Identification of candidate genes for developmental colour agnosia in a single unique family.

Colour agnosia is a disorder that impairs colour knowledge (naming, recognition) despite intact colour perception. Previously, we have identified the first and only-known family with hereditary developmental colour agnosia. The aim of the current study was to explore genomic regions and candidate genes that potentially cause this trait in this family. For three family members with developmental colour agnosia and three unaffected family members CGH-array analysis and exome sequencing was performed, and linkage analysis was carried out using DominantMapper, resulting in the identification of 19 cosegregating chromosomal regions. Whole exome sequencing resulted in 11 rare coding variants present in all affected family members with developmental colour agnosia and absent in unaffected members. These variants affected genes that have been implicated in neural processes and functions (CACNA2D4, DDX25, GRINA, MYO15A) or that have an indirect link to brain function, development or disease (MAML2, STAU1, TMED3, RABEPK), and a remaining group lacking brain expression or involved in non-neural traits (DEPDC7, OR1J1, OR8D4). Although this is an explorative study, the small set of candidate genes that could serve as a starting point for unravelling mechanisms of higher level cognitive functions and cortical specialization, and disorders therein such as developmental colour agnosia.

Dispersed white roots in red beetroot influence the accuracy of root identification based on colours for intercropping studies.

PURPOSE: Beetroot is a model crop for studying root competition in intercropping systems because its red-coloured roots facilitate non-destructive visual discrimination with other root systems of intercropped plants. However, beetroot also has white roots, which could alter how root competition is interpreted. Here we investigated the quantity of white versus red roots in beetroot to quantify the effect of this phenomenon. METHODS: Beetroot was mono-cropped or inter-cropped with white cabbage in a field trial. The distribution of beetroot roots was recorded to 2.5 m soil depth on three dates following the minirhizotron method. Roots in each 0.5 m soil layer were counted and categorised into groups based on colour (white roots, coloured roots, and white roots traced back to be coloured) to investigate the influence of white roots on accuracy of root registration. A pot experiment was conducted with three cultivars to verify if white roots are a general characteristic of beetroot. RESULTS: White roots in mono-cropped beetroot represented 2.5-4.8% of total roots, on average, across the rooted soil profile. However, white roots represented 6.9% and 11.6% of total roots in the deepest soil layer during August and October, respectively. White roots caused mono-cropped beetroot roots to be underestimated by 1-22% based on root colour discrimination. However, tracing white roots backwards and forwards to coloured parts of roots reduced underestimates to 0.5-15%. Intercropping did not influence the traceability of white roots compared to monocropping. The highest occurrence of white roots appeared during the early growth period and in the deepest soil layers, indicating a linkage to younger roots or higher root proliferation rates. CONCLUSION: Beetroot represents a model crop for visual studies linking eco-physiology and root proliferation. The white roots of beetroot must be incorporated by studies of root competition in intercropping systems that use colour as a criterion.

Characterization of Volatile Organic Compounds in Five Celery (Apium graveolens L.) Cultivars with Different Petiole Colors by HS-SPME-GC-MS.

Celery (Apium graveolens L.) is an important vegetable crop cultivated worldwide for its medicinal properties and distinctive flavor. Volatile organic compound (VOC) analysis is a valuable tool for the identification and classification of species. Currently, less research has been conducted on aroma compounds in different celery varieties and colors. In this study, five different colored celery were quantitatively analyzed for VOCs using HS-SPME, GC-MS determination, and stoichiometry methods. The result revealed that γ-terpinene, d-limonene, 2-hexenal,-(E)-, and ß-myrcene contributed primarily to the celery aroma. The composition of compounds in celery exhibited a correlation not only with the color of the variety, with green celery displaying a higher concentration compared with other varieties, but also with the specific organ, whereby the content and distribution of volatile compounds were primarily influenced by the leaf rather than the petiole. Seven key genes influencing terpenoid synthesis were screened to detect expression levels. Most of the genes exhibited higher expression in leaves than petioles. In addition, some genes, particularly AgDXS and AgIDI, have higher expression levels in celery than other genes, thereby influencing the regulation of terpenoid synthesis through the MEP and MVA pathways, such as hydrocarbon monoterpenes. This study identified the characteristics of flavor compounds and key aroma components in different colored celery varieties and explored key genes involved in the regulation of terpenoid synthesis, laying a theoretical foundation for understanding flavor chemistry and improving its quality.

Characteristics of Phenolic Compounds in Peucedanum japonicum According to Various Stem and Seed Colors.

Total polyphenol and total flavonoid assays were performed to characterize the relationships between the color of Peucedanum japonicum (PJ) seed coat and stem and the content of phytochemical compounds. The samples were divided into two groups based on their stem and seed coat color, with each group containing 23 samples. The stem color group was subdivided into green, light red, and red, whereas the seed coat color group was divided into light brown, brown, and dark brown. In the stem color group, the light red stems exhibited the highest content of phytochemical compounds, with levels over 10% higher than those of the stems of the other colors. Moreover, among the top ten samples with the highest total polyphenol content, eight samples were light red, and the light red group also exhibited the highest total flavonoid content among the examined color groups. In terms of the seed coat color, the plants grown from dark brown seeds exhibited the highest contents of both total polyphenols and total flavonoids. In conclusion, PJ plants with dark brown seeds and light red stems contained the highest levels of phytochemical compounds. Collectively, our findings provide a valuable basis for future seed selection of PJ for pharmaceutical purposes.

