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1.
J Chem Phys ; 160(18)2024 May 14.
Article En | MEDLINE | ID: mdl-38726933

We investigate how electronic excitations and subsequent dissipative dynamics in the water soluble chlorophyll-binding protein (WSCP) are connected to features in two-dimensional (2D) electronic spectra, thereby comparing results from our theoretical approach with experimental data from the literature. Our calculations rely on third-order response functions, which we derived from a second-order cumulant expansion of the dissipative dynamics involving the partial ordering prescription, assuming a fast vibrational relaxation in the potential energy surfaces of excitons. Depending on whether the WSCP complex containing a tetrameric arrangement of pigments composed of two dimers with weak excitonic coupling between them binds the chlorophyll variant Chl a or Chl b, the resulting linear absorption and circular dichroism spectra and particularly the 2D spectra exhibit substantial differences in line shapes. These differences between Chl a WSCP and Chl b WSCP cannot be explained by the slightly modified excitonic couplings within the two variants. In the case of Chl a WSCP, the assumption of equivalent dimer subunits facilitates a reproduction of substantial features from the experiment by the calculations. In contrast, for Chl b WSCP, we have to assume that the sample, in addition to Chl b dimers, contains a small but distinct fraction of chemically modified Chl b pigments. The existence of such Chl b derivates has been proposed by Pieper et al. [J. Phys. Chem. B 115, 4042 (2011)] based on low-temperature absorption and hole-burning spectroscopy. Here, we provide independent evidence.


Chlorophyll Binding Proteins , Chlorophyll , Water , Chlorophyll/chemistry , Water/chemistry , Chlorophyll Binding Proteins/chemistry , Spectrum Analysis/methods , Solubility , Circular Dichroism
2.
PLoS One ; 19(5): e0302638, 2024.
Article En | MEDLINE | ID: mdl-38718016

Hydroponics offers a promising approach to help alleviate pressure on food security for urban residents. It requires minimal space and uses less resources, but management can be complex. Microscale Smart Hydroponics (MSH) systems leverage IoT systems to simplify hydroponics management for home users. Previous work in nutrient management has produced systems that use expensive sensing methods or utilized lower cost methods at the expense of accuracy. This study presents a novel inexpensive nutrient management system for MSH applications that utilises a novel waterproofed, IoT spectroscopy sensor (AS7265x) in a transflective application. The sensor is submerged in a hydroponic solution to monitor the nutrients and MSH system predicts the of nutrients in the hydroponic solution and recommends an adjustment quantity in mL. A three-phase model building process was carried out resulting in significant MLR models for predicting the mL, with an R2 of 0.997. An experiment evaluated the system's performance using the trained models with a 30-day grow of lettuce in a real-world setting, comparing the results of the management system to a control group. The sensor system successfully adjusted and maintained nutrient levels, resulting in plant growth that outperformed the control group. The results of the models in actual deployment showed a strong, significant correlation of 0.77 with the traditional method of measuring the electrical conductivity of nutrients. This novel nutrient management system has the potential to transform the way nutrients are monitored in hydroponics. By simplifying nutrient management, this system can encourage the adoption of hydroponics, contributing to food security and environmental sustainability.


Hydroponics , Nutrients , Hydroponics/methods , Nutrients/analysis , Spectrum Analysis/methods , Lactuca/growth & development , Food Security
3.
PLoS One ; 19(5): e0303219, 2024.
Article En | MEDLINE | ID: mdl-38805455

