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1.
ACS Biomater Sci Eng ; 10(6): 3693-3706, 2024 06 10.
Artigo em Inglês | MEDLINE | ID: mdl-38813796

RESUMO

Proteases play a crucial role, not only in physiological, but also in pathological processes, such as cancer, inflammation, arthritis, Alzheimer's, and infections, to name but a few. Their ability to cleave peptides can be harnessed for a broad range of biotechnological purposes. To do this efficiently, it is essential to find an amino acid sequence that meets the necessary requirements, including interdependent factors like specificity, selectivity, cleavage kinetics, or synthetic accessibility. Cleavage sequences from natural substrates of the protease may not be optimal in terms of specificity and selectivity, which is why these frequently require arduous and sometimes unsuccessful optimization such as by iterative exchange of single amino acids. Hence, here we describe the systematic design of protease sensitive linkers (PSLs)─peptide sequences specifically cleaved by a target protease─guided by the mass spectrometry based determination of target protease specific cleavage sites from a proteome-based peptide library. It includes a procedure for identifying bespoke PSL sequences, their optimization, synthesis, and validation and introduces a program that can indicate potential cleavage sites by hundreds of enzymes in any arbitrary amino acid sequence. Thereby, we provide an introduction to PSL design, illustrated by the example of matrix metalloproteinase 13 (MMP13). This introduction can serve as a guide and help to greatly accelerate the development and use of protease-sensitive linkers in diverse applications.


Assuntos
Metaloproteinase 13 da Matriz , Metaloproteinase 13 da Matriz/metabolismo , Metaloproteinase 13 da Matriz/química , Sequência de Aminoácidos , Especificidade por Substrato , Humanos , Peptídeos/química , Peptídeos/metabolismo , Peptídeo Hidrolases/química , Peptídeo Hidrolases/metabolismo , Biblioteca de Peptídeos , Proteólise
2.
Bioorg Med Chem Lett ; 76: 129014, 2022 11 15.
Artigo em Inglês | MEDLINE | ID: mdl-36202189

RESUMO

Starting from an already known MMP-13 inhibitor, 1, we pursued an SAR-approach focusing on optimizing interactions close to the Zn2+ binding site of the enzyme. We found the oxetane containing compound 32 (MMP-13 IC50 = 42 nM), which exhibited complete inhibition of collagenolysis in in vitro studies and an excellent selectivity profile among the MMP family. Interestingly, docking studies propose that the oxetane ring in 32 is oriented towards the Zn2+ ion for chelating the metal ion. Chelating properties of MMP13-inhibitors are often connected with non-selectivity within the enzyme family. Compound 32 demonstrates a rare example where the selectivity can be explained via combinatorial effects of interactions within the S1' loop and a chelating effect of the oxetane moiety. Furthermore, in vivo pharmacokinetic studies were performed demonstrating a concentration of 1.97 µM of 32 within the synovial fluid of the rat knee joint, which makes the compound a promising lead compound for further optimization and development for osteoarthritis.


Assuntos
Éteres Cíclicos , Inibidores de Metaloproteinases de Matriz , Ratos , Animais , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/metabolismo , Inibidores de Metaloproteinases de Matriz/química , Quelantes/farmacologia , Quelantes/química , Zinco/química
3.
Eur J Med Chem ; 224: 113666, 2021 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-34245949

RESUMO

Osteoarthritis (OA) is a chronic disorder that causes damage to the cartilage and surrounding tissues and is characterized by pain, stiffness, and loss of function. Current treatments for OA primarily involve providing only relief of symptoms but does not affect the overall trajectory of the disease. A major goal for treating OA has been to slow down or reverse disease progression. Matrix metalloproteinase-13 (MMP-13) is expressed by chondrocytes and synovial cells in human OA and is thought to play a critical role in cartilage destruction. Herein we report a new, allosteric MMP-13 inhibitor, AQU-019, that has been optimized for potency, metabolic stability, and oral bioavailability through a combination of structure activity relationship (SAR) and deuterium substitution as a potential disease modifying OA drug (DMOAD). The inhibitor was demonstrated to be chondroprotective when injected intraarticular (IA) in the monoiodoacetic acid (MIA) rat model of OA.


Assuntos
Metaloproteinase 13 da Matriz/química , Inibidores de Metaloproteinases de Matriz/uso terapêutico , Osteoartrite/tratamento farmacológico , Amidas/química , Amidas/metabolismo , Amidas/uso terapêutico , Animais , Modelos Animais de Doenças , Meia-Vida , Humanos , Isoenzimas/antagonistas & inibidores , Isoenzimas/metabolismo , Articulações/patologia , Metaloproteinase 13 da Matriz/metabolismo , Inibidores de Metaloproteinases de Matriz/química , Inibidores de Metaloproteinases de Matriz/farmacocinética , Osteoartrite/induzido quimicamente , Osteoartrite/patologia , Pirimidinas/química , Ratos , Relação Estrutura-Atividade
4.
Sci Rep ; 10(1): 17451, 2020 10 15.
Artigo em Inglês | MEDLINE | ID: mdl-33060735

