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1.
J Org Chem ; 89(13): 9313-9321, 2024 Jul 05.
Article in English | MEDLINE | ID: mdl-38900839

ABSTRACT

ß-l-5-((E)-2-Bromovinyl)-1-((2S,4S)-2-(hydroxymethyl)-1,3-(dioxolane-4-yl) uracil (l-BHDU, 17) is a potent and selective inhibitor of the varicella-zoster virus (VZV). l-BHDU (17) has demonstrated excellent anti-VZV activity and is a preclinical candidate to treat chickenpox, shingles (herpes zoster), and herpes simplex virus 1 (HSV-1) infections. Its monophosphate prodrug (POM-l-BHDU-MP, 24) demonstrated an enhanced pharmacokinetic and antiviral profile. POM-l-BHDU-MP (24), in vivo, effectively reduced the VZV viral load and was effective for the topical treatment of VZV and HSV-1 infections. Therefore, a viable synthetic procedure for developing POM-l-BHDU-MP (24) is needed. In this article, an efficient approach for the synthesis of l-BHDU (17) from a readily available starting material is described in 7 steps. An efficient and practical methodology for both chiral pure l- & d-dioxolane 11 and 13 were developed via diastereomeric chiral amine salt formation. Neutralization of the amine carboxylate salt of l-dioxolane 10 provides enantiomerically pure l-dioxane 11 (ee ≥ 99%). Optically pure 11 was utilized to construct the final nucleoside l-BHDU (17) and its monophosphate ester prodrug (POM-l-BHDU-MP, 24). Notably, the reported process eliminates expensive chiral chromatography for the synthesis of chiral pure l- & d-dioxolane, which offers avenues for the development and structure-activity relationship studies of l- & d-dioxolane-derived nucleosides.


Subject(s)
Antiviral Agents , Dioxolanes , Stereoisomerism , Dioxolanes/chemistry , Dioxolanes/pharmacology , Dioxolanes/chemical synthesis , Antiviral Agents/chemistry , Antiviral Agents/chemical synthesis , Antiviral Agents/pharmacology , Uracil/analogs & derivatives , Uracil/chemistry , Uracil/chemical synthesis , Uracil/pharmacology , Molecular Structure , Prodrugs/chemistry , Prodrugs/pharmacology , Prodrugs/chemical synthesis
2.
ChemMedChem ; 19(13): e202300655, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38529661

ABSTRACT

Cancer stem cells (CSCs) are a niche of highly tumorigenic cells featuring self-renewal, activation of pluripotency genes, multidrug resistance, and ability to cause cancer relapse. Seven HDACi (1-7), showing either hydroxamate or 2'-aminoanilide function, were tested in colorectal cancer (CRC) and glioblastoma multiforme (GBM) CSCs to determine their effects on cell proliferation, H3 acetylation levels and in-cell HDAC activity. Two uracil-based hydroxamates, 5 and 6, which differ in substitution at C5 and C6 positions of the pyrimidine ring, exhibited the greatest cytotoxicity in GBM (5) and CRC (6) CSCs, followed by the pyridine-hydroxamate 2, with 2- to 6-fold higher potency than the positive control SAHA. Finally, increased H3 acetylation as well as HDAC inhibition directly in cells by selected 2'-aminoanilide 4 and hydroxamate 5 confirmed target engagement. Further investigation will be conducted into the broad-spectrum anticancer properties of the most potent derivatives and their effects in combination with approved, conventional anticancer drugs.


Subject(s)
Antineoplastic Agents , Cell Proliferation , Colorectal Neoplasms , Glioblastoma , Histone Deacetylase Inhibitors , Neoplastic Stem Cells , Pyridines , Uracil , Humans , Neoplastic Stem Cells/drug effects , Neoplastic Stem Cells/pathology , Histone Deacetylase Inhibitors/pharmacology , Histone Deacetylase Inhibitors/chemistry , Histone Deacetylase Inhibitors/chemical synthesis , Pyridines/chemistry , Pyridines/pharmacology , Pyridines/chemical synthesis , Glioblastoma/drug therapy , Glioblastoma/pathology , Colorectal Neoplasms/drug therapy , Colorectal Neoplasms/pathology , Antineoplastic Agents/pharmacology , Antineoplastic Agents/chemistry , Antineoplastic Agents/chemical synthesis , Cell Proliferation/drug effects , Uracil/pharmacology , Uracil/chemistry , Uracil/analogs & derivatives , Uracil/chemical synthesis , Structure-Activity Relationship , Drug Screening Assays, Antitumor , Cell Line, Tumor , Molecular Structure , Dose-Response Relationship, Drug
3.
ACS Appl Mater Interfaces ; 13(31): 36948-36957, 2021 Aug 11.
Article in English | MEDLINE | ID: mdl-34338517