The mixing of cotton seeds of different cultivars and qualities can lead to differences in growth conditions and make field management difficult. In particular, except for yield loss, it can also lead to inconsistent cotton quality and poor textile product quality, causing huge economic losses to farmers and the cotton processing industry. However, traditional cultivar identification methods for cotton seeds are time-consuming, labor-intensive, and cumbersome, which cannot meet the needs of modern agriculture and modern cotton processing industry. Therefore, there is an urgent need for a fast, accurate, and non-destructive method for identifying cotton seed cultivars. In this study, hyperspectral images (397.32 nm-1003.58 nm) of five cotton cultivars, namely Jinke 20, Jinke 21, Xinluzao 64, Xinluzao 74, and Zhongmiansuo 5, were captured using a Specim IQ camera, and then the average spectral information of seeds of each cultivar was used for spectral analysis, aiming to estab-lish a cotton seed cultivar identification model. Due to the presence of many obvious noises in the < 400 nm and > 1000 nm regions of the collected spectral data, spectra from 400 nm to 1000 nm were selected as the representative spectra of the seed samples. Then, various denoising techniques, including Savitzky-Golay (SG), Standard Normal Variate (SNV), and First Derivative (FD), were applied individually and in combination to improve the quality of the spectra. Additionally, a successive projections algorithm (SPA) was employed for spectral feature selection. Based on the full-band spectra, a Partial Least Squares-Discriminant Analysis (PLS-DA) model was established. Furthermore, spectral features and textural features were fused to create Random Forest (RF), Convolutional Neural Network (CNN), and Extreme Learning Machine (ELM) identification models. The results showed that: (1) The SNV-FD preprocessing method showed the optimal denoising performance. (2) SPA highlighted the near-infrared region (800-1000 nm), red region (620-700 nm), and blue-green region (420-570 nm) for identifying cotton cultivar. (3) The fusion of spectral features and textural features did not consistently improve the accuracy of all modeling strategies, suggesting the need for further research on appropriate modeling strategies. (4) The ELM model had the highest cotton cultivar identification accuracy, with an accuracy of 100% for the training set and 98.89% for the test set. In conclusion, this study successfully developed a highly accurate cotton seed cultivar identification model (ELM model). This study provides a new method for the rapid and non-destructive identification of cotton seed cultivars, which will help ensure the cultivar consistency of seeds used in cotton planting, and improve the overall quality and yield of cotton.


Gossypium , Seeds , Seeds/growth & development , Spectrum Analysis/methods
4.
Sci Rep ; 14(1): 12173, 2024 May 28.
Article En | MEDLINE | ID: mdl-38806551

Carotenoids play a role in preventing and impeding the progression of atherosclerotic cardiovascular diseases (ASCVDs) through their anti-oxidative effects. This study evaluated associations between ASCVD risk and skin carotenoid (SC) levels, reflecting dietary carotenoid intake. Participants' ASCVD risk was assessed using the Hisayama ASCVD risk prediction model, and SC levels were measured through a reflection spectroscope (Veggie Meter). The associations between high ASCVD risk and SC levels were analyzed using logistic regression analysis and a restricted cubic spline (RCS) model. A total of 1130 men and women (mean age: 56 years) from participants who underwent a health examination in Seirei Center for Health Promotion and Prevention Medicine in 2019 and 2022 were analyzed. Of these, 4.6% had moderate or high ASCVD risk. Mean SC values were 236, 315, 376, 447, and 606 in quintile Q1 to Q5, respectively. The adjusted odds ratios (95% confidence intervals) of SC quintile for moderate- or high-risk ASCVD was 0.24 (0.12-0.51) in Q5 (495 ≤), 0.42 (0.23-0.77) in Q4, 0.50 (0.29-0.88) in Q3, and 0.68 (0.41-1.12) in Q2 compared to Q1 (< 281). High SC values continuously showed non-linear inverse association with moderate- or high-risk for ASCVD in Japanese adults. Non-invasive SC measurements may be a good indicator for recommending carotenoids to prevent cardiovascular disease.


Atherosclerosis , Carotenoids , Skin , Humans , Female , Male , Carotenoids/metabolism , Carotenoids/analysis , Middle Aged , Cross-Sectional Studies , Japan/epidemiology , Skin/metabolism , Skin/chemistry , Atherosclerosis/epidemiology , Aged , Adult , Cardiovascular Diseases/epidemiology , Risk Factors , Spectrum Analysis/methods , East Asian People
5.
Biointerphases ; 19(3)2024 May 01.
Article En | MEDLINE | ID: mdl-38738942

Planar supported lipid bilayers (PSLBs) are an ideal model for the study of lipid membrane structures and dynamics when using sum-frequency vibrational spectroscopy (SFVS). In this paper, we describe the construction of asymmetric PSLBs and the basic SFVS theory needed to understand and make measurements on these membranes. Several examples are presented, including the determination of phospholipid orientation and measuring phospholipid transmembrane translocation (flip-flop).


