. In this study, the occurrence of Cercopithifilaria spp. was investigated in on-host population of R. sanguineus s.l. collected from naturally infested dogs. Ticks (n=1906, including one larva, 294 nymphs and 1611 adults) were sampled on domestic dogs (n=155) living in the municipality of Garanhuns (northeastern Brazil). Tick collections (n=36) were performed every 8 days, from October 2015 to June 2016. Filarioid larvae detected at tick dissection were morphologically and morphometrically identified at species level. At the end of the study, only R. sanguineus s.l. ticks were collected, with the highest number in January 2016 (n=254) and the lowest in June 2016 (n=26). Out of 1906 dissected ticks, 2.68% (51/1906) harboured Cercopithifilaria bainae larvae, whose identification was molecularly confirmed, with a nucleotide identity of 99% with C. bainae. Data here reported indicate that, in the study area, R. sanguineus s.l. is the predominant tick infesting domestic dogs. Accordingly, these animals are at a high risk of C. bainae infection.


Subject(s)
Dog Diseases/epidemiology , Filarioidea/physiology , Rhipicephalus sanguineus/parasitology , Tick Infestations/veterinary , Animals , Brazil/epidemiology , Dog Diseases/parasitology , Dogs , Female , Filarioidea/genetics , Larva/growth & development , Larva/parasitology , Male , Nymph/growth & development , Nymph/parasitology , RNA, Helminth/genetics , RNA, Ribosomal/genetics , Rhipicephalus sanguineus/growth & development , Tick Infestations/epidemiology , Tick Infestations/parasitology
12.
Parasitol Res ; 115(1): 51-62, 2016 Jan.
Article in English | MEDLINE | ID: mdl-25982569

ABSTRACT

Species of trematodes belonging to the genus Drepanocephalus are intestinal parasites of piscivorous birds, primarily cormorants (Phalachrocorax spp.), and are widely reported in the Americas. During a 4-year malacological study conducted on an urban lake in Brazil, 27-collar-spined echinostome cercariae were found in 1665/15,459 (10.7 %) specimens of Biomphalaria straminea collected. The cercariae were identified as Drepanocephalus spp. by sequencing the 18S (SSU) rDNA, ITS1/5.8S rDNA/ITS2 (ITS), 28S (LSU) rDNA region, cytochrome oxidase subunit 1 (CO1), and nicotinamide adenine dinucleotide dehydrogenase subunit 1 (ND1) markers. In experimental life cycle studies, metacercariae developed in laboratory-reared guppies (Poecilia reticulata); however, attempts to infect birds and rodents were unsuccessful. Two closely related morphotypes of cercariae were characterized. One species, identified by molecular markers as a genetic variant of Drepanocephalus auritus (99.9 % similarity at SSU, ITS, LSU; 97.2 % at CO1; 95.8 % at ND1), differs slightly from an archived North American isolate of this species also sequenced as part of this study. A second species, putatively identified as Drepanocephalus sp., has smaller cercariae and demonstrates significant differences from D. auritus at the CO1 (11.0 %) and ND1 (13.6 %) markers. Aspects related to the morphological taxonomic identification of 27-collar-spined echinostome metacercariae are briefly discussed. This is the first report of the involvement of molluscs of the genus Biomphalaria in the transmission of Drepanocephalus and the first report of D. auritus in South America.


Subject(s)
Biomphalaria/parasitology , Echinostomatidae/classification , Animals , Bird Diseases/parasitology , Bird Diseases/transmission , Birds , Brazil , Cercaria/anatomy & histology , Cercaria/genetics , Chickens , DNA, Ribosomal/chemistry , Echinostomatidae/anatomy & histology , Echinostomatidae/genetics , Electron Transport Complex IV/genetics , Genetic Markers , Lakes , Life Cycle Stages , Mice , Poecilia , RNA, Helminth/genetics , Sequence Analysis, DNA , Trematode Infections/transmission , Trematode Infections/veterinary
13.
Vet Parasitol ; 212(3-4): 431-4, 2015 Sep 15.
Article in English | MEDLINE | ID: mdl-26321134

ABSTRACT

Angiostrongylus costaricensis is the zoonotic agent of abdominal angiostrongyliasis in several countries in North and South America. Rodents are recognized as the main definitive hosts of A. costaricensis, but other wildlife species can develop patent infections. Although, several human cases have been described in the literature, the role of domestic animals in the epidemiology of the infection is not clear. Here we review the literature available on A. costaricensis in mammals and describe the first confirmed fatal case of abdominal angiostrongyliasis in a 4-month-old dog, presented with intestinal perforation, peritonitis and faecal shedding of first-stage larvae. Parasite identity was confirmed by morphology, histology and molecular characterization of target genes. This is the first record of a naturally infected dog acting as a definitive host for A. costaricensis. These data suggest that dogs may potentially spread this parasite in urbanized areas.