ABSTRACT

This work is focused on the rational structural design of two isostructural Cu(II) nano-coordination polymers (NCPs) with uracil-1-acetic acid (UAcOH) (CP1n) and 5-fluorouracil-1-acetic acid (CP2n). Suitable single crystals for X-ray diffraction studies of CP1 and CP2 were prepared under hydrothermal conditions, enabling their structural determination as 1D-CP ladder-like polymeric structures. The control of the synthetic parameters allows their processability into water colloids based on nanoplates (CP1n and CP2n). These NCPs are stable in water at physiological pHs for long periods. However, interestingly, CP1n is chemically altered in culture media. These transformations provoke the partial release of its building blocks and the formation of new species, such as [Cu(UAcO)2(H2O)4]·2H2O (Cu(II)-complex), and species corresponding to the partial reduction of the Cu(II) centers. The cytotoxic studies of CP1n versus human pancreatic adenocarcinoma and human uveal melanoma cells show that CP1n produces a decrease in the cell viability, while their UAcOH and Cu(II)-complex are not cytotoxic under similar conditions. The copper reduction species detected in the hydrolysis of CP1n are closely related to the formation of the reactive oxygen species (ROS) detected in the cytotoxic studies. These results prompted us to prepare CP2n that was designed to improve the cytotoxicity by the substitution of UAcO by 5-FUAcO, taking into account the anticancer activity of the 5-fluorouracil moiety. The new CP2n has a similar behavior to CP1n both in water and in biological media. However, its subtle structural differences are vital in improving its cytotoxic activity. Indeed, the release during the hydrolysis of species containing the 5-fluorouracil moiety provokes a remarkable increase in cellular toxicity and a significant increase in ROS species formation.


Subject(s)
Antineoplastic Agents/pharmacology , Coordination Complexes/pharmacology , Polymers/pharmacology , Uracil/analogs & derivatives , Uracil/pharmacology , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Cell Line, Tumor , Cell Survival/drug effects , Coordination Complexes/chemical synthesis , Coordination Complexes/chemistry , Copper/chemistry , Humans , Polymers/chemical synthesis , Polymers/chemistry , Reactive Oxygen Species/metabolism , Uracil/chemical synthesis
4.
ChemistryOpen ; 10(1): 28-45, 2021 01.
Article in English | MEDLINE | ID: mdl-33448132

ABSTRACT

The conversion of the 1 : 1-complex of Cisplatin with 1-methyluracil (1MeUH), cis-[Pt(NH3 )2 (1MeU-N3)Cl] (1 a) to the aqua species cis-[Pt(NH3 )2 (1MeU-N3)(OH2 )]+ (1 b), achieved by reaction of 1 a with AgNO3 in water, affords a mixture of compounds, the composition of which strongly depends on sample history. The complexity stems from variations in condensation patterns and partial loss of NH3 ligands. In dilute aqueous solution, 1 a, and dinuclear compounds cis-[(NH3 )2 (1MeU-N3)Pt(µ-OH)Pt(1MeU-N3)(NH3 )2 ]+ (3) as well as head-tail cis-[Pt2 (NH3 )4 (µ-1MeU-N3,O4)2 ]2+ (4) represent the major components. In addition, there are numerous other species present in minor quantities, which differ in metal nuclearity, stoichiometry, stereoisomerism, and Pt oxidation state, as revealed by a combination of 1 H NMR and ESI-MS spectroscopy. Their composition appears not to be the consequence of a unique and repeating coordination pattern of the 1MeU ligand in oligomers but rather the coexistence of distinctly different condensation patterns, which include µ-OH, µ-1MeU, and µ-NH2 bridging and combinations thereof. Consequently, the products obtained should, in total, be defined as a heterogeneous mixture rather than a mixture of oligomers of different sizes. In addition, a N2 complex, [Pt(NH3 )(1MeU)(N2 )]+ appears to be formed in gas phase during the ESI-MS experiment. In the presence of Na+ ions, multimers n of 1 a with n=2, 3, 4 are formed that represent analogues of non-metalated uracil quartets found in tetrastranded RNA.


Subject(s)
Coordination Complexes/chemistry , Uracil/analogs & derivatives , Ammonia/chemistry , Cisplatin/chemistry , Coordination Complexes/chemical synthesis , Ligands , Molecular Structure , Silver Nitrate/chemistry , Uracil/chemical synthesis , Uracil/chemistry , Water/chemistry
5.
Eur J Med Chem ; 211: 113066, 2021 Feb 05.
Article in English | MEDLINE | ID: mdl-33341648