Lipid Bilayers , Spectrum Analysis , Lipid Bilayers/chemistry , Spectrum Analysis/methods , Vibration , Phospholipids/chemistry , Membrane Lipids/chemistry
6.
J Chem Phys ; 160(18)2024 May 14.
Article En | MEDLINE | ID: mdl-38716851

We studied the origin of the vibrational signatures in the sum-frequency generation (SFG) spectrum of fibrillar collagen type I in the carbon-hydrogen stretching regime. For this purpose, we developed an all-reflective, laser-scanning SFG microscope with minimum chromatic aberrations and excellent retention of the polarization state of the incident beams. We performed detailed SFG measurements of aligned collagen fibers obtained from rat tail tendon, enabling the characterization of the magnitude and polarization-orientation dependence of individual tensor elements Xijk2 of collagen's nonlinear susceptibility. Using the three-dimensional atomic positions derived from published crystallographic data of collagen type I, we simulated its Xijk2 elements for the methylene stretching vibration and compared the predicted response with the experimental results. Our analysis revealed that the carbon-hydrogen stretching range of the SFG spectrum is dominated by symmetric stretching modes of methylene bridge groups on the pyrrolidine rings of the proline and hydroxyproline residues, giving rise to a dominant peak near 2942 cm-1 and a shoulder at 2917 cm-1. Weak asymmetric stretches of the methylene bridge group of glycine are observed in the region near 2870 cm-1, whereas asymmetric CH2-stretching modes on the pyrrolidine rings are found in the 2980 to 3030 cm-1 range. These findings help predict the protein's nonlinear optical properties from its crystal structure, thus establishing a connection between the protein structure and SFG spectroscopic measurements.


Carbon , Collagen Type I , Hydrogen , Hydrogen/chemistry , Carbon/chemistry , Collagen Type I/chemistry , Rats , Animals , Spectrum Analysis/methods
7.
PLoS One ; 19(5): e0303018, 2024.
Article En | MEDLINE | ID: mdl-38722909

We study the relationship between reflectance and the degree of linear polarization of radiation that bounces off the surface of an unvarnished oil painting. We design a VNIR-SWIR (400 nm to 2500 nm) polarimetric reflectance imaging spectroscopy setup that deploys unpolarized light and allows us to estimate the Stokes vector at the pixel level. We observe a strong negative correlation between the S0 component of the Stokes vector (which can be used to represent the reflectance) and the degree of linear polarization in the visible interval (average -0.81), while the correlation is weaker and varying in the infrared range (average -0.50 in the NIR range between 780 and 1500 nm, and average -0.87 in the SWIR range between 1500 and 2500 nm). By tackling the problem with multi-resolution image analysis, we observe a dependence of the correlation on the local complexity of the surface. Indeed, we observe a general trend that strengthens the negative correlation for the effect of artificial flattening provoked by low image resolutions.


Paintings , Spectrum Analysis/methods
8.
Sci Rep ; 14(1): 11915, 2024 05 24.
Article En | MEDLINE | ID: mdl-38789499

Speckle contrast optical spectroscopy (SCOS) is an emerging camera-based technique that can measure human cerebral blood flow (CBF) with high signal-to-noise ratio (SNR). At low photon flux levels typically encountered in human CBF measurements, camera noise and nonidealities could significantly impact SCOS measurement SNR and accuracy. Thus, a guide for characterizing, selecting, and optimizing a camera for SCOS measurements is crucial for the development of next-generation optical devices for monitoring human CBF and brain function. Here, we provide such a guide and illustrate it by evaluating three commercially available complementary metal-oxide-semiconductor cameras, considering a variety of factors including linearity, read noise, and quantization distortion. We show that some cameras that are well-suited for general intensity imaging could be challenged in accurately quantifying spatial contrast for SCOS. We then determine the optimal operating parameters for the preferred camera among the three and demonstrate measurement of human CBF with this selected low-cost camera. This work establishes a guideline for characterizing and selecting cameras as well as for determining optimal parameters for SCOS systems.