RESUMO

Because inflammation in osteoarthritis (OA) is related to the Toll-like receptor 4 (TLR4) signaling cascades, TLR4 is a reasonable target for developing therapeutics for OA. Thus, we investigated whether TAP2, a peptide antagonist of TLR4, reduces the monoiodoacetate (MIA)-induced arthritic pain and cartilage degradation in rats. TLR4 expression of human OA chondrocytes and synoviocytes and the knee joint tissue of MIA-induced arthritis were evaluated. MIA-induced arthritic model using Sprague-Dawley rats (6 week-old-male) were treated with TAP2, a TLR4 antagonist, and evaluated with behavioral test, immunohistochemistry, and quantitative PCR. TLR4 was highly expressed in the knee joints of patients with OA and the MIA-induced rat model. Further, a single intraarticular injection of TAP2 (25 nmol/rat) molecules targeting TLR4 on day 7 after MIA injection dramatically attenuated pain behavior for about 3 weeks and reduced cartilage loss in the knee joints and microglial activation in the spinal dorsal horns. Likewise, the mRNA levels of TNFα and IL-1ß, reactive oxygen species, and the expression of MMP13 in the knee joints of TAP2-treated rats was significantly decreased by TAP2 treatment compared with the control. Moreover, interestingly, the duration of OA pain relief by TAP2 was much longer than that of chemical TLR4 antagonists, such as C34 and M62812. In conclusion, TAP2 could effectively attenuate MIA-induced arthritis in rats by blocking TLR4 and its successive inflammatory cytokines and MMP13. Therefore, TAP2 could be a prospective therapeutic to treat patients with OA.


Assuntos
Membro 3 da Subfamília B de Transportadores de Cassetes de Ligação de ATP/química , Osteoartrite/tratamento farmacológico , Dor/tratamento farmacológico , Receptor 4 Toll-Like/antagonistas & inibidores , Animais , Artrite Experimental/induzido quimicamente , Artrite Experimental/tratamento farmacológico , Cartilagem Articular/citologia , Células Cultivadas , Condrócitos/citologia , Modelos Animais de Doenças , Humanos , Inflamação , Ácido Iodoacético , Masculino , Metaloproteinase 13 da Matriz/química , Inibidores de Metaloproteinases de Matriz/química , Osteoartrite/induzido quimicamente , Manejo da Dor , Peptídeos/química , Ratos , Ratos Sprague-Dawley , Sinoviócitos/citologia
5.
Molecules ; 25(20)2020 Oct 14.
Artigo em Inglês | MEDLINE | ID: mdl-33066470

RESUMO

In comparison with pristine sinomenine and carborane precursors, the calculations of molecular docking with matrix metalloproteinases (MMPs) and methylcarboranyl-n-butyl sinomenine showed improved interactions. Accordingly, methylcarboranyl-n-butyl sinomenine shows a high potential in the treatment of rheumatoid arthritis (RA) in the presence of slow neutrons. The reaction of potassium salt of sinomenie, which is generated from the deprotonation of sinomenine (1) using potassium carbonate in a solvent of N,N-dimethyl formamide, with 4-methylcarboranyl-n-butyl iodide, (2) forms methylcarboranyl-n-butyl sinomenine (3) in 54.3% yield as a new product. This new compound was characterized by 1H, 13C, and 11B NMR spectroscopy, FT-IR spectroscopy, and elemental analyses to confirm its molecular composition. In addition to molecular docking interactions with MMPs, the in vitro killing effects of 3, along with its toxicity measurements, exhibited its potential to be the new drug delivery agent for boron neutron capture synovectomy (BNCS) and boron neutron capture therapy (BNCT) for the treatment of rheumatoid arthritis (RA) and cancers in the presence of slow neutrons, respectively.


Assuntos
Antineoplásicos/química , Antirreumáticos/química , Antirreumáticos/farmacologia , Terapia por Captura de Nêutron de Boro/métodos , Morfinanos/química , Animais , Antineoplásicos/síntese química , Antineoplásicos/farmacologia , Antirreumáticos/síntese química , Boro/farmacocinética , Linhagem Celular Tumoral , Avaliação Pré-Clínica de Medicamentos , Ensaios de Seleção de Medicamentos Antitumorais , Espectroscopia de Ressonância Magnética , Metaloproteinase 1 da Matriz/química , Metaloproteinase 1 da Matriz/metabolismo , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/metabolismo , Simulação de Acoplamento Molecular , Ratos , Espectroscopia de Infravermelho com Transformada de Fourier , Sinoviócitos/efeitos dos fármacos
6.
J Phys Chem Lett ; 10(15): 4382-4400, 2019 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-31304749

RESUMO

It has been demonstrated that MMP13 enzyme is related to most cancer cell tumors. The world's largest traditional Chinese medicine database was applied to screen for structure-based drug design and ligand-based drug design. To predict drug activity, machine learning models (Random Forest (RF), AdaBoost Regressor (ABR), Gradient Boosting Regressor (GBR)), and Deep Learning models were utilized to validate the Docking results, and we obtained an R2 of 0.922 on the training set and 0.804 on the test set in the RF algorithm. For the Deep Learning algorithm, R2 of the training set is 0.90, and R2 of the test set is 0.810. However, these TCM compounds fly away during the molecular dynamics (MD) simulation. We seek another method: peptide design. All peptide database were screened by the Docking process. Modification peptides were optimized the interaction modes, and the affinities were assessed with ZDOCK protocol and Refine Docked protein protocol. The 300 ns MD simulation evaluated the stability of receptor-peptide complexes. The double-site effect appeared on S2, a designed peptide based on a known inhibitor, when complexed with BCL2. S3, a designed peptide referred from endogenous inhibitor P16, competed against cyclin when binding with CDK6. The MDM2 inhibitors S5 and S6 were derived from the P53 structure and stable binding with MDM2. A flexible region of peptides S5 and S6 may enhance the binding ability by changing its own conformation, which was unforeseen. These peptides (S2, S3, S5, and S6) are potentially interesting to treat cancer; however, these findings need to be affirmed by biological testing, which will be conducted in the near future.