ABSTRACT

MAIT cells are preset αß T lymphocytes that recognize a series of microbial antigens exclusively derived from the riboflavin biosynthesis pathway, which is present in most bacteria. The most active known antigen is unstable 5-(2-oxopropylideneamino)-6-(d-ribitylamino)uracil (5-OP-RU) which is stabilized when bound and presented to MAIT cells by MHC-related protein 1 (MR1). Here we describe the chemical synthesis and biological evaluation of new chemical probes for the study of MAIT cell biology. The two probes were ethinyl functionalized analogues of 5-OP-RU able to react through CuAAC also called "click chemistry". The molecules up-regulated more MR1 than 5-OP-RU and they efficiently activated iVα19 Vß8 TCR transgenic murine MAIT cells but not iVα19 TCRα transgenic MAIT cells indicating a surprisingly strong impact of the TRCß chain. Moreover, the use of these molecules as chemical probes was validated in vitro by efficient and selective binding to MR1 revealed via fluorescence microscopy. This study was also complemented by molecular modelling investigation of the probes and the binary/ternary complexes they form with MR1 and the TCR. These new probes will be crucial to delineate the dynamics of 5-OP-RU at the cellular or whole organism level and to identify the cells presenting 5-OP-RU to MAIT cells in vivo.


Subject(s)
Click Chemistry/methods , Mucosal-Associated Invariant T Cells/metabolism , Ribitol/analogs & derivatives , Uracil/analogs & derivatives , Animals , Cell Biology , Humans , Mice , Models, Molecular , Ribitol/chemical synthesis , Ribitol/chemistry , Uracil/chemical synthesis , Uracil/chemistry
6.
J Am Chem Soc ; 142(34): 14422-14426, 2020 08 26.
Article in English | MEDLINE | ID: mdl-32786749

ABSTRACT

Fluorescent base analogs (FBAs) are powerful probes of nucleic acids' structures and dynamics. However, previously reported FBAs exhibit relatively low brightness and therefore limited sensitivity of detection. Here we report the hitherto brightest FBA that has ideal molecular rotor properties for detecting local dynamic motions associated with base pair mismatches. The new trans-stilbene annulated uracil derivative "tsT" exhibits bright fluorescence emissions in various solvents (ε × Φ = 3400-29 700 cm-1 M-1) and is highly sensitive to mechanical motions in duplex DNA (ε × Φ = 150-4250 cm-1 M-1). tsT is thereby a "smart" thymidine analog, exhibiting a 28-fold brighter fluorescence intensity when base paired with A as compared to T or C. Time-correlated single photon counting revealed that the fluorescence lifetime of tsT (τ = 4-11 ns) was shorter than its anisotropy decay in well-matched duplex DNA (θ = 20 ns), yet longer than the dynamic motions of base pair mismatches (0.1-10 ns). These properties enable unprecedented sensitivity in detecting local dynamics of nucleic acids.


Subject(s)
DNA/analysis , Fluorescent Dyes/chemistry , Uracil/chemistry , Base Pair Mismatch , Density Functional Theory , Fluorescence , Fluorescent Dyes/chemical synthesis , Nucleic Acid Conformation , Uracil/chemical synthesis
7.
Bioorg Chem ; 100: 103864, 2020 07.
Article in English | MEDLINE | ID: mdl-32446118

ABSTRACT

Three series of the ß-pyrimidine alanines, including willardiine - a naturally occurring amino acid, were prepared from the l-serine-derived sulfamidates. Compounds 3b, 4a and 4b demonstrated antiproliferative activity toward the studied cancer cell lines, albeit the effect of these compounds on human brain astrocytoma MOG-G-CCM cells was more significant than on human neuroblastoma SK-N-AS cells. The cytosine analog of willardiine, compound 4b, reduced viability of MOG-G-CCM cells with EC50 = 36 ± 2 µM, more effectively than AMPA antagonist GYKI 52466. Willardiine showed possible capability of affecting invasiveness of glioblastoma U251 MG cells with no effect on their viability and morphology. Compound 3d, the ethyl ester of willardiine, featured activity toward binding domain hHS1S2I of the GluR2 receptor. Docking analysis revealed that the location mode of compound 3d at the S1S2 domain of hGluR2 (PDB ID: 3R7X) might differ from that of willardiine.


Subject(s)
Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Pyrimidines/chemistry , Pyrimidines/pharmacology , beta-Alanine/analogs & derivatives , beta-Alanine/pharmacology , Alanine/analogs & derivatives , Alanine/chemical synthesis , Alanine/chemistry , Alanine/pharmacology , Antineoplastic Agents/chemical synthesis , Brain Neoplasms/drug therapy , Brain Neoplasms/metabolism , Cell Line, Tumor , Cell Proliferation/drug effects , Cell Survival/drug effects , Humans , Models, Molecular , Pyrimidines/chemical synthesis , Uracil/chemical synthesis , Uracil/chemistry , Uracil/pharmacology , beta-Alanine/chemical synthesis
8.
Carbohydr Res ; 492: 108013, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32335391

ABSTRACT

Synthesis of 2'-O,5'-C-bridged-ß-d-homolyxofuranosyl nucleosides U and T have been achieved starting from diacetone-d-glucose in overall yields 55.7 and 57.1%, respectively. Quantitative regioselective monoacetylation of the lone primary hydroxyl group in trihydroxy nucleoside intermediate, i.e. 3'-O-benzyl-ß-d-glucofuranosyl nucleosides mediated by Novozyme®-435 has been utilized as the key step in the synthesis of homolyxofuranosyl nucleosides. The structure of the synthesized 2'-O,5'-C-bridged-ß-d-homolyxofuranosyl uracil and -thymine has been established on the basis of their spectral (IR, 1H, 13C NMR and HRMS) data analysis and the structure of earlier nucleoside was confirmed by its X-rays diffraction analysis which revealed that these 2'-O,5'-C-bridged homo-nucleosides are locked into S-type sugar puckering.