Cerebrovascular Circulation , Signal-To-Noise Ratio , Spectrum Analysis , Humans , Cerebrovascular Circulation/physiology , Spectrum Analysis/methods , Spectrum Analysis/instrumentation , Brain/diagnostic imaging , Brain/physiology , Brain/blood supply
9.
Talanta ; 275: 126196, 2024 Aug 01.
Article En | MEDLINE | ID: mdl-38705018

We have developed an innovative optical emission spectrometry imaging device integrating a diode laser for sample introduction and an atmospheric pressure plasma based on dielectric barrier discharge for atomization and excitation. By optimizing the device parameters and ensuring appropriate leaf moisture, we achieved effective imaging with a lateral resolution as low as 50 µm. This device allows for tracking the accumulation of Cd and related species such as K, Zn, and O2+∙, in plant leaves exposed to different Cd levels and culture times. The results obtained are comparable to established in-lab imaging and quantitative methods. With its features of compact construction, minimal sample preparation, ease of operation, and low limit of detection (0.04 µg/g for Cd), this novel methodology shows promise as an in-situ elemental imaging tool for interdisciplinary applications.


Atmospheric Pressure , Cadmium , Plant Leaves , Cadmium/analysis , Cadmium/chemistry , Plant Leaves/chemistry , Plasma Gases/chemistry , Zinc/chemistry , Zinc/analysis , Spectrum Analysis/methods , Potassium/analysis , Potassium/blood , Potassium/chemistry
10.
J Chem Phys ; 160(17)2024 May 07.
Article En | MEDLINE | ID: mdl-38748024

Chromones are a class of naturally occurring compounds, renowned for their diverse biological activities with significant relevance in medicine and biochemistry. This study marks the first analysis of rotational spectra of both the chromone monomer and its monohydrate through Fourier transform microwave spectroscopy. The observation of nine mono-substituted 13C isotopologues facilitated a semi-experimental determination of the equilibrium structure of the chromone monomer. In the case of chromone monohydrate, two distinct isomers were identified, each characterized by a combination of O-H⋯O and C-H⋯O hydrogen bonds involving the chromone's carbonyl group. This study further delved into intermolecular non-covalent interactions, employing different theoretical approaches. The relative population ratio of the two identified isomers was estimated to be about 2:1 within the supersonic jet.


Chromones , Chromones/chemistry , Hydrogen Bonding , Molecular Conformation , Spectrum Analysis/methods , Microwaves , Molecular Structure
11.
Food Chem ; 450: 139322, 2024 Aug 30.
Article En | MEDLINE | ID: mdl-38613963

This paper develops a new hybrid, automated, and non-invasive approach by combining hyper-spectral imaging, Savitzky-Golay (SG) Filter, Principal Components Analysis (PCA), Machine Learning (ML) classifiers/regressors, and stacking generalization methods to detect sugar in honey. First, the 32 different sugar concentration levels in honey were predicted using various ML regressors. Second, the six ranges of sugar were classified using various classifiers. Third, the 11 types of honey and 100% sugar were classified using classifiers. The stacking model (STM) obtained R2: 0.999, RMSE: 0.493 ml (v/v), RPD: 40.2, a 10-fold average R2: 0.996 and RMSE: 1.27 ml (v/v) for predicting 32 sugar concentrations. The STM achieved a Matthews Correlation Coefficient (MCC) of 99.7% and a Kappa score of 99.7%, a 10-fold average MCC of 98.9% and a Kappa score of 98.9% for classifying the six sugar ranges and 12 categories of honey types and a sugar.


