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1.
Nucleic Acids Res ; 49(18): 10477-10492, 2021 10 11.
Article in English | MEDLINE | ID: mdl-34508355

ABSTRACT

ADP-ribosylation is a modification that targets a variety of macromolecules and regulates a diverse array of important cellular processes. ADP-ribosylation is catalysed by ADP-ribosyltransferases and reversed by ADP-ribosylhydrolases. Recently, an ADP-ribosyltransferase toxin termed 'DarT' from bacteria, which is distantly related to human PARPs, was shown to modify thymidine in single-stranded DNA in a sequence specific manner. The antitoxin of DarT is the macrodomain containing ADP-ribosylhydrolase DarG, which shares striking structural homology with the human ADP-ribosylhydrolase TARG1. Here, we show that TARG1, like DarG, can reverse thymidine-linked DNA ADP-ribosylation. We find that TARG1-deficient human cells are extremely sensitive to DNA ADP-ribosylation. Furthermore, we also demonstrate the first detection of reversible ADP-ribosylation on genomic DNA in vivo from human cells. Collectively, our results elucidate the impact of DNA ADP-ribosylation in human cells and provides a molecular toolkit for future studies into this largely unknown facet of ADP-ribosylation.


Subject(s)
Adenosine Diphosphate Ribose/metabolism , DNA/metabolism , Thiolester Hydrolases/physiology , Adenosine Diphosphate Ribose/chemistry , Bacterial Toxins/metabolism , Cell Line , DNA Repair , DNA Replication , DNA, Single-Stranded/metabolism , Humans , Thiolester Hydrolases/chemistry , Thymidine/metabolism
2.
Nat Chem Biol ; 17(4): 438-447, 2021 04.
Article in English | MEDLINE | ID: mdl-33707782

ABSTRACT

Many biochemical reactions require controlled recruitment of proteins to membranes. This is largely regulated by posttranslational modifications. A frequent one is S-acylation, which consists of the addition of acyl chains and can be reversed by poorly understood acyl protein thioesterases (APTs). Using a panel of computational and experimental approaches, we dissect the mode of action of the major cellular thioesterase APT2 (LYPLA2). We show that soluble APT2 is vulnerable to proteasomal degradation, from which membrane binding protects it. Interaction with membranes requires three consecutive steps: electrostatic attraction, insertion of a hydrophobic loop and S-acylation by the palmitoyltransferases ZDHHC3 or ZDHHC7. Once bound, APT2 is predicted to deform the lipid bilayer to extract the acyl chain bound to its substrate and capture it in a hydrophobic pocket to allow hydrolysis. This molecular understanding of APT2 paves the way to understand the dynamics of APT2-mediated deacylation of substrates throughout the endomembrane system.


Subject(s)
Cell Membrane/metabolism , Thiolester Hydrolases/metabolism , Thiolester Hydrolases/physiology , Acylation/physiology , HeLa Cells , Humans , Lipoylation/physiology , Protein Processing, Post-Translational , Protein Transport/physiology , Proteins/metabolism , Substrate Specificity , Thiolester Hydrolases/genetics
3.
Cancer Res ; 80(22): 5076-5088, 2020 11 15.
Article in English | MEDLINE | ID: mdl-33004351

ABSTRACT

Approximately 70% of breast cancers express estrogen receptor α (ERα) and depend on this key transcriptional regulator for proliferation and differentiation. While patients with this disease can be treated with targeted antiendocrine agents, drug resistance remains a significant issue, with almost half of patients ultimately relapsing. Elucidating the mechanisms that control ERα function may further our understanding of breast carcinogenesis and reveal new therapeutic opportunities. Here, we investigated the role of deubiquitinases (DUB) in regulating ERα in breast cancer. An RNAi loss-of-function screen in breast cancer cells targeting all DUBs identified USP11 as a regulator of ERα transcriptional activity, which was further validated by assessment of direct transcriptional targets of ERα. USP11 expression was induced by estradiol, an effect that was blocked by tamoxifen and not observed in ERα-negative cells. Mass spectrometry revealed a significant change to the proteome and ubiquitinome in USP11-knockdown (KD) cells in the presence of estradiol. RNA sequencing in LCC1 USP11-KD cells revealed significant suppression of cell-cycle-associated and ERα target genes, phenotypes that were not observed in LCC9 USP11-KD, antiendocrine-resistant cells. In a breast cancer patient cohort coupled with in silico analysis of publicly available cohorts, high expression of USP11 was significantly associated with poor survival in ERα-positive (ERα+) patients. Overall, this study highlights a novel role for USP11 in the regulation of ERα activity, where USP11 may represent a prognostic marker in ERα+ breast cancer. SIGNIFICANCE: A newly identified role for USP11 in ERα transcriptional activity represents a novel mechanism of ERα regulation and a pathway to be exploited for the management of ER-positive breast cancer.