Subject(s)
Pyrimidine Nucleosides/chemical synthesis , Thymine/chemical synthesis , Uracil/chemical synthesis , Carbohydrate Conformation , Pyrimidine Nucleosides/chemistry , Thymine/analogs & derivatives , Thymine/chemistry , Uracil/analogs & derivatives , Uracil/chemistry
9.
Molecules ; 25(8)2020 Apr 24.
Article in English | MEDLINE | ID: mdl-32344516

ABSTRACT

There has been much effort to exploit fluorescence techniques in the detection of nucleic acids. Canonical nucleic acids are essentially nonfluorescent; however, the modification of the nucleobase has proved to be a fruitful way to engender fluorescence. Much of the chemistry used to prepare modified nucleobases relies on expensive transition metal catalysts. In this work, we describe the synthesis of biaryl quinazolinone-uracil nucleobase analogs prepared by the condensation of anthranilamide derivatives and 5-formyluracil using inexpensive copper salts. A selection of modified nucleobases were prepared, and the effect of methoxy- or nitro- group substitution on the photophysical properties was examined. Both the dihydroquinazolinone and quinazolinone modified uracils have much larger molar absorptivity (~4-8×) than natural uracil and produce modest blue fluorescence. The quinazolinone-modified uracils display higher quantum yields than the corresponding dihydroquinazolinones and also show temperature and viscosity dependent emission consistent with molecular rotor behavior. Peptide nucleic acid (PNA) monomers possessing quinazolinone modified uracils were prepared and incorporated into oligomers. In the sequence context examined, the nitro-substituted, methoxy-substituted and unmodified quinazolinone inserts resulted in a stabilization (∆Tm = +4.0/insert; +2.0/insert; +1.0/insert, respectively) relative to control PNA sequence upon hybridization to complementary DNA. All three derivatives responded to hybridization by the "turn-on" of fluorescence intensity by ca. 3-to-4 fold and may find use as probes for complementary DNA sequences.


Subject(s)
Fluorescent Dyes/chemistry , Peptide Nucleic Acids/chemistry , Quinazolinones/chemistry , Uracil/chemistry , Chemistry Techniques, Synthetic , Models, Molecular , Molecular Conformation , Molecular Structure , Solid-Phase Synthesis Techniques , Spectrum Analysis , Uracil/analogs & derivatives , Uracil/chemical synthesis
10.
Article in English | MEDLINE | ID: mdl-32126887

ABSTRACT

6-(4-Chloro-3-nitrophenyl)-4-oxo-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carbonitrile (4) was prepared and was reacted with ethyl chloroacetate, hydrazine hydrate, 4-chloroaniline, formaldehyde, acetic anhydride, formic acid, carbon disulfide, 4-cyanobenzaldehyde, triethyl orthoformate, D-sugars, 4-aminoacetophenone, benzoyl choride and cyclohexanone to afford a series of new uracil derivatives (5-18). Examination of some of the prepared compounds for their antimicrobial, antioxidant and anticancer activities was conducted. Among the tested samples, compound 17 was the most active substance against the gram-positive bacteria and was more potent than the reference drug Cefoperazone. Moreover, the antibacterial activity of 17 was higher against gram-negative bacteria. Compounds 6 and 13 reached a higher scavenging ability toward DPPH radicals and are better candidates for antioxidant activity. Also, compounds 6 and 13 had no significant anticancer activity toward liver cancer (Hep G2) and breast cancer (MCF-7) cell lines.


Subject(s)
Anti-Bacterial Agents/pharmacology , Antifungal Agents/pharmacology , Antineoplastic Agents/pharmacology , Antioxidants/pharmacology , Hydrazones/pharmacology , Sugars/pharmacology , Uracil/pharmacology , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/chemistry , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Antioxidants/chemical synthesis , Antioxidants/chemistry , Aspergillus flavus/drug effects , Bacillus cereus/drug effects , Biphenyl Compounds/antagonists & inhibitors , Cell Proliferation/drug effects , Dose-Response Relationship, Drug , Drug Screening Assays, Antitumor , Hep G2 Cells , Humans , Hydrazones/chemical synthesis , Hydrazones/chemistry , Listeria monocytogenes/drug effects , MCF-7 Cells , Microbial Sensitivity Tests , Molecular Structure , Picrates/antagonists & inhibitors , Salmonella/drug effects , Staphylococcus aureus/drug effects , Structure-Activity Relationship , Sugars/chemical synthesis , Sugars/chemistry , Tumor Cells, Cultured , Uracil/chemical synthesis , Uracil/chemistry , Yersinia enterocolitica/drug effects
11.
J Recept Signal Transduct Res ; 40(2): 166-172, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32019395