Food Contamination , Honey , Sugars , Honey/analysis , Food Contamination/analysis , Sugars/analysis , Sugars/chemistry , Machine Learning , Principal Component Analysis , Spectrum Analysis/methods , Carbohydrates/chemistry , Carbohydrates/analysis
12.
Food Chem ; 449: 139171, 2024 Aug 15.
Article En | MEDLINE | ID: mdl-38604026

Aflatoxins, harmful substances found in peanuts, corn, and their derivatives, pose significant health risks. Addressing this, the presented research introduces an innovative MSGhostDNN model, merging contrastive learning with multi-scale convolutional networks for precise aflatoxin detection. The method significantly enhances feature discrimination, achieving an impressive 97.87% detection accuracy with a pre-trained model. By applying Grad-CAM, it further refines the model to identify key wavelengths, particularly 416 nm, and focuses on 40 key wavelengths for optimal performance with 97.46% accuracy. The study also incorporates a task dimensionality reduction approach for continuous learning, allowing effective ongoing aflatoxin spectrum monitoring in peanuts and corn. This approach not only boosts aflatoxin detection efficiency but also sets a precedent for rapid online detection of similar toxins, offering a promising solution to mitigate the health risks associated with aflatoxin exposure.


Aflatoxin B1 , Arachis , Food Contamination , Zea mays , Aflatoxin B1/analysis , Food Contamination/analysis , Arachis/chemistry , Zea mays/chemistry , Neural Networks, Computer , Spectrum Analysis/methods , Machine Learning
13.
Anal Chem ; 96(18): 7038-7046, 2024 May 07.
Article En | MEDLINE | ID: mdl-38575850

Laser-induced breakdown spectroscopy (LIBS) imaging continues to gain strength as an influential bioanalytical technique, showing intriguing potential in the field of clinical analysis. This is because hyperspectral LIBS imaging allows for rapid, comprehensive elemental analysis, covering elements from major to trace levels consistently year after year. In this study, we estimated the potential of a multivariate spectral data treatment approach based on a so-called convex envelope method to detect exotic elements (whether they are minor or in trace amounts) in biopsy tissues of patients with occupational exposure-related diseases. More precisely, we have developed an approach called Interesting Features Finder (IFF), which initially allowed us to identify unexpected elements without any preconceptions, considering only the set of spectra contained in a LIBS hyperspectral data cube. This task is, in fact, almost impossible with conventional chemometric tools, as it entails identifying a few exotic spectra among several hundred thousand others. Once this detection was performed, a second approach based on correlation was used to locate their distribution in the biopsies. Through this unique data analysis pipeline to processing massive LIBS spectroscopic data, it was possible to detect and locate exotic elements such as tin and rhodium in a patient's tissue section, ultimately leading to a possible reclassification of their lung condition as an occupational disease. This review will thus demonstrate the potential of this new diagnostic tool based on LIBS imaging in addressing the shortcomings of approaches developed thus far. The proposed data processing approach naturally transcends this specific framework and can be leveraged across various domains of analytical chemistry, where the detection of rare events is concealed within extensive data sets.


Lung Diseases , Humans , Biopsy , Lung Diseases/diagnosis , Lung Diseases/pathology , Occupational Diseases/diagnosis , Occupational Diseases/pathology , Lasers , Spectrum Analysis/methods , Lung/pathology , Lung/chemistry , Lung/diagnostic imaging
14.
Water Res ; 257: 121673, 2024 Jun 15.
Article En | MEDLINE | ID: mdl-38688189