Subject(s)
Breast Neoplasms/metabolism , Deubiquitinating Enzymes/physiology , Estrogen Receptor alpha/metabolism , Thiolester Hydrolases/physiology , Trans-Activators/physiology , Breast Neoplasms/chemistry , Breast Neoplasms/mortality , Cell Line, Tumor , Deubiquitinating Enzymes/drug effects , Estradiol/pharmacology , Estrogen Antagonists/pharmacology , Estrogen Receptor alpha/genetics , Female , Gene Silencing , Genes, cdc , Humans , Phenotype , Prognosis , Proteome , Tamoxifen/pharmacology , Thiolester Hydrolases/drug effects
4.
Life Sci Alliance ; 3(8)2020 08.
Article in English | MEDLINE | ID: mdl-32636217

ABSTRACT

The mitochondrial deubiquitylase USP30 negatively regulates the selective autophagy of damaged mitochondria. We present the characterisation of an N-cyano pyrrolidine compound, FT3967385, with high selectivity for USP30. We demonstrate that ubiquitylation of TOM20, a component of the outer mitochondrial membrane import machinery, represents a robust biomarker for both USP30 loss and inhibition. A proteomics analysis, on a SHSY5Y neuroblastoma cell line model, directly compares the effects of genetic loss of USP30 with chemical inhibition. We have thereby identified a subset of ubiquitylation events consequent to mitochondrial depolarisation that are USP30 sensitive. Within responsive elements of the ubiquitylome, several components of the outer mitochondrial membrane transport (TOM) complex are prominent. Thus, our data support a model whereby USP30 can regulate the availability of ubiquitin at the specific site of mitochondrial PINK1 accumulation following membrane depolarisation. USP30 deubiquitylation of TOM complex components dampens the trigger for the Parkin-dependent amplification of mitochondrial ubiquitylation leading to mitophagy. Accordingly, PINK1 generation of phospho-Ser65 ubiquitin proceeds more rapidly in cells either lacking USP30 or subject to USP30 inhibition.


Subject(s)
Mitochondria/metabolism , Mitochondrial Proteins/metabolism , Thiolester Hydrolases/metabolism , HeLa Cells , Humans , Membrane Transport Proteins/metabolism , Mitochondria/physiology , Mitochondrial Membranes/physiology , Mitochondrial Precursor Protein Import Complex Proteins , Mitochondrial Proteins/genetics , Mitochondrial Proteins/physiology , Mitophagy/drug effects , Mitophagy/genetics , Neural Stem Cells/metabolism , Protein Kinases/genetics , Protein Kinases/metabolism , Receptors, Cell Surface/metabolism , Thiolester Hydrolases/physiology , Ubiquitin/metabolism , Ubiquitin-Protein Ligases/genetics , Ubiquitin-Protein Ligases/metabolism , Ubiquitination
5.
Mol Cell Proteomics ; 18(11): 2244-2261, 2019 11.
Article in English | MEDLINE | ID: mdl-31501224

ABSTRACT

Treatments are emerging for the neuronal ceroid lipofuscinoses (NCLs), a group of similar but genetically distinct lysosomal storage diseases. Clinical ratings scales measure long-term disease progression and response to treatment but clinically useful biomarkers have yet to be identified in these diseases. We have conducted proteomic analyses of brain and cerebrospinal fluid (CSF) from mouse models of the most frequently diagnosed NCL diseases: CLN1 (infantile NCL), CLN2 (classical late infantile NCL) and CLN3 (juvenile NCL). Samples were obtained at different stages of disease progression and proteins quantified using isobaric labeling. In total, 8303 and 4905 proteins were identified from brain and CSF, respectively. We also conduced label-free analyses of brain proteins that contained the mannose 6-phosphate lysosomal targeting modification. In general, we detect few changes at presymptomatic timepoints but later in disease, we detect multiple proteins whose expression is significantly altered in both brain and CSF of CLN1 and CLN2 animals. Many of these proteins are lysosomal in origin or are markers of neuroinflammation, potentially providing clues to underlying pathogenesis and providing promising candidates for further validation.