Assuntos
Antineoplásicos/química , Aprendizado Profundo , Aprendizado de Máquina , Modelos Moleculares , Peptídeos/química , Proteínas/química , Algoritmos , Sítios de Ligação , Quinase 6 Dependente de Ciclina/química , Inibidor p16 de Quinase Dependente de Ciclina/química , Bases de Dados de Produtos Farmacêuticos , Bases de Dados de Proteínas , Desenho de Fármacos , Ligantes , Metaloproteinase 13 da Matriz/química , Mutação , Proteínas Proto-Oncogênicas c-bcl-2/química , Proteínas Proto-Oncogênicas c-mdm2/química , Proteína Supressora de Tumor p53/química , Proteína Supressora de Tumor p53/genética
7.
Angew Chem Int Ed Engl ; 58(12): 4051-4055, 2019 03 18.
Artigo em Inglês | MEDLINE | ID: mdl-30615822

RESUMO

De novo drug discovery is still a challenge in the search for potent and selective modulators of therapeutically relevant target proteins. Here, we disclose the unexpected discovery of a peptidic ligand 1 by X-ray crystallography, which was auto-tailored by the therapeutic target MMP-13 through partial self-degradation and subsequent structure-based optimization to a highly potent and selective ß-sheet peptidomimetic inhibitor derived from the endogenous tissue inhibitors of metalloproteinases (TIMPs). The incorporation of non-proteinogenic amino acids in combination with a cyclization strategy proved to be key for the de novo design of TIMP peptidomimetics. The optimized cyclic peptide 4 (ZHAWOC7726) is membrane permeable with an IC50 of 21 nm for MMP-13 and an attractive selectivity profile with respect to a polypharmacology approach including the anticancer targets MMP-2 (IC50 : 170 nm) and MMP-9 (IC50 : 140 nm).


Assuntos
Desenho de Fármacos , Inibidores de Proteases/química , Sítios de Ligação , Cristalografia por Raios X , Ciclização , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/metabolismo , Inibidores de Metaloproteinases de Matriz/síntese química , Inibidores de Metaloproteinases de Matriz/química , Inibidores de Metaloproteinases de Matriz/metabolismo , Simulação de Dinâmica Molecular , Peptídeos Cíclicos/química , Peptídeos Cíclicos/metabolismo , Peptidomiméticos , Inibidores de Proteases/síntese química , Inibidores de Proteases/metabolismo , Inibidores Teciduais de Metaloproteinases/química
8.
Cytokine ; 113: 340-346, 2019 01.
Artigo em Inglês | MEDLINE | ID: mdl-30352759

RESUMO

BACKGROUND: Inhibiting TNF-α is an effective therapy for inflammatory diseases such as rheumatoid arthritis. However, systemic, nondiscriminatory neutralization of TNF-α is associated with considerable adverse effects. METHODS: Here, we developed a trimeric chimeric TNF receptor by linking an N-terminal mouse Acrp30 trimerization domain and an MMP-2/9 substrate sequence to the mouse extracellular domain of TNF receptor 2 followed by a C-terminal mouse tetranectin coiled-coil domain (mouse Acrp-MMP-TNFR-Tn). RESULTS: Here, we show that the Acrp30 trimerization domain inhibited the binding activity of TNFR, possibly by closing the binding site of the trimeric receptor. Cleavage of the substrate sequence by MMP-9, an enzyme highly expressed in inflammatory sites, restored the binding activity of the mouse TNF receptor. We also constructed a recombinant human chimeric TNF receptor (human Acrp-MMP-TNFR-Tn) in which an MMP-13 substrate sequence was used to link the human Acrp and the human TNF receptor 2. Human Acrp-MMP-TNFR-Tn showed reduced binding activity, and MMP-13 digestion recovered its binding activity with TNF-α. CONCLUSION: Acrp-masked chimeric TNF receptors may be able to be used for inflammatory tissue-selective neutralization of TNF-α to reduce the adverse effects associated with systemic neutralization of TNF-α.