Wetlands cover only around 6 % of the Earth's land surface, and are recognized as one of the three major ecosystems, alongside forests and oceans. The ecological structure and function of karst wetlands are unique due to the influence of geologic structure. At present, the unclear spectral morphology of surface water in karst wetlands poses a significant challenge in remote sensing estimation of non-optically active water quality parameters (NAWQPs). This study proposed a novel multi-scale spectral morphology feature extraction (MSFE) method to insight to spectral characteristics in surface water of karst wetlands, and further screen the sensitive features of NAWQPs. Then we constructed three remote sensing inversion strategies for NAWQPs (TN, TP, NH3_N, DO), including direct estimation, indirect estimation, and auxiliary estimation. Finally, we constructed a novel pH-based hierarchical analysis framework (pH_HA) to thoroughly explore the influence of alkalinity-biased characteristics of karst water on the spectral domain of NAWQPs and its estimation accuracy using in-situ hyperspectral data, respectively. We found that the spectral characteristics of karst waters at the first reflectance peak (580 nm) differed significantly from other water body types. The MSFE successfully captured the sensitive spectral domains for NAWQPs, and focused on between 500 and 600 nm and 900-960 nm. The sensitive features captured by MSFE improved estimation accuracy of NAWQPs (R2 >0.9). Direct estimation presented more stable performance compared to the auxiliary estimation (average RMSE of 0.366 mg/L), and the auxiliary estimation model further improved the retrieval accuracy of TN compared to direct estimation model (R2 increasing from 0.43 to 0.56). The novel hierarchical framework clearly revealed the notable changes in the sensitive spectral domains of NAWQPs under different pH values, and enabled more precise determination of spectral subdomains of NAWQPs, and identified the optimal spectral features. The pH_HA framework effectively improved the estimation accuracy of NAWQPs (R2 increased from 0.514 to over 0.9), and the estimation accuracies (R2) of four NAWQPs were all more than 0.9 when the pH value was over 8.5. Our works provide an effective approach for monitoring water quality in karst wetlands.


Wetlands , Environmental Monitoring/methods , Water Quality , Remote Sensing Technology , Spectrum Analysis/methods , Water/chemistry
15.
J Acoust Soc Am ; 155(4): 2670-2686, 2024 Apr 01.
Article En | MEDLINE | ID: mdl-38639562

Recently, ultrasound transit time spectroscopy (UTTS) was proposed as a promising method for bone quantitative ultrasound measurement. Studies have showed that UTTS could estimate the bone volume fraction and other trabecular bone structure in ultrasonic through-transmission measurements. The goal of this study was to explore the feasibility of UTTS to be adapted in ultrasonic backscatter measurement and further evaluate the performance of backscattered ultrasound transit time spectrum (BS-UTTS) in the measurement of cancellous bone density and structure. First, taking ultrasonic attenuation into account, the concept of BS-UTTS was verified on ultrasonic backscatter signals simulated from a set of scatterers with different positions and intensities. Then, in vitro backscatter measurements were performed on 26 bovine cancellous bone specimens. After a logarithmic compression of the BS-UTTS, a linear fitting of the log-compressed BS-UTTS versus ultrasonic propagated distance was performed and the slope and intercept of the fitted line for BS-UTTS were determined. The associations between BS-UTTS parameters and cancellous bone features were analyzed using simple linear regression. The results showed that the BS-UTTS could make an accurate deconvolution of the backscatter signal and predict the position and intensity of the simulated scatterers eliminating phase interference, even the simulated backscatter signal was with a relatively low signal-to-noise ratio. With varied positions and intensities of the scatterers, the slope of the fitted line for the log-compressed BS-UTTS versus ultrasonic propagated distance (i.e., slope of BS-UTTS for short) yield a high agreement (r2 = 99.84%-99.96%) with ultrasonic attenuation in simulated backscatter signal. Compared with the high-density cancellous bone, the low-density specimen showed more abundant backscatter impulse response in the BS-UTTS. The slope of BS-UTTS yield a significant correlation with bone mineral density (r = 0.87; p < 0.001), BV/TV (r = 0.87; p < 0.001), and cancellous bone microstructures (r up to 0.87; p < 0.05). The intercept of BS-UTTS was also significantly correlated with bone densities (r = -0.87; p < 0.001) and trabecular structures (|r|=0.43-0.80; p < 0.05). However, the slope of the BS-UTTS underestimated attenuation when measurements were performed experimentally. In addition, a significant non-linear relationship was observed between the measured attenuation and the attenuation estimated by the slope of the BS-UTTS. This study demonstrated that the UTTS method could be adapted to ultrasonic backscatter measurement of cancellous bone. The derived slope and intercept of BS-UTTS could be used in the measurement of bone density and microstructure. The backscattered ultrasound transit time spectroscopy might have potential in the diagnosis of osteoporosis in the clinic.