ABSTRACT

In the present study, a new series of α-Aminophosphonates bearing 6-amino-1,3-dimethyluracil was synthesized in good to excellent yields (78-95%) by one-pot, three-component reaction of 6-amino-1,3-dimethyluracil, aromatic aldehydes and diethylphosphite via Kabachnik-Fields reaction by using an eco-friendly Eaton's reagent. All the compounds were screened for in vitro antioxidant studies by 2,2-diphenyl-1-picrylhydrazyl (DPPH) and hydrogen peroxide (H2O2) methods. Among the synthesized bioactive molecules, 4a, 4d, 4g, and 4h exhibited promising antioxidant activity compared with the standard drug Ascorbic acid. Furthermore, in order to support the biological results of the compounds, molecular docking studies were performed against Aromatase enzyme for four compounds which revealed that the compounds 4a, 4d, 4g, and 4h have significant binding modes, with docking scores of -8.6, -8.4, -8.1 and -8.1 respectively and the compound 4b specifically has equal dock score of -8.0 when compared with the standard drug Exemestane.


Subject(s)
Antioxidants/chemistry , Aromatase Inhibitors/chemistry , Organophosphonates/chemistry , Uracil/analogs & derivatives , Antioxidants/chemical synthesis , Aromatase/chemistry , Aromatase Inhibitors/chemical synthesis , Ascorbic Acid/chemistry , Biphenyl Compounds/chemistry , Computer Simulation , Humans , Hydrogen Peroxide/chemistry , In Vitro Techniques , Molecular Docking Simulation , Organophosphonates/chemical synthesis , Picrates/chemistry , Uracil/chemical synthesis , Uracil/chemistry
12.
ACS Chem Biol ; 15(2): 437-445, 2020 02 21.
Article in English | MEDLINE | ID: mdl-31909966

ABSTRACT

Mucosal-associated invariant T (MAIT) cells are antibacterial effector T cells that react to pyrimidines derived from bacterial riboflavin synthesis presented by the monomorphic molecule MR1. A major challenge in MAIT cell research is that the commonly used MAIT agonist precursor, 5-amino-6-d-ribitylaminouracil (5-A-RU), is labile to autoxidation, resulting in a loss of biological activity. Here, we characterize two independent autoxidation processes by LCMS. To overcome the marked instability, we report the synthesis of a 5-A-RU prodrug generated by modification of the 5-amino group with a cleavable valine-citrulline-p-aminobenzyl carbamate. The compound is stable in prodrug form, with the parent amine (i.e., 5-A-RU) released only after enzymatic cleavage. Analysis of the prodrug in vitro and in vivo showed an enhanced MAIT cell activation profile compared to 5-A-RU, which was associated with preferential loading within recycling endosomes, a route used by some natural agonists. This prodrug design therefore overcomes the difficulties associated with 5-A-RU in biological studies and provides an opportunity to explore different presentation pathways.


Subject(s)
Endosomes/metabolism , Histocompatibility Antigens Class I/metabolism , Immunologic Factors/pharmacology , Lymphocyte Activation/drug effects , Minor Histocompatibility Antigens/metabolism , Mucosal-Associated Invariant T Cells/drug effects , Prodrugs/pharmacology , Animals , Humans , Immunologic Factors/chemical synthesis , Immunologic Factors/metabolism , Mice , Prodrugs/chemical synthesis , Prodrugs/metabolism , Ribitol/analogs & derivatives , Ribitol/chemical synthesis , Ribitol/metabolism , Ribitol/pharmacology , Uracil/analogs & derivatives , Uracil/chemical synthesis , Uracil/metabolism , Uracil/pharmacology
13.
Eur J Med Chem ; 188: 112006, 2020 Feb 15.
Article in English | MEDLINE | ID: mdl-31931337

ABSTRACT

Although triiodothyronine (T3) induces several beneficial effects on lipid metabolism, its use is hampered by toxic side-effects, such as tachycardia, arrhythmia, heart failure, bone and muscle catabolism and mood disturbances. Since the α isoform of thyroid hormone receptors (TRs) is the main cause of T3-related harmful effects, several efforts have been made to develop selective agonists of the ß isoform that could induce some beneficial effects (i.e. lowering triglyceride and cholesterol levels reducing obesity and improving metabolic syndrome), while overcoming most of the adverse T3-dependent side effects. Herein, we describe the drug discovery process sustained by ADME-Toxicity analysis that led us to identify novel agonists with selectivity for the isoform TRß and an acceptable off-target and absorption, distribution metabolism, excretion and toxicity (ADME-Tox) profile. Within the small series of compounds synthesized, derivatives 1 and 3, emerge from this analysis as "potentially safe" to be engaged in preclinical studies. In in vitro investigation proved that both compounds were able to reduce lipid accumulation in HepG2 and promote lipolysis with comparable effects to those elicited by T3, used as reference drug. Moreover, a preliminary in vivo study confirmed the apparent lack of toxicity, thus suggesting compounds 1 and 3 as new potential TRß-selective thyromimetics.