Assuntos
Adiponectina , Metaloproteinase 13 da Matriz , Metaloproteinase 2 da Matriz , Metaloproteinase 9 da Matriz , Multimerização Proteica , Receptores Tipo II do Fator de Necrose Tumoral , Proteínas Recombinantes de Fusão , Fator de Necrose Tumoral alfa , Adiponectina/química , Adiponectina/genética , Adiponectina/metabolismo , Animais , Linhagem Celular , Humanos , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/genética , Metaloproteinase 13 da Matriz/metabolismo , Metaloproteinase 2 da Matriz/química , Metaloproteinase 2 da Matriz/genética , Metaloproteinase 2 da Matriz/metabolismo , Metaloproteinase 9 da Matriz/química , Metaloproteinase 9 da Matriz/genética , Metaloproteinase 9 da Matriz/metabolismo , Camundongos , Especificidade de Órgãos , Ligação Proteica , Domínios Proteicos , Receptores Tipo II do Fator de Necrose Tumoral/química , Receptores Tipo II do Fator de Necrose Tumoral/genética , Receptores Tipo II do Fator de Necrose Tumoral/metabolismo , Fator de Necrose Tumoral alfa/química , Fator de Necrose Tumoral alfa/metabolismo
9.
Int J Biol Macromol ; 121: 921-929, 2019 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-30352228

RESUMO

The matrix metallopeptidase 13 (MMP13) is a central regulator of chondrocyte senescence that contributes to the development and progression of osteoarthritis (OA). In the present study, the native inhibitory structure of MMP13 in complex with its natural cognate inhibitor, the tissue inhibitor of metalloproteinases 1 (TIMP1), was modeled at atomic level using a grafting-based structural bioinformatics method with existing crystal structures. The modeled complex structure was then examined in detail, from which a TIMP1 inhibitory site that directly inserts into the active site of MMP13 enzyme was identified. The inhibitory site contains a coiled inhibitory loop (ILP) and a stretched N-terminal tail (NTT); they are highly structured in the intact MMP13-TIMP1 complex interface, but exhibit a large flexibility and intrinsic disorder when split from the interface context. In vitro binding assays demonstrated that the isolated ILP and NTT peptides cannot effectively rebind at the MMP13 active site (Kd > ~100 µM or = n.d.), although they have all key interacting residues in the enzyme inhibition. In silico simulations revealed that splitting of the peptide segments from TIMP1 inhibitory site does not influence the direct intermolecular interaction between MMP13 and the peptides substantially; instead, the large conformational flexibility of these isolated peptides in absence of interface context is primarily responsible for the affinity impairment, which would incur a considerable entropy penalty upon the peptide binding to MMP13. An extended version of ILP peptide, namely eILP (63TPAMESVCGY72), was redesigned with a rational strategy to derive a number of its cyclized counterparts by introducing a disulfide bridge across the peptide two-termini; the redesign reduces the peptide flexibility in free state and constrains the peptide pre-folding to a native-like conformation, which would help the peptide binding with minimized entropy penalty. Binding assays substantiated that the affinity Kd values of four designed cyclic peptides (, , and ) were improved to 23, 67, 42 and 18 µM, respectively, from the 96 µM of linear eILP peptide.


Assuntos
Senescência Celular/efeitos dos fármacos , Condrócitos/efeitos dos fármacos , Condrócitos/patologia , Metaloproteinase 13 da Matriz/metabolismo , Osteoartrite/patologia , Peptídeos/farmacologia , Inibidor Tecidual de Metaloproteinase-1/metabolismo , Sequência de Aminoácidos , Domínio Catalítico , Ciclização , Humanos , Metaloproteinase 13 da Matriz/química , Simulação de Dinâmica Molecular , Peptídeos/química , Inibidor Tecidual de Metaloproteinase-1/química
10.
J Nutr Sci Vitaminol (Tokyo) ; 64(4): 301-304, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30175796

RESUMO

Blackcurrants (Ribes nigrum L.) have various benefits for human health. In particular, a polysaccharide derived from blackcurrant was found to be an immunostimulating food ingredient in a mouse model. We named a polysaccharide derived from blackcurrant cassis polysaccharide (CAPS). In a previous clinical study, we reported that CAPS affects skin dehydration, demonstrating its effectiveness against skin inflammation was related to atopic dermatitis; skin inflammation caused skin dehydration. However, there are no studies regarding CAPS effectiveness against skin dehydration. The current study aimed to investigate CAPS effectiveness against skin dehydration. We further demonstrate the effect of oral administration of CAPS on skin dehydration caused by ultraviolet (UV) irradiation-induced inflammation in mice. We found that CAPS administration suppresses skin dehydration caused by UV irradiation. We also found that CAPS decreases interleukin-6 and matrix metalloproteinase transcription levels in the mouse skin. These results show that CAPS improves skin hydration in UV-irradiated mice.


Assuntos
Anti-Inflamatórios não Esteroides/uso terapêutico , Dermatite Atópica/terapia , Carboidratos da Dieta/uso terapêutico , Frutas/química , Extratos Vegetais/uso terapêutico , Ribes/química , Pele/metabolismo , Animais , Anti-Inflamatórios não Esteroides/administração & dosagem , Anti-Inflamatórios não Esteroides/química , Anti-Inflamatórios não Esteroides/isolamento & purificação , Dermatite Atópica/etiologia , Dermatite Atópica/imunologia , Dermatite Atópica/metabolismo , Carboidratos da Dieta/administração & dosagem , Carboidratos da Dieta/análise , Carboidratos da Dieta/isolamento & purificação , Fibras na Dieta/administração & dosagem , Fibras na Dieta/análise , Fibras na Dieta/uso terapêutico , Suplementos Nutricionais/análise , Feminino , Regulação da Expressão Gênica/efeitos da radiação , Interleucina-6/antagonistas & inibidores , Interleucina-6/genética , Interleucina-6/metabolismo , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/genética , Metaloproteinase 13 da Matriz/metabolismo , Camundongos Pelados , Extratos Vegetais/administração & dosagem , Extratos Vegetais/química , Extratos Vegetais/isolamento & purificação , Prebióticos/administração & dosagem , Prebióticos/análise , Lesões Experimentais por Radiação/imunologia , Lesões Experimentais por Radiação/metabolismo , Lesões Experimentais por Radiação/terapia , Pele/imunologia , Pele/efeitos da radiação , Organismos Livres de Patógenos Específicos , Raios Ultravioleta/efeitos adversos , Água/metabolismo
11.
Mol Med Rep ; 17(3): 3708-3714, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29286096