Bone and Bones , Cancellous Bone , Animals , Cattle , Cancellous Bone/diagnostic imaging , Scattering, Radiation , Ultrasonography/methods , Bone and Bones/diagnostic imaging , Bone Density/physiology , Spectrum Analysis/methods
16.
ACS Nano ; 18(18): 11644-11654, 2024 May 07.
Article En | MEDLINE | ID: mdl-38653474

Nanophotonic devices excel at confining light into intense hot spots of electromagnetic near fields, creating exceptional opportunities for light-matter coupling and surface-enhanced sensing. Recently, all-dielectric metasurfaces with ultrasharp resonances enabled by photonic bound states in the continuum (BICs) have unlocked additional functionalities for surface-enhanced biospectroscopy by precisely targeting and reading out the molecular absorption signatures of diverse molecular systems. However, BIC-driven molecular spectroscopy has so far focused on end point measurements in dry conditions, neglecting the crucial interaction dynamics of biological systems. Here, we combine the advantages of pixelated all-dielectric metasurfaces with deep learning-enabled feature extraction and prediction to realize an integrated optofluidic platform for time-resolved in situ biospectroscopy. Our approach harnesses high-Q metasurfaces specifically designed for operation in a lossy aqueous environment together with advanced spectral sampling techniques to temporally resolve the dynamic behavior of photoswitchable lipid membranes. Enabled by a software convolutional neural network, we further demonstrate the real-time classification of the characteristic cis and trans membrane conformations with 98% accuracy. Our synergistic sensing platform incorporating metasurfaces, optofluidics, and deep learning reveals exciting possibilities for studying multimolecular biological systems, ranging from the behavior of transmembrane proteins to the dynamic processes associated with cellular communication.


Artificial Intelligence , Surface Properties , Spectrum Analysis/methods , Membrane Lipids/chemistry , Deep Learning
17.
Methods Mol Biol ; 2790: 333-353, 2024.
Article En | MEDLINE | ID: mdl-38649579

This chapter provides a methodology for evaluating plant health and leaf characteristics using spectral reflectance. It provides a step-by-step guide to using spectrometers for high-resolution point measurements of leaf spectral reflectance and multispectral imaging for capturing spatial data, emphasizing the importance of consistent measurement conditions. The chapter further explores the intricacies of multispectral imaging, including calibration, data collection, and image processing. Finally, this chapter delves into the application of various spectral indices for the quantification of key traits such as pigment content, the status of the xanthophyll cycle, water content, and how to identify spectral regions of interest for further research and development. Serving as a guide for researchers and practitioners in plant science, this chapter provides a straightforward framework for plant health assessment using spectral reflectance.


Plant Leaves , Spectrum Analysis , Plant Leaves/chemistry , Spectrum Analysis/methods , Image Processing, Computer-Assisted/methods , Water/chemistry , Calibration , Plants , Xanthophylls
18.
J Biomed Opt ; 29(4): 045006, 2024 Apr.
Article En | MEDLINE | ID: mdl-38665316

Significance: During breast-conserving surgeries, it is essential to evaluate the resection margins (edges of breast specimen) to determine whether the tumor has been removed completely. In current surgical practice, there are no methods available to aid in accurate real-time margin evaluation. Aim: In this study, we investigated the diagnostic accuracy of diffuse reflectance spectroscopy (DRS) combined with tissue classification models in discriminating tumorous tissue from healthy tissue up to 2 mm in depth on the actual resection margin of in vivo breast tissue. Approach: We collected an extensive dataset of DRS measurements on ex vivo breast tissue and in vivo breast tissue, which we used to develop different classification models for tissue classification. Next, these models were used in vivo to evaluate the performance of DRS for tissue discrimination during breast conserving surgery. We investigated which training strategy yielded optimum results for the classification model with the highest performance. Results: We achieved a Matthews correlation coefficient of 0.76, a sensitivity of 96.7% (95% CI 95.6% to 98.2%), a specificity of 90.6% (95% CI 86.3% to 97.9%) and an area under the curve of 0.98 by training the optimum model on a combination of ex vivo and in vivo DRS data. Conclusions: DRS allows real-time margin assessment with a high sensitivity and specificity during breast-conserving surgeries.