Subject(s)
Aminopeptidases/physiology , Biomarkers/blood , Biomarkers/cerebrospinal fluid , Brain/metabolism , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/physiology , Lysosomes/metabolism , Membrane Glycoproteins/physiology , Molecular Chaperones/physiology , Neuronal Ceroid-Lipofuscinoses/diagnosis , Serine Proteases/physiology , Thiolester Hydrolases/physiology , Animals , Disease Models, Animal , Female , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Neuronal Ceroid-Lipofuscinoses/blood , Neuronal Ceroid-Lipofuscinoses/cerebrospinal fluid , Proteome/analysis , Tripeptidyl-Peptidase 1
6.
J Immunol ; 203(9): 2388-2400, 2019 11 01.
Article in English | MEDLINE | ID: mdl-31554694

ABSTRACT

Foxp3+ regulatory T (TREG) cells are central mediators in the control of peripheral immune responses. Genome-wide transcriptional profiles show canonical signatures for Foxp3+ TREG cells, distinguishing them from Foxp3- effector T (TEFF) cells. We previously uncovered distinct mRNA translational signatures differentiating CD4+ TEFF and TREG cells through parallel measurements of cytosolic (global) and polysome-associated (translationally enhanced) mRNA levels in both subsets. We show that the mRNA encoding for the ubiquitin-specific peptidase 11 (USP11), a known modulator of TGF-ß signaling, was preferentially translated in TCR-activated TREG cells compared with conventional, murine CD4+ T cells. TGF-ß is a key cytokine driving the induction and maintenance of Foxp3 expression in T cells. We hypothesized that differential translation of USP11 mRNA endows TREG cells with an advantage to respond to TGF-ß signals. In an in vivo mouse model promoting TREG cells plasticity, we found that USP11 protein was expressed at elevated levels in stable TREG cells, whereas ectopic USP11 expression enhanced the suppressive capacity and lineage commitment of these cells in vitro and in vivo. USP11 overexpression in TEFF cells enhanced the activation of the TGF-ß pathway and promoted TREG or TH17, but not Th1, cell differentiation in vitro and in vivo, an effect abrogated by USP11 gene silencing or the inhibition of enzymatic activity. Thus, USP11 potentiates TGF-ß signaling in both TREG and TEFF cells, in turn driving increased suppressive function and lineage commitment in thymic-derived TREG cells and potentiating the TGF-ß-dependent differentiation of TEFF cells to peripherally induced TREG and TH17 cells.


Subject(s)
CD4-Positive T-Lymphocytes/physiology , Forkhead Transcription Factors/physiology , T-Lymphocytes, Regulatory/cytology , Th17 Cells/cytology , Thiolester Hydrolases/physiology , Transforming Growth Factor beta/physiology , Animals , Cell Differentiation , Cell Lineage , Mice , Mice, Inbred C57BL , Mitoxantrone/pharmacology , Signal Transduction/physiology , Smad3 Protein/metabolism , Thiolester Hydrolases/genetics
7.
Hepatology ; 70(2): 496-510, 2019 08.
Article in English | MEDLINE | ID: mdl-30516845

ABSTRACT

In nonalcoholic fatty liver disease (NAFLD), triglycerides accumulate within the liver because the rates of fatty acid accrual by uptake from plasma and de novo synthesis exceed elimination by mitochondrial oxidation and secretion as very low-density lipoprotein (VLDL) triglycerides. Thioesterase superfamily member 2 (Them2) is an acyl-coenzyme A (CoA) thioesterase that catalyzes the hydrolysis of fatty acyl-CoAs into free fatty acids plus CoASH. Them2 is highly expressed in the liver, as well as other oxidative tissues. Mice globally lacking Them2 are resistant to diet-induced obesity and hepatic steatosis, and exhibit improved glucose homeostasis. These phenotypes are attributable, at least in part, to roles of Them2 in the suppression of thermogenesis in brown adipose tissue and insulin signaling in skeletal muscle. To elucidate the hepatic function of Them2, we created mice with liver-specific deletion of Them2 (L-Them2-/- ). Although L-Them2-/- mice were not protected against excess weight gain, hepatic steatosis or glucose intolerance, they exhibited marked decreases in plasma triglyceride and apolipoprotein B100 concentrations. These were attributable to reduced rates of VLDL secretion owing to decreased incorporation of plasma-derived fatty acids into triglycerides. The absence of hepatic steatosis in L-Them2-/- mice fed chow was explained by compensatory increases in rates of fatty acid oxidation and by decreased de novo lipogenesis in high fat-fed mice. Consistent with a role for Them2 in hepatic VLDL secretion, THEM2 levels were increased in livers of obese patients with NAFLD characterized by simple steatosis. Conclusion: Them2 functions in the liver to direct fatty acids toward triglyceride synthesis for incorporation into VLDL particles. When taken together with its functions in brown adipose and muscle, these findings suggest that Them2 is a target for the management of NAFLD and dyslipidemia.