RESUMO

Matrix metalloproteinase-13 (MMP-13) degrades collagen and other matrix components, thus playing a critical role in the development of osteoarthritis (OA). The expression level of microRNA­9 (miR­9) is significantly depressed in cartilage tissues of OA patients. Furthermore, bioinformatics analysis demonstrated complementary binding sites between miR­9 and MMP­13. The current study, therefore, investigated whether miR­9 is involved in regulating MMP­13 expression levels and OA onset. Cartilage tissues from OA patients and healthy individuals were compared for miR­9, MMP­13 and collagen type II α1 chain (Col2A1) expression levels. A dual luciferase gene reporter assay was performed to evaluate the association between miR­9 and MMP­13. Sodium iodoacetate was injected into the knee joint cartilage tissues to generate the rat OA model. The expression levels of miR­9, MMP­13 and Col2A1 were compared between the model and control rats. In addition, the OA model rats received miR­9 agomir for further expressional assay. Cartilage tissue samples from the OA patients exhibited significantly lower miR­9 and Col2A1 expression levels when compared with the control rats, whilst the expression level of MMP­13 was upregulated. As the target gene of miR­9, MMP­13 is under the targeted regulation of miR­9. The injection of miR­9 agomir into the knee joint cavity significantly depressed MMP­13 expression in the cartilage tissues of OA rats, with reduced collagen degradation and enhanced COL2A1. OA cartilage tissues have lower miR­9 expression and higher MMP­13 expression levels. Thus, miR­9 inhibits the expression level of MMP­13, decreases its inhibitory effects on COL2A1, and therefore contributes to antagonizing OA.


Assuntos
Metaloproteinase 13 da Matriz/metabolismo , MicroRNAs/metabolismo , Osteoartrite/patologia , Regiões 3' não Traduzidas , Animais , Antagomirs/metabolismo , Sequência de Bases , Colágeno Tipo II/metabolismo , Modelos Animais de Doenças , Regulação para Baixo , Células HEK293 , Humanos , Articulação do Joelho/metabolismo , Articulação do Joelho/patologia , Masculino , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/genética , MicroRNAs/antagonistas & inibidores , MicroRNAs/genética , Osteoartrite/metabolismo , Ratos , Ratos Sprague-Dawley , Alinhamento de Sequência
12.
Redox Biol ; 14: 72-81, 2018 04.
Artigo em Inglês | MEDLINE | ID: mdl-28869834

RESUMO

Osteoarthritis (OA) is a degenerative joint disease affecting a large population of people. Although the elevated expression of PKR (double stranded RNA-dependent protein kinase) and MMP-13 (collagenase-3) have been indicated to play pivotal roles in the pathogenesis of OA, the exact mechanism underlying the regulation of MMP-13 by PKR following inflammatory stimulation was relatively unknown. The purpose of this study was to determine the signaling pathway involved in the PKR-mediated induction of MMP-13 after TNF-α-stimulation. In this study, cartilages of knee joint were obtained from OA subjects who underwent arthroplastic knee surgery. Cartilages were used for tissue analysis or for chondrocytes isolation. In results, the upregulated expression of PKR was observed in damaged OA cartilages as well as in TNF-α-stimulated chondrocytes. Phosphorylation of PKC (protein kinase C) was found after TNF-α administration or PKR activation using poly(I:C), indicating PKC was regulated by PKR. The subsequent increased activity of NADPH oxidase led to oxidative stress accumulation and antioxidant capacity downregulation followed by an exaggerated inflammatory response with elevated levels of COX-2 and IL-8 via ERK/NF-κB pathway. Activated ERK pathway also impeded the inhibition of MMP-13 by PPAR-γ. These findings demonstrated that TNF-α-induced PKR activation triggered oxidative stress-mediated inflammation and MMP-13 in human chondrocytes. Unraveling these deregulated signaling cascades will deepen our knowledge of OA pathophysiology and provide aid in the development of novel therapies.


Assuntos
Inflamação/patologia , Metaloproteinase 13 da Matriz/metabolismo , Osteoartrite/patologia , eIF-2 Quinase/metabolismo , Cartilagem Articular/citologia , Células Cultivadas , Condrócitos/citologia , Condrócitos/efeitos dos fármacos , Condrócitos/metabolismo , MAP Quinases Reguladas por Sinal Extracelular/metabolismo , Humanos , Inflamação/metabolismo , Metaloproteinase 13 da Matriz/química , NADPH Oxidases/metabolismo , NF-kappa B/metabolismo , Osteoartrite/metabolismo , Estresse Oxidativo/efeitos dos fármacos , Fosforilação/efeitos dos fármacos , Poli I-C/farmacologia , Proteína Quinase C/metabolismo , Interferência de RNA , Espécies Reativas de Oxigênio/metabolismo , Transdução de Sinais/efeitos dos fármacos , Fator de Necrose Tumoral alfa/farmacologia , Regulação para Cima/efeitos dos fármacos , eIF-2 Quinase/antagonistas & inibidores , eIF-2 Quinase/genética
13.
Biotechniques ; 63(4): 174-180, 2017 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-29048269