Subject(s)
Angiostrongylus/isolation & purification , Dog Diseases/parasitology , Strongylida Infections/veterinary , Animals , Dogs , Fatal Outcome , Feces/parasitology , Male , RNA, Helminth/genetics , RNA, Ribosomal/genetics , RNA, Ribosomal, 18S/genetics , Species Specificity , Strongylida Infections/parasitology
14.
Parasit Vectors ; 8: 83, 2015 Feb 06.
Article in English | MEDLINE | ID: mdl-25656283

ABSTRACT

BACKGROUND: microRNAs (miRNAs), a class of small non-coding RNAs, are key regulators of gene expression at post-transcriptional level and play essential roles in fundamental biological processes such as development and metabolism. The particular developmental and metabolic characteristics of cestode parasites highlight the importance of studying miRNA gene regulation in these organisms. Here, we perform a comprehensive analysis of miRNAs in the parasitic cestode Echinococcus canadensis G7, one of the causative agents of the neglected zoonotic disease cystic echinococcosis. METHODS: Small RNA libraries from protoscoleces and cyst walls of E. canadensis G7 and protoscoleces of E. granulosus sensu stricto G1 were sequenced using Illumina technology. For miRNA prediction, miRDeep2 core algorithm was used. The output list of candidate precursors was manually curated to generate a high confidence set of miRNAs. Differential expression analysis of miRNAs between stages or species was estimated with DESeq. Expression levels of selected miRNAs were validated using poly-A RT-qPCR. RESULTS: In this study we used a high-throughput approach and found transcriptional evidence of 37 miRNAs thus expanding the miRNA repertoire of E. canadensis G7. Differential expression analysis showed highly regulated miRNAs between life cycle stages, suggesting a role in maintaining the features of each developmental stage or in the regulation of developmental timing. In this work we characterize conserved and novel Echinococcus miRNAs which represent 30 unique miRNA families. Here we confirmed the remarkable loss of conserved miRNA families in E. canadensis, reflecting their low morphological complexity and high adaptation to parasitism. CONCLUSIONS: We performed the first in-depth study profiling of small RNAs in the zoonotic parasite E. canadensis G7. We found that miRNAs are the preponderant small RNA silencing molecules, suggesting that these small RNAs could be an essential mechanism of gene regulation in this species. We also identified both parasite specific and divergent miRNAs which are potential biomarkers of infection. This study will provide valuable information for better understanding of the complex biology of this parasite and could help to find new potential targets for therapy and/or diagnosis.


Subject(s)
Echinococcosis/veterinary , Echinococcus/genetics , MicroRNAs/genetics , RNA, Helminth/genetics , Sheep Diseases/parasitology , Swine Diseases/parasitology , Animals , Base Sequence , Echinococcosis/parasitology , Echinococcus/isolation & purification , Echinococcus/metabolism , High-Throughput Nucleotide Sequencing , MicroRNAs/metabolism , Molecular Sequence Data , RNA, Helminth/metabolism , Sequence Analysis, RNA , Sheep , Swine
15.
PLoS Negl Trop Dis ; 9(12): e0004334, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26719891