Subject(s)
Fatty Acids/metabolism , Lipoproteins, VLDL/metabolism , Liver/metabolism , Non-alcoholic Fatty Liver Disease/metabolism , Thiolester Hydrolases/physiology , Triglycerides/biosynthesis , Animals , Humans , Male , Mice , Non-alcoholic Fatty Liver Disease/complications , Obesity/complications , Obesity/metabolism , Triglycerides/metabolism
8.
Plant J ; 95(2): 219-232, 2018 07.
Article in English | MEDLINE | ID: mdl-29687516

ABSTRACT

Arbuscular mycorrhiza (AM) fungi establish symbiotic interactions with plants, providing the host plant with minerals, i.e. phosphate, in exchange for organic carbon. Arbuscular mycorrhiza fungi of the order Glomerales produce vesicles which store lipids as an energy and carbon source. Acyl-acyl carrier protein (ACP) thioesterases (Fat) are essential components of the plant plastid-localized fatty acid synthase and determine the chain length of de novo synthesized fatty acids. In addition to the ubiquitous FatA and FatB thioesterases, AM-competent plants contain an additional, AM-specific, FatM gene. Here, we characterize FatM from Lotus japonicus by phenotypically analyzing fatm mutant lines and by studying the biochemical function of the recombinant FatM protein. Reduced shoot phosphate content in fatm indicates compromised symbiotic phosphate uptake due to reduced arbuscule branching, and the fungus shows reduced lipid accumulation accompanied by the occurrence of smaller and less frequent vesicles. Lipid profiling reveals a decrease in mycorrhiza-specific phospholipid forms, AM fungal signature fatty acids (e.g. 16:1ω5, 18:1ω7 and 20:3) and storage lipids. Recombinant FatM shows preference for palmitoyl (16:0)-ACP, indicating that large amounts of 16:0 fatty acid are exported from the plastids of arbuscule-containing cells. Stable isotope labeling with [13 C2 ]acetate showed reduced incorporation into mycorrhiza-specific fatty acids in the fatm mutant. Therefore, colonized cells reprogram plastidial de novo fatty acid synthesis towards the production of extra amounts of 16:0, which is in agreement with previous results that fatty acid-containing lipids are transported from the plant to the fungus.


Subject(s)
Lipid Metabolism , Lotus/metabolism , Mycorrhizae/metabolism , Plant Proteins/physiology , Thiolester Hydrolases/physiology , Fatty Acids/metabolism , Lotus/microbiology , Lotus/physiology , Mycorrhizae/physiology , Plant Proteins/metabolism , Plant Roots/metabolism , Plant Roots/microbiology , Symbiosis/physiology , Thiolester Hydrolases/metabolism
9.
Diabetes ; 66(8): 2112-2123, 2017 08.
Article in English | MEDLINE | ID: mdl-28607105

ABSTRACT

Hepatic acyl-CoA thioesterase 1 (ACOT1) catalyzes the conversion of acyl-CoAs to fatty acids (FAs) and CoA. We sought to determine the role of ACOT1 in hepatic lipid metabolism in C57Bl/6J male mice 1 week after adenovirus-mediated Acot1 knockdown. Acot1 knockdown reduced liver triglyceride (TG) as a result of enhanced TG hydrolysis and subsequent FA oxidation. In vitro experiments demonstrated that Acot1 knockdown led to greater TG turnover and FA oxidation, suggesting that ACOT1 is important for controlling the rate of FA oxidation. Despite increased FA oxidation, Acot1 knockdown reduced the expression of peroxisome proliferator-activated receptor α (PPARα) target genes, whereas overexpression increased PPARα reporter activity, suggesting ACOT1 regulates PPARα by producing FA ligands. Moreover, ACOT1 exhibited partial nuclear localization during fasting and cAMP/cAMP-dependent protein kinase signaling, suggesting local regulation of PPARα. As a consequence of increased FA oxidation and reduced PPARα activity, Acot1 knockdown enhanced hepatic oxidative stress and inflammation. The effects of Acot1 knockdown on PPARα activity, oxidative stress, and inflammation were rescued by supplementation with Wy-14643, a synthetic PPARα ligand. We demonstrate through these results that ACOT1 regulates fasting hepatic FA metabolism by balancing oxidative flux and capacity.