RESUMO

Collagen zymography is an SDS-PAGE-based method for detecting both the proenzyme and active forms of collagenases. Although collagen zymography is used for assessment of the matrix metalloproteinases MMP-1 and MMP-13, it can be difficult to detect these collagenases due to technical issues. Moreover, it remains unclear whether the collagenase activity of MMP-8 can be detected by this method. Here, we present an improved collagen zymography method that allows quantification of the activities of MMP-1, MMP-8, and MMP-13. Activities of recombinant collagenases could be detected in collagen zymogram gels copolymerized with 0.3 mg/mL type I collagen extracted from rat tail tendon. This improved method is sensitive enough to detect the activity of as little as 1 ng of collagenase. We generated standard curves for the three collagenases to quantify the collagenolytic activity levels of unknown samples. To validate our improved method, we investigated MMP-1 activity levels in human thyroid cancer (8505C) and normal thyroid (Nthy-ori-3-1) cell lines, finding that the proenzyme and active MMP-1 levels were greater in 8505C cells than in Nthy-ori-3-1 cells. Taken together, our data show that collagen zymography can be used in both molecular and clinical investigations to evaluate collagenase activities in various pathological conditions.


Assuntos
Colágeno Tipo I/química , Eletroforese em Gel de Poliacrilamida/métodos , Metaloproteinase 13 da Matriz/química , Metaloproteinase 1 da Matriz/química , Metaloproteinase 8 da Matriz/química , Animais , Linhagem Celular , Linhagem Celular Tumoral , Precursores Enzimáticos/análise , Precursores Enzimáticos/química , Humanos , Isoenzimas/análise , Isoenzimas/química , Limite de Detecção , Metaloproteinase 1 da Matriz/análise , Metaloproteinase 13 da Matriz/análise , Metaloproteinase 8 da Matriz/análise , Ratos , Proteínas Recombinantes/análise , Proteínas Recombinantes/química
14.
J Med Chem ; 60(13): 5816-5825, 2017 07 13.
Artigo em Inglês | MEDLINE | ID: mdl-28653849

RESUMO

We describe the use of comparative structural analysis and structure-guided molecular design to develop potent and selective inhibitors (10d and (S)-17b) of matrix metalloproteinase 13 (MMP-13). We applied a three-step process, starting with a comparative analysis of the X-ray crystallographic structure of compound 5 in complex with MMP-13 with published structures of known MMP-13·inhibitor complexes followed by molecular design and synthesis of potent but nonselective zinc-chelating MMP inhibitors (e.g., 10a and 10b). After demonstrating that the pharmacophores of the chelating inhibitors (S)-10a, (R)-10a, and 10b were binding within the MMP-13 active site, the Zn2+ chelating unit was replaced with nonchelating polar residues that bridged over the Zn2+ binding site and reached into a solvent accessible area. After two rounds of structural optimization, these design approaches led to small molecule MMP-13 inhibitors 10d and (S)-17b, which bind within the substrate-binding site of MMP-13 and surround the catalytically active Zn2+ ion without chelating to the metal. These compounds exhibit at least 500-fold selectivity versus other MMPs.


Assuntos
Metaloproteinase 13 da Matriz/metabolismo , Inibidores de Metaloproteinases de Matriz/química , Inibidores de Metaloproteinases de Matriz/farmacologia , Quelantes/química , Quelantes/farmacologia , Cristalografia por Raios X , Desenho de Fármacos , Humanos , Metaloproteinase 13 da Matriz/química , Modelos Moleculares , Zinco/química
15.
Methods Mol Biol ; 1579: 259-271, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28299742

RESUMO

Structure-based virtual screening (SBVS) is a common method for the fast identification of hit structures at the beginning of a medicinal chemistry program in drug discovery. The SBVS, described in this manuscript, is focused on finding small molecule hits that can be further utilized as a starting point for the development of inhibitors of matrix metalloproteinase 13 (MMP-13) via structure-based molecular design. We intended to identify a set of structurally diverse hits, which occupy all subsites (S1'-S3', S2, and S3) centering the zinc containing binding site of MMP-13, by the virtual screening of a chemical library comprising more than ten million commercially available compounds. In total, 23 compounds were found as potential MMP-13 inhibitors using Glide docking followed by the analysis of the structural interaction fingerprints (SIFt) of the docked structures.