Breast Neoplasms , Breast , Margins of Excision , Mastectomy, Segmental , Spectrum Analysis , Humans , Female , Breast Neoplasms/surgery , Breast Neoplasms/diagnostic imaging , Mastectomy, Segmental/methods , Spectrum Analysis/methods , Breast/diagnostic imaging , Breast/surgery , Sensitivity and Specificity
19.
Biomed Phys Eng Express ; 10(3)2024 Apr 26.
Article En | MEDLINE | ID: mdl-38626737

A novel fiber optic biosensor was purposed for a new approach to monitor amyloid beta protein fragment 1-42 (Aß42) for Alzheimer's Disease (AD) early detection. The sensor was fabricated by etching a part of fiber from single mode fiber loop in pure hydrofluoric acid solution and utilized as a Local Optical Refractometer (LOR) to monitor the change Aß42 concentration in Artificial Cerebrospinal Fluid (ACSF). The Fiber Loop Ringdown Spectroscopy (FLRDS) technique is an ultra-sensitive measurement technique with low-cost, high sensitivity, real-time measurement, continuous measurement and portability features that was utilized with a fiber optic sensor for the first time for the detection of a biological signature in an ACSF environment. Here, the measurement is based on the total optical loss detection when specially fabricated sensor heads were immersed into ACSF solutions with and without different concentrations of Aß42 biomarkers since the bulk refractive index change was performed. Baseline stability and the reference ring down times of the sensor head were measured in the air as 0.87% and 441.6µs ± 3.9µs, respectively. Afterward, the total optical loss of the system was measured when the sensor head was immersed in deionized water, ACSF solution, and ACSF solutions with Aß42 in different concentrations. The lowest Aß42 concentration of 2 ppm was detected by LOR. Results showed that LOR fabricated by single-mode fibers for FLRDS system design are promising candidates to be utilized as fiber optic biosensors after sensor head modification and have a high potential for early detection applications of not only AD but possibly also several fatal diseases such as diabetes and cancer.


Alzheimer Disease , Amyloid beta-Peptides , Biosensing Techniques , Early Diagnosis , Fiber Optic Technology , Peptide Fragments , Spectrum Analysis , Alzheimer Disease/diagnosis , Amyloid beta-Peptides/analysis , Humans , Fiber Optic Technology/methods , Peptide Fragments/analysis , Biosensing Techniques/methods , Spectrum Analysis/methods , Optical Fibers , Biomarkers/analysis , Refractometry , Equipment Design
20.
Food Chem ; 448: 139210, 2024 Aug 01.
Article En | MEDLINE | ID: mdl-38569408

The detection of heavy metals in tea infusions is important because of the potential health risks associated with their consumption. Existing highly sensitive detection methods pose challenges because they are complicated and time-consuming. In this study, we developed an innovative and simple method using Ag nanoparticles-modified resin (AgNPs-MR) for pre-enrichment prior to laser-induced breakdown spectroscopy for the simultaneous analysis of Cr (III), Cu (II), and Pb (II) in tea infusions. Signal enhancement using AgNPs-MR resulted in amplification with limits of detection of 0.22 µg L-1 for Cr (III), 0.33 µg L-1 for Cu (II), and 1.25 µg L-1 for Pb (II). Quantitative analyses of these ions in infusions of black tea from various brands yielded recoveries ranging from 83.3% to 114.5%. This method is effective as a direct and highly sensitive technique for precisely quantifying trace concentrations of heavy metals in tea infusions.


Chromium , Copper , Food Contamination , Lead , Metal Nanoparticles , Silver , Tea , Tea/chemistry , Chromium/analysis , Lead/analysis , Silver/chemistry , Metal Nanoparticles/chemistry , Copper/analysis , Food Contamination/analysis , Spectrum Analysis/methods , Lasers , Camellia sinensis/chemistry , Metals, Heavy/analysis , Limit of Detection
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