Subject(s)
Fasting/physiology , Fatty Acids/metabolism , Oxidative Coupling , PPAR alpha/metabolism , Thiolester Hydrolases/physiology , Animals , Anticholesteremic Agents/pharmacology , Liver/metabolism , Male , Mice , Mice, Inbred C57BL , Oxidative Stress/drug effects , Oxidative Stress/physiology , Pyrimidines/pharmacology
10.
Trends Endocrinol Metab ; 28(7): 473-484, 2017 07.
Article in English | MEDLINE | ID: mdl-28385385

ABSTRACT

The cellular uptake of free fatty acids (FFA) is followed by esterification to coenzyme A (CoA), generating fatty acyl-CoAs that are substrates for oxidation or incorporation into complex lipids. Acyl-CoA thioesterases (ACOTs) constitute a family of enzymes that hydrolyze fatty acyl-CoAs to form FFA and CoA. Although biochemically and biophysically well characterized, the metabolic functions of these enzymes remain incompletely understood. Existing evidence suggests regulatory roles in controlling rates of peroxisomal and mitochondrial fatty acyl-CoA oxidation, as well as in the subcellular trafficking of fatty acids. Emerging data implicate ACOTs in the pathogenesis of metabolic diseases, suggesting that better understanding their pathobiology could reveal unique targets in the management of obesity, diabetes, and nonalcoholic fatty liver disease.


Subject(s)
Fatty Acids/metabolism , Lipid Metabolism , Thiolester Hydrolases/physiology , Animals , Humans , Lipid Metabolism/genetics , Metabolic Diseases/genetics , Metabolic Diseases/metabolism
11.
Free Radic Biol Med ; 100: 210-222, 2016 11.
Article in English | MEDLINE | ID: mdl-27094585

ABSTRACT

Mitochondrial quality control is central for maintaining a healthy population of mitochondria. Two Parkinson's disease genes, mitochondrial kinase PINK1 and ubiquitin ligase Parkin, degrade damaged mitochondria though mitophagy. In this pathway, PINK1 senses mitochondrial damage and activates Parkin by phosphorylating Parkin and ubiquitin. Activated Parkin then builds ubiquitin chains on damaged mitochondria to tag them for degradation in lysosomes. USP30 deubiquitinase acts as a brake on mitophagy by opposing Parkin-mediated ubiquitination. Human genetic data point to a role for mitophagy defects in neurodegenerative diseases. This review highlights the molecular mechanisms of the mitophagy pathway and the recent advances in the understanding of mitophagy in vivo.


Subject(s)
Mitochondrial Proteins/metabolism , Mitophagy , Protein Kinases/metabolism , Thiolester Hydrolases/metabolism , Ubiquitin-Protein Ligases/metabolism , Humans , Mitochondrial Proteins/physiology , Parkinson Disease/metabolism , Parkinson Disease/physiopathology , Protein Kinases/physiology , Thiolester Hydrolases/physiology , Ubiquitin-Protein Ligases/physiology
12.
Gene ; 572(1): 49-56, 2015 Nov 01.
Article in English | MEDLINE | ID: mdl-26143114

ABSTRACT

Ubiquitin-specific protease 22 (USP22) can regulate the cell cycle and apoptosis in many cancer cell types, while it is still unclear whether the deubiquitinating enzyme activity of USP22 is necessary for these processes. As little is known about the impact of USP22 on the growth of HeLa cell, we observed whether USP22 can effectively regulate HeLa cell growth as well as the necessity of deubiquitinating enzyme activity for these processes in HeLa cell. In this study, we demonstrate that USP22 can regulate cell cycle but not apoptosis in HeLa cell. The deubiquitinating enzyme activity of USP22 is necessary for this process as confirmed by an activity-deleted mutant (C185S) and an activity-decreased mutant (Y513C). In addition, the deubiquitinating enzyme activity of USP22 is related to the levels of BMI-1, c-Myc, cyclin D2 and p53. Our findings indicate that the deubiquitinating enzyme activity of USP22 is necessary for regulating HeLa cell growth, and it promotes cell proliferation via the c-Myc/cyclin D2, BMI-1 and p53 pathways in HeLa cell.


Subject(s)
Thiolester Hydrolases/physiology , Amino Acid Substitution , Apoptosis/physiology , Cell Cycle/physiology , Cell Proliferation/physiology , Cyclin D2/metabolism , Gene Knockdown Techniques , HeLa Cells , Humans , Mutagenesis, Site-Directed , Mutation , Oncogenes , Polycomb Repressive Complex 1/metabolism , Polymorphism, Single Nucleotide , Proto-Oncogene Proteins c-myc/metabolism , RNA, Small Interfering/genetics , Signal Transduction , Thiolester Hydrolases/antagonists & inhibitors , Thiolester Hydrolases/genetics , Tumor Suppressor Protein p53/metabolism , Ubiquitin Thiolesterase , Ubiquitin-Specific Proteases/antagonists & inhibitors , Ubiquitin-Specific Proteases/genetics , Ubiquitin-Specific Proteases/physiology
13.
Biochem Biophys Res Commun ; 460(3): 703-8, 2015 May 08.
Article in English | MEDLINE | ID: mdl-25817787