Subject(s)
Drug Design , Pyridazines/pharmacology , Thyroid Hormone Receptors beta/agonists , Uracil/analogs & derivatives , Animals , Dose-Response Relationship, Drug , Hep G2 Cells , Humans , Male , Molecular Structure , Pyridazines/chemical synthesis , Pyridazines/chemistry , Rats , Rats, Inbred F344 , Structure-Activity Relationship , Uracil/chemical synthesis , Uracil/chemistry , Uracil/pharmacology
14.
Anticancer Agents Med Chem ; 20(3): 359-368, 2020.
Article in English | MEDLINE | ID: mdl-31823706

ABSTRACT

BACKGROUND: Hybrid molecules combining uracil skeleton with methylidene exo-cyclic group were designed in the search for novel anticancer drug candidates. OBJECTIVE: Two series of racemic 5-methylidenedihydrouracils, either 1,3-disubstituted or 1,3,6-trisubstituted were synthesized and tested for their possible cytotoxic activity against two cancer cell lines (HL-60 and MCF-7) and two healthy cell lines (HUVEC and MCF-10A). The most cytotoxic analogs were re-synthesized as pure enantiomers. The analog designated as U-332 [(R)-3-(4-bromophenyl)-1-ethyl-5-methylidene-6-phenyldihydrouracil], which had a very low IC50 value in HL-60 cell line (0.77µM) and was the most selective towards cancer cells was chosen for further experiments on HL-60 cell line, in order to determine the possible mechanism involved in its antineoplastic action. METHODS: Cytotoxic activities of compound was assessed by the MTT assay. In order to explore the mechanism of U-332 activity, we performed quantitative real-time PCR analysis of p53 and p21 genes. Apoptosis, cell proliferation and DNA damage in HL-60 cells were determined using the flow cytometry. The ability of U-332 to determine GADD45ɑ protein level in HL-60 cells incubated with U-332 was analyzed by ELISA test. RESULTS: U-332 was shown to generate excessive DNA damage (70% of the cell population), leading to p53 activation, resulting in p21 down-regulation and a significant increase of GADD45α protein, responsible for the cell cycle arrest in G2/M phase. CONCLUSION: U-332 can be used as a potential lead compound in the further development of novel uracil analogs as anticancer agents.


Subject(s)
Alkenes/chemistry , Antineoplastic Agents/chemical synthesis , Uracil/analogs & derivatives , Uracil/chemical synthesis , Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Cell Cycle Checkpoints/drug effects , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Cell Line, Tumor , Cell Proliferation/drug effects , Cyclin-Dependent Kinase Inhibitor p21/genetics , Cyclin-Dependent Kinase Inhibitor p21/metabolism , DNA Damage/drug effects , Drug Screening Assays, Antitumor , Gene Expression Regulation/drug effects , HL-60 Cells , Humans , MCF-7 Cells , Molecular Structure , Structure-Activity Relationship , Tumor Suppressor Protein p53/metabolism , Uracil/pharmacology
15.
Eur J Med Chem ; 185: 111787, 2020 Jan 01.
Article in English | MEDLINE | ID: mdl-31675511

ABSTRACT

New uncharged conjugates of 6-methyluracil derivatives with imidazole-2-aldoxime and 1,2,4-triazole-3-hydroxamic acid units were synthesized and studied as reactivators of organophosphate-inhibited cholinesterase. Using paraoxon (POX) as a model organophosphate, it was shown that 6-methyluracil derivatives linked with hydroxamic acid are able to reactivate POX-inhibited human acetylcholinesterase (AChE) in vitro. The reactivating efficacy of one compound (5b) is lower than that of pyridinium-2-aldoxime (2-PAM). Meanwhile, unlike 2-PAM, in vivo study showed that the lead compound 5b is able: (1) to reactivate POX-inhibited AChE in the brain; (2) to decrease death of neurons and, (3) to prevent memory impairment in rat model of POX-induced neurodegeneration.