ABSTRACT

BACKGROUND: Schistosomiasis is one of the most prevalent parasitic diseases worldwide and is a public health problem. Schistosoma mansoni is the most widespread species responsible for schistosomiasis in the Americas, Middle East and Africa. Adult female worms (mated to males) release eggs in the hepatic portal vasculature and are the principal cause of morbidity. Comparative separate transcriptomes of female and male adult worms were previously assessed with using microarrays and Serial Analysis of Gene Expression (SAGE), thus limiting the possibility of finding novel genes. Moreover, the egg transcriptome was analyzed only once with limited bacterially cloned cDNA libraries. METHODOLOGY/PRINCIPAL FINDINGS: To compare the gene expression of S. mansoni eggs, females, and males, we performed RNA-Seq on these three parasite forms using 454/Roche technology and reconstructed the transcriptome using Trinity de novo assembly. The resulting contigs were mapped to the genome and were cross-referenced with predicted Smp genes and H3K4me3 ChIP-Seq public data. For the first time, we obtained separate, unbiased gene expression profiles for S. mansoni eggs and female and male adult worms, identifying enriched biological processes and specific enriched functions for each of the three parasite forms. Transcripts with no match to predicted genes were analyzed for their protein-coding potential and the presence of an encoded conserved protein domain. A set of 232 novel protein-coding genes with putative functions related to reproduction, metabolism, and cell biogenesis was detected, which contributes to the understanding of parasite biology. CONCLUSIONS/SIGNIFICANCE: Large-scale RNA-Seq analysis using de novo assembly associated with genome-wide information for histone marks in the vicinity of gene models constitutes a new approach to transcriptome analysis that has not yet been explored in schistosomes. Importantly, all data have been consolidated into a UCSC Genome Browser search- and download-tool (http://schistosoma.usp.br/). This database provides new ways to explore the schistosome genome and transcriptome and will facilitate molecular research on this important parasite.


Subject(s)
Schistosoma mansoni/genetics , Schistosomiasis mansoni/parasitology , Transcriptome , Africa , Animals , Base Sequence , Female , Gene Expression Profiling , Male , Middle East , Molecular Sequence Data , RNA, Helminth/chemistry , RNA, Helminth/genetics , Sequence Analysis, RNA
16.
PLoS One ; 9(7): e102228, 2014.
Article in English | MEDLINE | ID: mdl-25014071

ABSTRACT

In recent years, a significant amount of sequence data (both genomic and transcriptomic) for Echinococcus spp. has been published, thereby facilitating the analysis of genes expressed during a specific stage or involved in parasite development. To perform a suitable gene expression quantification analysis, the use of validated reference genes is strongly recommended. Thus, the aim of this work was to identify suitable reference genes to allow reliable expression normalization for genes of interest in Echinococcus granulosus sensu stricto (s.s.) (G1) and Echinococcus ortleppi upon induction of the early pre-adult development. Untreated protoscoleces (PS) and pepsin-treated protoscoleces (PSP) from E. granulosus s.s. (G1) and E. ortleppi metacestode were used. The gene expression stability of eleven candidate reference genes (ßTUB, NDUFV2, RPL13, TBP, CYP-1, RPII, EF-1α, ßACT-1, GAPDH, ETIF4A-III and MAPK3) was assessed using geNorm, Normfinder, and RefFinder. Our qPCR data showed a good correlation with the recently published RNA-seq data. Regarding expression stability, EF-1α and TBP were the most stable genes for both species. Interestingly, ßACT-1 (the most commonly used reference gene), and GAPDH and ETIF4A-III (previously identified as housekeeping genes) did not behave stably in our assay conditions. We propose the use of EF-1α as a reference gene for studies involving gene expression analysis in both PS and PSP experimental conditions for E. granulosus s.s. and E. ortleppi. To demonstrate its applicability, EF-1α was used as a normalizer gene in the relative quantification of transcripts from genes coding for antigen B subunits. The same EF-1α reference gene may be used in studies with other Echinococcus sensu lato species. This report validates suitable reference genes for species of class Cestoda, phylum Platyhelminthes, thus providing a foundation for further validation in other epidemiologically important cestode species, such as those from the Taenia genus.


Subject(s)
Echinococcus granulosus/genetics , Echinococcus/genetics , Genes, Essential , Genes, Helminth , Life Cycle Stages/genetics , RNA, Helminth/genetics , RNA, Messenger/genetics , Animals , Cattle , Echinococcosis/parasitology , Echinococcus/growth & development , Echinococcus/isolation & purification , Echinococcus granulosus/growth & development , Echinococcus granulosus/isolation & purification , Gene Expression Profiling , Gene Expression Regulation, Developmental , Lipoproteins/genetics , Peptide Elongation Factor 1/genetics
17.
J Parasitol ; 100(3): 296-301, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24433062