ABSTRACT

The histone ubiquitin hydrolase ubiquitin-specific protease 22 (USP22) is an epigenetic modifier and an oncogene that is upregulated in many types of cancer. In non-small cell lung cancer (NSCLC), aberrant expression of USP22 is a predictor of poor survival, as is high expression of cyclooxygenase-2 (COX-2). Despite its oncogenic role, few substrates of USP22 have been identified and its mechanism of action in cancer remains unclear. Here, we identified COX-2 as a direct substrate of USP22 and showed that its levels are modulated by USP22 mediated deubiquitination. Silencing of USP22 downregulated COX-2, decreased its half-life, and inhibited lung carcinoma cell proliferation by directly interacting with and modulating the stability and activity of COX-2 through the regulation of its ubiquitination status. The findings of the present study suggest a potential mechanism underlying the oncogenic role of USP22 mediated by the modulation of the stability and activity of COX-2.


Subject(s)
Carcinoma, Non-Small-Cell Lung/enzymology , Cyclooxygenase 2/metabolism , Lung Neoplasms/enzymology , Oncogenes , Thiolester Hydrolases/physiology , Carcinoma, Non-Small-Cell Lung/pathology , Cell Line, Tumor , Cell Proliferation , Humans , Lung Neoplasms/pathology , Protein Stability , Substrate Specificity , Thiolester Hydrolases/genetics , Thiolester Hydrolases/metabolism , Ubiquitin Thiolesterase
14.
Biochim Biophys Acta ; 1853(3): 646-59, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25576518

ABSTRACT

In the protozoa parasite Giardia lamblia, endocytosis and lysosomal protein trafficking are vital parasite-specific processes that involve the action of the adaptor complexes AP-1 and AP-2 and clathrin. In this work, we have identified a single gene in Giardia encoding a protein containing an ENTH domain that defines monomeric adaptor proteins of the epsin family. This domain is present in the epsin or epsin-related (epsinR) adaptor proteins, which are implicated in endocytosis and Golgi-to-endosome protein trafficking, respectively, in other eukaryotic cells. We found that GlENTHp (for G. lamblia ENTH protein) localized in the cytosol, strongly interacted with PI3,4,5P3, was associated with the alpha subunit of AP-2, clathrin and ubiquitin and was involved in receptor-mediated endocytosis. It also bonded PI4P, the gamma subunit of AP-1 and was implicated in ER-to-PV trafficking. Alteration of the GlENTHp function severely affected trophozoite growth showing an unusual accumulation of dense material in the lysosome-like peripheral vacuoles (PVs), indicating that GlENTHp might be implicated in the maintenance of PV homeostasis. In this study, we showed evidence suggesting that GlENTHp might function as a monomeric adaptor protein supporting the findings of other group indicating that GlENTHp might be placed at the beginning of the ENTH family.


Subject(s)
Endocytosis , Giardia lamblia , Lysosomes/metabolism , Thiolester Hydrolases/physiology , Amino Acid Sequence , Animals , Cells, Cultured , Endocytosis/genetics , Giardia lamblia/enzymology , Giardia lamblia/genetics , Giardia lamblia/metabolism , Mice , Mice, Inbred BALB C , Models, Molecular , Molecular Sequence Data , Organisms, Genetically Modified , Protein Structure, Tertiary , Protein Transport/genetics , Sequence Homology, Amino Acid , Thiolester Hydrolases/chemistry
15.
Oncol Rep ; 33(1): 133-40, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25369910

ABSTRACT

Ubiquitin specific protease 22 (USP22) is an oncogene that is upregulated in many cancer types, and aberrant expression of USP22 correlates with clinical outcome. However, its potential functional impact in epithelial ovarian cancer (EOC) has not been determined. Here, we report that USP22 was upregulated in EOC specimens and EOC cell lines with important functional consequences. A high level of USP22 in EOC tissues was associated with advanced clinical FIGO stage, lymph node metastasis and worse prognosis. Patients with higher USP22 expression had shorter relapse-free and overall survival. Depletion of USP22 suppressed cell proliferation in vitro and tumor growth in vivo. We found that inhibition of USP22 suppressed cell proliferation by inducing G1 phase cell cycle arrest through synergy with oncogenic transforming growth factor-ß1 (TGFB1). Our results indicate that USP22 functions as an oncogene in EOC, and thus USP22 may serve as a potential therapeutic target for individualized EOC treatment.