Subject(s)
Acetylcholinesterase/metabolism , Cholinesterase Inhibitors/pharmacology , Hydroxamic Acids/pharmacology , Paraoxon/antagonists & inhibitors , Uracil/analogs & derivatives , Animals , Brain/enzymology , Dose-Response Relationship, Drug , Humans , Hydroxamic Acids/chemistry , Ligands , Maze Learning/drug effects , Mice , Molecular Docking Simulation , Molecular Structure , Paraoxon/pharmacology , Paraoxon/toxicity , Quantum Theory , Rats , Rats, Wistar , Structure-Activity Relationship , Uracil/chemical synthesis , Uracil/chemistry , Uracil/pharmacology
16.
Eur J Med Chem ; 184: 111754, 2019 Dec 15.
Article in English | MEDLINE | ID: mdl-31610377

ABSTRACT

Overexpression of ecto-nucleotide pyrophosphatase-1 (NPP1) is associated with diseases such as calcium pyrophosphate dihydrate deposition disease, calcific aortic valve disease, and type 2 diabetes. In this context, NPP1 inhibitors are potential drug candidates for the treatment of these diseases. The present study focuses on the analysis of the structure-activity relationship of NPP1 inhibitors based on acyclic uracil-nucleotides. For this purpose, we synthesized acyclic uridine-monophosphate analogs, 10-11, uridine-diphosphate analogs, 12-14, and uridine-Pα,α-dithio-triphosphate analogs, 15-17. We evaluated their inhibitory activity and selectivity towards NPP1, -3, NTPDase1, -2, -3, and -8, and P2Y2,4,6 receptors. Analogs 16 and 17 were the most selective and potent NPP1 inhibitors (Ki 0.94 and 0.73 µM, respectively) among the tested molecules. Analogs 10-17 had only minute effect on uracil-nucleotide responding P2Y2,4,6 receptors. Analog 17 (100 µM) displayed 96% inhibition of NPPase activity in osteoarthritic human chondrocytes. Analogs 14-17 displayed weak inhibitory effect on alkaline phosphatase activity at equimolar concentrations in human chondrocytes. All tested analogs showed no toxicity at human chondrocytes. We concluded that ribose-ring to chain transformation, as well as the type of the nucleobase, are parameters of minor significance to NPP1 inhibition, whereas the major parameter is Pα-dithio-substitution. In addition, the length of the phosphate chain also significantly affects inhibition. Overall, the experimental results were well reproduced by molecular docking. A correlation was observed between the activities of the compounds and the number of H-bonds and salt bridges formed between the inhibitors and NPP1 binding site residues. Uracil-N1-(methoxy)ethyl-ß-Pα,α-dithio, Pß,γ-methylene tri-phosphate, 17, was identified as the most potent, selective, and non-toxic NPP1 inhibitor among the tested analogs, and may be used as a lead structure for further drug development.


Subject(s)
Organophosphates/pharmacology , Phosphodiesterase Inhibitors/pharmacology , Pyrophosphatases/antagonists & inhibitors , Uracil/pharmacology , Chondrocytes/drug effects , Chondrocytes/metabolism , Dose-Response Relationship, Drug , Humans , Molecular Structure , Organophosphates/chemical synthesis , Organophosphates/chemistry , Phosphodiesterase Inhibitors/chemical synthesis , Phosphodiesterase Inhibitors/chemistry , Phosphoric Diester Hydrolases/metabolism , Pyrophosphatases/metabolism , Structure-Activity Relationship , Uracil/chemical synthesis , Uracil/chemistry
17.
Org Biomol Chem ; 17(40): 8992-9000, 2019 10 28.
Article in English | MEDLINE | ID: mdl-31497838

ABSTRACT

Mucosal-associated invariant T (MAIT) cells are a subset of recently identified innate-like T lymphocytes that appear to play an important role in many pathologies ranging from viral and bacterial infection, to autoimmune disorders and cancer. MAIT cells are activated via the presentation of ligands by MR1 on antigen presenting cells to the MAIT T cell receptor (TCR), however few studies have explored the effects of systematic changes to the ligand structure on MR1 binding and MAIT cell activation. Herein, we report on the first study into the effects of changes to the sugar motif in the known MAIT cell agonists 7-hydroxy-6-methyl-8-d-ribityllumazine (RL-6-Me-7-OH) and 5-(2-oxopropylideneamino)-6-d-ribitylaminouracil (5-OP-RU). Tetramer staining of MAIT cells revealed that the absence of the 2'-hydroxy group on the sugar backbone of lumazines improved MR1-MAIT TCR binding, which could be rationalised using computational docking studies. Although none of the lumazines activated MAIT cells, all 5-OP-RU analogues showed significant MAIT cell activation, with several analogues exhibiting comparable activity to 5-OP-RU. Docking studies with the 5-OP-RU analogues revealed different interactions between the sugar backbone and MR1 and the MAIT TCR compared to those observed for the lumazines and confirmed the importance of the 2'-hydroxy group for ligand binding and activity. Taken together, this information will assist in the development of future potent agonists and antagonists of MAIT cells.