Assuntos
Inibidores de Metaloproteinases de Matriz/farmacologia , Simulação de Acoplamento Molecular/métodos , Bibliotecas de Moléculas Pequenas/farmacologia , Sítios de Ligação , Biologia Computacional , Cristalografia por Raios X , Avaliação Pré-Clínica de Medicamentos , Ensaios de Triagem em Larga Escala , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/metabolismo , Inibidores de Metaloproteinases de Matriz/química , Modelos Moleculares , Conformação Proteica , Bibliotecas de Moléculas Pequenas/química , Relação Estrutura-Atividade
16.
Acta Orthop Traumatol Turc ; 50(6): 670-673, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27932045

RESUMO

OBJECTIVE: To compare the levels of MMP-13 and TNF-α in late stage osteoarthritis, define their predominant pathways and investigate their correlation with McMaster Universities Arthritis Index scores. PATIENTS AND METHODS: A total of 42 patients (mean age 64 ± 8.8) with grade 3 and grade 4 knee osteoarthritis according to Kellegren- Lawrence criteria and who were scheduled for total knee arthroplasty were enrolled in the study. TNF-alpha and MMP-13 levels were measured preoperatively from venous blood samples and intraoperatively from knee synovial fluid via ELISA. Preoperative and 1 month postoperative knee functions were assessed by McMaster Universities Arthritis Index. RESULTS: Grade 4 synovial fluid MMP-13 (4.76 ± 5.82) was elevated compared to grade 3 (3.95 ± 4.45) (p = 0.438), whereas grade 3 serum MMP-13 (1.128 ± 0.308) was found elevated compared to grade 4 (1.038 ± 0.204) (p = 0.430). Grade 4 serum TNF-α (0.253 ± 0.277) was elevated compared to grade 3 (0.206 ± 0.219) whereas grade 3 synovial fluid TNF-α (0.129 ± 0.052) was elevated compared to grade 4 (0.118 ± 0.014). Positive correlation was observed between synovial fluid MMP-13 levels and postoperative WOMAC scores. Mean serum TNF-α level (0.226 ± 0.246 pg/ml) was found higher compared to synovial level (0.124 ± 1.59), synovial MMP-13 level (4.31 ± 1.24) was found higher compared to serum level (1.089 ± 1.519). CONCLUSION: Despite the systemic increase in TNF-α levels concordant with osteoarthritis grade, MMP-13 levels are elevated via local manner with a significant correlation with WOMAC scores. LEVEL OF EVIDENCE: Level IV, Diagnostic study.


Assuntos
Artroplastia do Joelho/métodos , Metaloproteinase 13 da Matriz/química , Osteoartrite do Joelho/cirurgia , Líquido Sinovial/química , Fator de Necrose Tumoral alfa/química , Idoso , Feminino , Humanos , Masculino , Metaloproteinase 13 da Matriz/sangue , Pessoa de Meia-Idade , Período Perioperatório , Testes Sorológicos , Fator de Necrose Tumoral alfa/sangue
17.
Enzyme Microb Technol ; 92: 9-17, 2016 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-27542739

RESUMO

Collagenase-3 (MMP-13) inhibitors have attracted considerable attention in recent years and have been developed as a therapeutic target for a variety of diseases, including cancer. Matrix metalloproteinases (MMPs) can be inhibited by a multitude of compounds, including hydroxamic acids. Studies have shown that materials and compounds containing trivalent metal ions, particularly potassium hexacyanoferrate (III) (K3[Fe(CN)6]), exhibit cdMMP-13 inhibitory potential with a half maximal inhibitory concentration (IC50) of 1.3µM. The target protein was obtained by refolding the recombinant histidine-tagged cdMMP-13 using size exclusion chromatography (SEC). The secondary structures of the refolded cdMMP-13 with or without metal ions were further analyzed via circular dichroism and the results indicate that upon binding with metal ions, an altered structure with increased domain stability was obtained. Furthermore, isothermal titration calorimetry (ITC) experiments demonstrated that K3[Fe(CN)6]is able to bind to MMP-13 and endothelial cell tube formation tests provide further evidence for this interaction to exhibit anti-angiogenesis potential. To the best of our knowledge, no previous report of an inorganic compound featuring a MMP-13 inhibitory activity has ever been reported in the literature. Our results demonstrate that K3[Fe(CN)6] is useful as a new effective and specific inhibitor for cdMMP-13 which may be of great potential for future drug screening applications.


Assuntos
Ferricianetos/química , Ferricianetos/farmacologia , Metaloproteinase 13 da Matriz/metabolismo , Inibidores de Metaloproteinases de Matriz/química , Inibidores de Metaloproteinases de Matriz/farmacologia , Inibidores da Angiogênese/química , Inibidores da Angiogênese/farmacologia , Domínio Catalítico , Dicroísmo Circular , Estabilidade Enzimática/efeitos dos fármacos , Células Endoteliais da Veia Umbilical Humana , Humanos , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/genética , Modelos Moleculares , Ligação Proteica , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Termodinâmica
18.
Protein Expr Purif ; 127: 16-21, 2016 11.
Artigo em Inglês | MEDLINE | ID: mdl-27338011

RESUMO

Matrix metalloproteinase 13 is one of three mammalian collagenases that are capable of initiating the degradation of interstitial collagens during wound healing. Herein, we report for the first time the molecular cloning of the catalytic domain (CD) of sika deer MMP-13, followed by protein expression in Escherichia coli and purification by affinity chromatography. The final yield was approximately 90.4 mg per liter of growth culture with a purity of 91.6%. The mass recovery during the purification and renaturation were 70.2% and 81.5%, respectively. Using gelatin zymography and a degradation assay, we found that the refolded sika deer MMP-13 (CD) could digest gelatin. The optimal pH and temperature for the enzyme bioactivity was 8.0 and 37 °C, respectively. The Km value for the enzyme-catalyzed digestion of gelatin was 136+/-8 µg/mL, and the Vmax was 4.12 × 10(3) U/µg. sdMMP13 (CD) was able to completely degrade collagen II and gelatin, and partially degrade fibronectin. The sdMMP-13 (CD) activity was significantly inhibited by several chemicals including 1, 10-phenanthroline, EDTA, Fe(2+), Cu(2+), and Mn(2+).