Subject(s)
Cell Proliferation , Neoplasms, Glandular and Epithelial/enzymology , Ovarian Neoplasms/enzymology , Thiolester Hydrolases/physiology , Transforming Growth Factor beta1/physiology , Animals , Carcinogenesis/metabolism , Carcinoma, Ovarian Epithelial , Cell Line, Tumor , Disease-Free Survival , Female , Follow-Up Studies , Gene Expression , Humans , Mice, Inbred BALB C , Mice, Nude , Middle Aged , Neoplasms, Glandular and Epithelial/mortality , Neoplasms, Glandular and Epithelial/pathology , Ovarian Neoplasms/mortality , Ovarian Neoplasms/pathology , Prognosis , Signal Transduction , Tumor Burden , Ubiquitin Thiolesterase
16.
Biochem Biophys Res Commun ; 449(1): 14-8, 2014 Jun 20.
Article in English | MEDLINE | ID: mdl-24802393

ABSTRACT

Ubiquitin-specific processing enzyme 22 (USP22), a member of the deubiquitinase family, is over-expressed in most human cancers and has been implicated in tumorigenesis. Because it is an enzymatic subunit of the human SAGA transcriptional cofactor, USP22 deubiquitylates histone H2A and H2B in the nucleus, thus participating in gene regulation and cell-cycle progression. However, the mechanisms regulating its nuclear translocation have not yet been elucidated. It was here demonstrated that USP22 is imported into the nucleus through a mechanism mediated by nuclear localization signal (NLS). The bipartite NLS sequence KRELELLKHNPKRRKIT (aa152-168), was identified as the functional NLS for its nuclear localization. Furthermore, a short cluster of basic amino acid residues KRRK within this bipartite NLS plays the primary role in nuclear localization and is evolutionarily conserved in USP22 homologues. In the present study, a functional NLS and the minimal sequences required for the active targeting of USP22 to the nucleus were identified. These findings may provide a molecular basis for the mechanism underlying USP22 nuclear trafficking and function.


Subject(s)
Cell Nucleus/chemistry , Cell Nucleus/physiology , Nuclear Localization Signals/chemistry , Nuclear Localization Signals/physiology , Thiolester Hydrolases/chemistry , Thiolester Hydrolases/physiology , Active Transport, Cell Nucleus/physiology , Amino Acid Sequence , Conserved Sequence , HeLa Cells , Humans , Molecular Sequence Data , Structure-Activity Relationship , Ubiquitin Thiolesterase
18.
EMBO J ; 32(9): 1225-37, 2013 May 02.
Article in English | MEDLINE | ID: mdl-23481255

ABSTRACT

Adenosine diphosphate (ADP)-ribosylation is a post-translational protein modification implicated in the regulation of a range of cellular processes. A family of proteins that catalyse ADP-ribosylation reactions are the poly(ADP-ribose) (PAR) polymerases (PARPs). PARPs covalently attach an ADP-ribose nucleotide to target proteins and some PARP family members can subsequently add additional ADP-ribose units to generate a PAR chain. The hydrolysis of PAR chains is catalysed by PAR glycohydrolase (PARG). PARG is unable to cleave the mono(ADP-ribose) unit directly linked to the protein and although the enzymatic activity that catalyses this reaction has been detected in mammalian cell extracts, the protein(s) responsible remain unknown. Here, we report the homozygous mutation of the c6orf130 gene in patients with severe neurodegeneration, and identify C6orf130 as a PARP-interacting protein that removes mono(ADP-ribosyl)ation on glutamate amino acid residues in PARP-modified proteins. X-ray structures and biochemical analysis of C6orf130 suggest a mechanism of catalytic reversal involving a transient C6orf130 lysyl-(ADP-ribose) intermediate. Furthermore, depletion of C6orf130 protein in cells leads to proliferation and DNA repair defects. Collectively, our data suggest that C6orf130 enzymatic activity has a role in the turnover and recycling of protein ADP-ribosylation, and we have implicated the importance of this protein in supporting normal cellular function in humans.