Subject(s)
Histocompatibility Antigens Class I/metabolism , Lymphocyte Activation/drug effects , Minor Histocompatibility Antigens/metabolism , Mucosal-Associated Invariant T Cells/drug effects , Pteridines/pharmacology , Ribitol/analogs & derivatives , Uracil/analogs & derivatives , Humans , Ligands , Molecular Docking Simulation , Molecular Structure , Mucosal-Associated Invariant T Cells/metabolism , Pteridines/chemical synthesis , Pteridines/chemistry , Receptors, Antigen, T-Cell , Ribitol/chemical synthesis , Ribitol/chemistry , Ribitol/pharmacology , Uracil/chemical synthesis , Uracil/chemistry , Uracil/pharmacology
18.
Nat Commun ; 10(1): 4413, 2019 09 27.
Article in English | MEDLINE | ID: mdl-31562325

ABSTRACT

The synthesis of nucleobases in natural environments, especially in interstellar molecular clouds, is the focus of a long-standing debate regarding prebiotic chemical evolution. Here we report the simultaneous detection of all three pyrimidine (cytosine, uracil and thymine) and three purine nucleobases (adenine, xanthine and hypoxanthine) in interstellar ice analogues composed of simple molecules including H2O, CO, NH3 and CH3OH after exposure to ultraviolet photons followed by thermal processes, that is, in conditions that simulate the chemical processes accompanying star formation from molecular clouds. Photolysis of primitive gas molecules at 10 K might be one of the key steps in the production of nucleobases. The present results strongly suggest that the evolution from molecular clouds to stars and planets provides a suitable environment for nucleobase synthesis in space.


Subject(s)
Adenine/chemistry , Cytosine/chemistry , Hypoxanthine/chemistry , Thymine/chemistry , Uracil/chemistry , Xanthine/chemistry , Adenine/chemical synthesis , Ammonia/chemistry , Carbon Monoxide/chemistry , Cytosine/chemical synthesis , Evolution, Chemical , Extraterrestrial Environment , Hypoxanthine/chemical synthesis , Ice , Methanol/chemistry , Molecular Structure , Photochemical Processes/radiation effects , Thymine/chemical synthesis , Ultraviolet Rays , Uracil/chemical synthesis , Water/chemistry , Xanthine/chemical synthesis
19.
J Org Chem ; 84(8): 4873-4892, 2019 04 19.
Article in English | MEDLINE | ID: mdl-30629443

ABSTRACT

Dasabuvir (1) is an HCV polymerase inhibitor which has been developed as a part of a three-component direct-acting antiviral combination therapy. During the course of the development of the synthetic route, two novel coupling reactions were developed. First, the copper-catalyzed coupling of uracil with aryl iodides, employing picolinamide 16 as the ligand, was discovered. Later, the palladium-catalyzed sulfonamidation of aryl nonaflate 33 was developed, promoted by electron-rich palladium complexes, including the novel phosphine ligand, VincePhos (50). This made possible a convergent, highly efficient synthesis of dasabuvir that significantly reduced the mutagenic impurity burden of the process.


Subject(s)
Antiviral Agents/pharmacology , Enzyme Inhibitors/pharmacology , Hepacivirus/drug effects , Palladium/chemistry , Sulfonamides/pharmacology , Uracil/analogs & derivatives , Viral Nonstructural Proteins/antagonists & inhibitors , 2-Naphthylamine , Antiviral Agents/chemical synthesis , Antiviral Agents/chemistry , Catalysis , Drug Development , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Hepacivirus/enzymology , Microbial Sensitivity Tests , Molecular Structure , Sulfonamides/chemical synthesis , Sulfonamides/chemistry , Uracil/chemical synthesis , Uracil/chemistry , Uracil/pharmacology , Viral Nonstructural Proteins/metabolism
20.
Bioorg Chem ; 83: 500-510, 2019 03.
Article in English | MEDLINE | ID: mdl-30453142

ABSTRACT

The 1H-1,2,3-triazole-originated derivatives of willardiine were obtained by: (i) construction of the 1H-1,2,3-triazole ring in 1,3-dipolar cycloaddition of the uracil-derived azides and the carboxylate-bearing alkynes or α-acylphosphorus ylide, or (ii) N-alkylation of the uracil derivative with the 1H-1,2,3-triazole-4-carboxylate-derived mesylate. The latter method offered: (i) reproducible results, (ii) a significant reduction of amounts of auxiliary materials, (iii) reduction in wastes and (iv) reduction in a number of manual operations required for obtaining the reaction product. Compound 6a exhibited significant binding affinity to hHS1S2I ligand-binding domain of GluR2 receptor (EC50 = 2.90 µM) and decreased viability of human astrocytoma MOG-G-CCM cells in higher extent than known AMPA antagonist GYKI 52466.


Subject(s)
Antineoplastic Agents/pharmacology , Carboxylic Acids/pharmacology , Triazoles/pharmacology , Uracil/analogs & derivatives , Uracil/pharmacology , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Carboxylic Acids/chemical synthesis , Carboxylic Acids/chemistry , Cell Line, Tumor , Cycloaddition Reaction , Humans , Molecular Docking Simulation , Protein Domains , Receptors, AMPA/chemistry , Receptors, AMPA/metabolism , Triazoles/chemical synthesis , Triazoles/chemistry , Uracil/chemical synthesis
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