ABSTRACT

Mecistocirrus digitatus is a hematophagous abomasal nematode which causes significant blood and production losses in cattle. The objectives of the present study were to: (1) report the reappearance of M. digitatus in cattle from the Mexican tropics using microscopy, scanning electron microscopy (SEM), and molecular identification, and (2) determine the prevalence of M. digitatus in slaughtered adult cattle from the Mexican tropics. Gastroinestinal nematodes (GIN) were recovered from the abomasum of an 8-yr-old cow (Holstein × Zebu) previously diagnosed with Johne's disease. Of 1,254 GIN, 98.8% were identified as M. digitatus and 1.2% as Haemonchus sp. SEM was used to identify ultrastructure features of M. digitatus (oral cavity, cervical papillae, bursa, bursa lobes papillae, male spicules, anus, and female vulva). A conventional PCR method was used to corroborate the morphological findings. The prevalence of adult cattle infected with M. digitatus and Haemonchus sp., determined from 68 adult cattle from different grazing tropical herds, was 38.2% and 8.8%, respectively. Ninety-eight percent of animals infected with M. digitatus presented lesions in their abomasum such as mucosal inflammation, hemorrhage, and ulcers; some of them had necrosis. The current reappearance of M. digitatus in a Mexican herd suggests the possibility of an underestimated prevalence of this nematode amongst grazing cattle.


Subject(s)
Cattle Diseases/parasitology , Trichostrongyloidea/isolation & purification , Trichostrongyloidiasis/veterinary , Abomasum/parasitology , Animals , Cattle , Cattle Diseases/epidemiology , DNA, Helminth/chemistry , DNA, Helminth/isolation & purification , Female , Haemonchiasis/epidemiology , Haemonchiasis/parasitology , Haemonchiasis/veterinary , Male , Mexico/epidemiology , Microscopy, Electron, Scanning/veterinary , Prevalence , RNA, Helminth/genetics , Sequence Alignment/veterinary , Trichostrongyloidea/genetics , Trichostrongyloidea/ultrastructure , Trichostrongyloidiasis/epidemiology , Trichostrongyloidiasis/parasitology , Tropical Climate
18.
J Parasitol ; 100(3): 331-7, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24428724

ABSTRACT

Auriculostoma totonacapanensis n. sp. is described from the Mexican tetra, Astyanax mexicanus (Actinopterygii, Characidae) collected in a tributary creek of the Bobos River in Filipinas, Veracruz, Mexico. The new species is set apart from all congeners by the combination of some morphological characters such as the testes position (oblique in most specimens), the ventral to oral sucker ratio (1:1.2 × 1:1.1), the cirrus sac originating at the ovarian region, and by having vitelline follicles not confluent in the posttesticular region. Auriculostoma totonacapanensis n. sp. closely resembles Auriculostoma platense (Szidat, 1954) Scholz, Aguirre-Macedo, and Choudhury, 2004 and Auriculostoma diagonale Curran, Tkach and Overstreet, 2011 by possessing oblique testes; however, it differs from both species by possessing a genital pore located at level of the cecal bifurcation and by having vitelline follicles extending anteriorly up to the cecal bifurcation level, instead of a genital pore located between the anterior margin of the ventral sucker and cecal bifurcation, and vitelline follicles extending anteriorly to the mid level of the esophagus as in A. platense or to the pharynx level as in A. diagonale. Additionally, the new species differs from A. diagonale by having vitelline follicles not confluent or scarcely confluent in the posttesticular region rather than extensively confluent. Scanning electron microscopy micrographs of the new species demonstrated the presence of a single pair of muscular lobes on either side of the oral sucker, with a broad base, stretching from the ventrolateral to the dorsolateral side. Maximum parsimony and Bayesian inference analyses of the 28S rRNA gene sequences placed A. totonacapanensis as sister species of Auriculostoma astyanace Scholz, Aguirre-Macedo, and Choudhury, 2004 . Nucleotide variation between A. totonacapanensis and A. astyanace was 2.0% and 3.6% for the 28S rRNA gene and ITS2 sequences, respectively. Sequence variation for the 28S rRNA gene between Auriculostoma spp. and 7 other genera of Allocreadiidae ranged from 2.4 to 6.3%.