Subject(s)
Glycoside Hydrolases/physiology , Neurodegenerative Diseases/enzymology , Poly Adenosine Diphosphate Ribose/physiology , Thiolester Hydrolases/physiology , Amino Acid Sequence , Base Sequence , Cells, Cultured , Child , Child, Preschool , Family , Female , Glycoside Hydrolases/genetics , HEK293 Cells , HeLa Cells , Humans , Male , Models, Molecular , Molecular Sequence Data , Neurodegenerative Diseases/genetics , Pedigree , Poly Adenosine Diphosphate Ribose/genetics , Protein Processing, Post-Translational/genetics , Sequence Homology, Amino Acid , Thiolester Hydrolases/genetics
19.
Int J Cancer ; 133(12): 2759-68, 2013 Dec 15.
Article in English | MEDLINE | ID: mdl-23436247

ABSTRACT

E3 ubiquitin ligases and deubiquitylating enzymes (DUBs) are the key components of ubiquitin proteasome system which plays a critical role in cellular protein homeostasis. Any shortcoming in their biological roles can lead to various diseases including cancer. The dynamic interplay between ubiquitylation and deubiquitylation determines the level and activity of several proteins including p53, which is crucial for cellular stress response and tumor suppression pathways. In this review, we describe the different types of E3 ubiquitin ligases including those targeting tumor suppressor p53, SCF ligases and RING type ligases and accentuate on biological functions of few important E3 ligases in the cellular regulatory networks. Tumor suppressor p53 level is tightly regulated by multiple E3 ligases including Mdm2, COP1, Pirh2, etc. SCF ubiquitin ligase complexes are key regulators of cell cycle and signal transduction. BRCA1 and VHL RING type ligases function as tumor suppressors and play an important role in DNA repair and hypoxia response respectively. Further, we discuss the biological consequences of deregulation of the E3 ligases and the implications for cancer development. We also describe deubiquitylases which reverse the process of ubiquitylation and regulate diverse cellular pathways including metabolism, cell cycle control and chromatin remodelling. As the E3 ubiquitin ligases and DUBs work in a substrate specific manner, an improved understanding of them can lead to better therapeutics for cancer.


Subject(s)
Neoplasms/etiology , Ubiquitin-Protein Ligases/physiology , Ubiquitin/metabolism , Animals , BRCA1 Protein/physiology , Humans , Neoplasms/metabolism , Proto-Oncogene Proteins c-mdm2/physiology , Thiolester Hydrolases/physiology , Tumor Suppressor Protein p53/metabolism , Ubiquitin Thiolesterase/physiology , Ubiquitin-Specific Peptidase 7 , Ubiquitination
20.
PLoS One ; 5(6): e11025, 2010 Jun 11.
Article in English | MEDLINE | ID: mdl-20552012

ABSTRACT

Francisella tularensis is a highly infectious facultative intracellular bacterium that can be transmitted between mammals by arthropod vectors. Similar to many other intracellular bacteria that replicate within the cytosol, such as Listeria, Shigella, Burkholderia, and Rickettsia, the virulence of F. tularensis depends on its ability to modulate biogenesis of its phagosome and to escape into the host cell cytosol where it proliferates. Recent studies have identified the F. tularensis genes required for modulation of phagosome biogenesis and escape into the host cell cytosol within human and arthropod-derived cells. However, the arthropod and mammalian host factors required for intracellular proliferation of F. tularensis are not known. We have utilized a forward genetic approach employing genome-wide RNAi screen in Drosophila melanogaster-derived cells. Screening a library of approximately 21,300 RNAi, we have identified at least 186 host factors required for intracellular bacterial proliferation. We silenced twelve mammalian homologues by RNAi in HEK293T cells and identified three conserved factors, the PI4 kinase PI4KCA, the ubiquitin hydrolase USP22, and the ubiquitin ligase CDC27, which are also required for replication in human cells. The PI4KCA and USP22 mammalian factors are not required for modulation of phagosome biogenesis or phagosomal escape but are required for proliferation within the cytosol. In contrast, the CDC27 ubiquitin ligase is required for evading lysosomal fusion and for phagosomal escape into the cytosol. Although F. tularensis interacts with the autophagy pathway during late stages of proliferation in mouse macrophages, this does not occur in human cells. Our data suggest that F. tularensis utilizes host ubiquitin turnover in distinct mechanisms during the phagosomal and cytosolic phases and phosphoinositide metabolism is essential for cytosolic proliferation of F. tularensis. Our data will facilitate deciphering molecular ecology, patho-adaptation of F. tularensis to the arthropod vector and its role in bacterial ecology and patho-evolution to infect mammals.


Subject(s)
Cytosol/microbiology , Francisella tularensis/growth & development , Integration Host Factors/physiology , Phagosomes/microbiology , Animals , Cell Line , Drosophila melanogaster/physiology , Francisella tularensis/genetics , Humans , Minor Histocompatibility Antigens , Phosphotransferases (Alcohol Group Acceptor)/physiology , RNA Interference , Thiolester Hydrolases/physiology , Ubiquitin Thiolesterase
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