Assuntos
Clonagem Molecular , Cervos/genética , Expressão Gênica , Metaloproteinase 13 da Matriz , Animais , Cromatografia de Afinidade/métodos , Escherichia coli/genética , Escherichia coli/metabolismo , Metaloproteinase 13 da Matriz/biossíntese , Metaloproteinase 13 da Matriz/química , Metaloproteinase 13 da Matriz/genética , Metaloproteinase 13 da Matriz/isolamento & purificação , Domínios Proteicos , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação
19.
Acta Orthop Traumatol Turc ; 50(3): 356-61, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27130394

RESUMO

OBJECTIVE: The aim of this study was to compare serum and synovial fluid levels of matrix metalloproteinase-13 (MMP-13) and tumor necrosis factor-alpha (TNF-α) in 2 stages of osteoarthritis, and investigate their correlation with Western Ontario and McMaster Universities Arthritis Index (WOMAC) scores. METHODS: Forty-two patients (mean age: 64±8.8 years) with grade 3 and grade 4 knee osteoarthritis according to Kellgren-Lawrence criteria were enrolled in the study and underwent total knee arthroplasty. TNF-α and MMP-13 levels were measured preoperatively from venous blood samples and intraoperatively from knee synovial fluid via enzyme-linked immunosorbent assay. Preoperative and 1-month postoperative knee functions were assessed by WOMAC. RESULTS: Grade 4 synovial fluid MMP-13 (4.76±5.82 pg/ml) was elevated compared to grade 3 (3.95±4.45), whereas grade 3 serum MMP-13 (1.128±0.308 pg/ml) was found elevated compared to grade 4 (1.038±0.204) (p=0.438, p=0.430, respectively). Grade 4 serum TNF-α (0.253±0.277) was elevated compared to grade 3 (0.206±0.219), whereas grade 3 synovial fluid TNF-α (0.129±0.052) was elevated compared to grade 4 (0.118±0.014). Positive correlation was observed between synovial fluid MMP-13 levels and postoperative WOMAC scores. Mean serum TNF-α (0.226±0.246 pg/ml) was elevated compared to synovial levels (0.124±1.59), and synovial MMP-13 (4.31±1.24) was elevated compared to serum levels (1.089±1.519). CONCLUSION: Despite the systemic increase in TNF-α levels concordant with osteoarthritis grade, MMP-13 levels are elevated via local manner, with a significant correlation with WOMAC scores.


Assuntos
Artroplastia do Joelho , Metaloproteinase 13 da Matriz/química , Osteoartrite do Joelho/metabolismo , Líquido Sinovial/química , Fator de Necrose Tumoral alfa/química , Idoso , Feminino , Humanos , Masculino , Metaloproteinase 13 da Matriz/sangue , Pessoa de Meia-Idade , Sorologia , Fator de Necrose Tumoral alfa/sangue
20.
Matrix Biol ; 56: 57-73, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27084377

RESUMO

Matrix metalloproteinase 13 (MMP-13) degrades collagenous extracellular matrix and its aberrant activity associates with diseases such as arthritis, cancer, atherosclerosis and fibrosis. The wide range of MMP-13 proteolytic capacity suggests that it is a powerful, potentially destructive proteinase and thus it has been believed that MMP-13 is not produced in most adult human tissues in the steady state. Present study has revealed that human chondrocytes isolated from healthy adults constitutively express and secrete MMP-13, but that it is rapidly endocytosed and degraded by chondrocytes. Both pro- and activated MMP-13 bind to clusters II and III of low-density lipoprotein (LDL) receptor-related protein 1 (LRP1). Domain deletion studies indicated that the hemopexin domain is responsible for this interaction. Binding competition between MMP-13 and ADAMTS-4, -5 or TIMP-3, which also bind to cluster II, further shown that the MMP-13 binding site within cluster II is different from those of ADAMTS-4, -5 or TIMP-3. MMP-13 is therefore co-endocytosed with ADAMTS-5 and TIMP-3 by human chondrocytes. These findings indicate that MMP-13 may play a role on physiological turnover of cartilage extracellular matrix and that LRP1 is a key modulator of extracellular levels of MMP-13 and its internalization is independent of the levels of ADAMTS-4, -5 and TIMP-3.


Assuntos
Proteína ADAMTS5/metabolismo , Condrócitos/enzimologia , Proteína-1 Relacionada a Receptor de Lipoproteína de Baixa Densidade/metabolismo , Metaloproteinase 13 da Matriz/metabolismo , Inibidor Tecidual de Metaloproteinase-3/metabolismo , Proteína ADAMTS5/química , Ligação Competitiva , Endocitose , Células HEK293 , Humanos , Proteína-1 Relacionada a Receptor de Lipoproteína de Baixa Densidade/química , Metaloproteinase 13 da Matriz/química , Ligação Proteica , Domínios e Motivos de Interação entre Proteínas , Transporte Proteico , Inibidor Tecidual de Metaloproteinase-3/química
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