Subject(s)
Characidae/parasitology , Fish Diseases/parasitology , Trematoda/classification , Trematode Infections/veterinary , Animals , Cecum/parasitology , DNA, Helminth/chemistry , DNA, Helminth/isolation & purification , DNA, Ribosomal/chemistry , Fish Diseases/epidemiology , Intestines/parasitology , Mexico/epidemiology , Microscopy, Electron, Scanning/veterinary , Phylogeny , Prevalence , RNA, Helminth/genetics , RNA, Ribosomal, 28S/genetics , Rivers , Trematoda/genetics , Trematoda/ultrastructure , Trematode Infections/epidemiology , Trematode Infections/parasitology
19.
Parasitology ; 140(9): 1085-95, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23673212

ABSTRACT

SMYB1 is a Schistosoma mansoni protein highly similar to members of the Y-box binding protein family. Similar to other homologues, SMYB1 is able to bind double- and single-stranded DNA, as well as RNA molecules. The characterization of proteins involved in the regulation of gene expression in S. mansoni is of great importance for the understanding of molecular events that control morphological and physiological changes in this parasite. Here we demonstrate that SMYB1 is located in the cytoplasm of cells from different life-cycle stages of S. mansoni, suggesting that this protein is probably acting in mRNA metabolism in the cytoplasm and corroborating previous findings from our group that showed its ability to bind RNA. Protein-protein interactions are important events in all biological processes, since most proteins execute their functions through large supramolecular structures. Yeast two-hybrid screenings using SMYB1 as bait identified a partner in S. mansoni similar to the SmD3 protein of Drosophila melanogaster (SmRNP), which is important in the assembly of small nuclear ribonucleoprotein complexes. Also, pull-down assays were conducted using immobilized GST-SMYB1 proteins and confirmed the SMYB1-SmRNP interaction. The interaction of SMYB1 with a protein involved in mRNA processing suggests that it may act in processes such as turnover, transport and stabilization of RNA molecules.


Subject(s)
Helminth Proteins/metabolism , RNA, Helminth/metabolism , RNA, Messenger/metabolism , Schistosoma mansoni/metabolism , Animals , Antibodies, Helminth/blood , Antibodies, Helminth/immunology , Biological Transport , Cytoplasm/metabolism , Female , Gene Library , Helminth Proteins/genetics , Immunohistochemistry , Male , RNA, Helminth/genetics , RNA, Messenger/genetics , Rabbits , Schistosoma mansoni/genetics , Two-Hybrid System Techniques
20.
Mol Phylogenet Evol ; 68(2): 176-84, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23567022

ABSTRACT

Acanthocephalans of the family Polymorphidae Meyer, 1931 are obligate endoparasites with complex life cycles. These worms use vertebrates (marine mammals, fish-eating birds and waterfowl) as definitive hosts and invertebrates (amphipods, decapods and euphausiids) as intermediate hosts to complete their life cycle. Polymorphidae has a wordwide distribution, containing 12 genera, with approximately 127 species. The family is diagnosed by having a spinose trunk, bulbose proboscis, double-walled proboscis receptacle, and usually four to eight tubular cement glands. To conduct a phylogenetic analysis, in the current study sequences of the small (18S) and large-subunit (28S) ribosomal RNA, and cytochrome c oxidase subunit 1 (cox 1) were generated for 27 taxa representing 10 of 12 genera of Polymorphidae, plus three additional species of acanthocephalans that were used as outgroups. Maximum likelihood (ML), maximum parsimony (MP), and Bayesian analyses were conducted on a combined nuclear rRNA (18S+28S) data set and on a concatenated dataset of nuclear plus one mitochondrial gene (18S+28S+cox 1). Phylogenetic analyses inferred with the concatenated dataset of three genes support the monophyly of nine genera (Andracantha, Corynosoma, Bolbosoma, Profilicollis, Pseudocorynosoma, Southwellina, Arhythmorhynchus, Hexaglandula and Ibirhynchus). However, the four sampled species of Polymorphus were nested within several clades, indicating that these species do not share a common ancestor, requiring further taxonomic revision using phylogenetic systematics, and reexamination of morphological and ecological data. By mapping definitive and intermediate host association onto the resulting cladogram, we observe that aquatic birds were the ancestral definitive hosts for the family with a secondary colonization and diversification to marine mammals. Whereas amphipods were ancestral intermediate hosts and that the association with decapods represent episodes of secondary colonization that arose several times during the evolutionary history of the family. Our results are useful to start testing hypothesis about the evolutionary history of this highly diverse family of acanthocephalans.


Subject(s)
Acanthocephala/genetics , Genes, Helminth , Genes, Mitochondrial , Phylogeny , Animals , Bayes Theorem , Electron Transport Complex IV/genetics , Evolution, Molecular , Likelihood Functions , Models, Genetic , Multilocus Sequence Typing , RNA, Helminth/genetics , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 28S/genetics
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