Poster Session: Comparison of brightness and vividness of colors with different background colors in PCCS.

The purpose of this study was to compare the brightness and vividness of color on different-colored backgrounds. The stimuli were 173 patches of colors lying within the Practical Color Co-ordinate System (PCCS). The backgrounds were three achromatic colors: white, mid-gray, and black. Each color patch was pasted on mounts colored each of the background colors, making 519 combinations. Participants evaluated the stimuli on scales of bright to dark (brightness) and vivid to dull (vividness) using the Visual Analog Scale app on an iPad. They viewed the stimuli in a D65 standard light source booth in a dark room. The brightness and vividness scores for the three background colors were compared using Bonferroni correction for multiple comparisons for each color. It was found that, for both brightness and vividness scores, there were considerably smaller differences between a white and a black background than between a black and a gray background or a white and a gray background. Color bias was shown, with significant differences arising compared to the PCCS tone. Brightness and vividness evaluations were correlated; thus, they were integrated using Principal Component Analysis. The loading of the first principal component was 0.826, and this new integrated dimension was termed "Brilliantness."

Poster Session: Learned rapid adaptation to environmental color changes generalize to a large range of colors.

When the environment changes color, vision adapts, and the world gradually appears less tinted. For repeated color changes, vision may learn to adapt faster to maintain accurate perception. We previously reported that wearing red glasses repeatedly caused the world to appear less and less reddish when the glasses were first put on, as measured by the appearance of unique yellow. Here, we tested the appearance of a larger range of colors. 13 observers wore red glasses for 5hr/day for 5 days. Observers were tested with pairs of 1.5 deg filled color circles, centered within a 6deg black square on a background image. 13 colors were chosen from LAB space comprising unique and intermediate hues at two contrast levels, and one gray. Observers rated the difference between each possible color pair on a scale of 0 to 9. Observers performed the task before and immediately after putting the glasses on, and after 25, 50 and 75 min of wear. Wearing red glasses caused all colors to appear reddish and be rated as relatively similar. As observers adapted, colors gradually regained more normal appearance, and the similarity between color pairs decreased. Critically, over days, color pairs appeared more dissimilar immediately after putting on the glasses (p<1e-6). Multi-dimensional scaling analysis of the similarity data revealed a uniform expansion of color space across days. Thus, observers learned to immediately adjust their perception of many colors with repeated experience.

A Unique Case of Dark Brown Plasma: Why Colour Variation should be Reported.

The normal physiological colour of plasma and urine ranges from yellow to straw-coloured. In this case report, we describe the occurrence of unusual, dark brown-coloured plasma and cola-coloured urine in a 42-year-man admitted to the Emergency Department. The patient presented with high-grade fever (102oF), chills, nausea, vomiting, dark stools, and dark urine for three days. The plasma was found to be dark brown in colour. He was diagnosed with Dengue hemorrhagic fever (DHF) and rhabdomyolysis (RM). He was closely monitored and treated successfully at our hospital. This case highlights the importance of plasma colour variations and also sheds light on a rare cause of dark brown-coloured plasma. Every case of brown colouration of the plasma must be promptly reported to the clinician and must also be mentioned in the patient report as this will help in timely diagnosis and favourable patient outcomes. Key Words: Blood plasma, Urine, Dengue fever, Rhabdomyolysis.

Half a century of systematic research on heat-induced colour changes in bone - A review.

Skeletal human remains presenting heat-induced changes have been a focus of study for a long time. However, there is still a long way to go for the anthropologists to be able to fully interpret and understand these changes. Heat-induced colour modifications are one of the least understood phenomena in bone, displaying a variety of exceptions (e.g., tints of yellow, orange, blue, green, pink, and red) to the expected colour variations that bone can produce when exposed to high temperatures (i.e., ivory, brown, black, various shades of grey, and white). In addition to these, there is a lack of uniformization in the literature regarding the methods to determine the exact colourations observed and the nomenclature used, giving way to subjective descriptions. However, commitment to more objective and reliable methods is visible in more recent research. In this review, we compiled data published in the literature throughout the years to portray the state of the art regarding the potential of heat-induced colour changes for inferring the circumstances of death and the applicability of these methods in the legal framework.

Preliminary study of chromosome aberrations using Giemsa, two-colour fish, and micronucleus assays in lymphocytes of individuals living in elevated radon concentration areas.

The frequencies of unstable and stable chromosome aberrations and micronuclei were examined in peripheral blood samples from 10 individuals living in elevated radon concentration areas (Takandeang Village, Mamuju, Indonesia). Blood samples from 10 people living in Topoyo Village were used as a control group. For unstable chromosome aberration analysis, a dicentric chromosome assay was conducted using conventional Giemsa staining. Chromosomal painting of chromosomes 1 and 4 using the fluorescence in situ hybridisation technique was also applied to four subjects to assess the stable chromosome aberration. Our study showed no significant increases across all groups in dicentric and other unstable chromosome aberrations, such as rings and acentric fragments. Translocations were found in one person from Takandeang Village and two Topoyo Village inhabitants. The translocations found in the subjects from Takandeang Village were due more to aging factors than to radon exposure. The number of micronuclei per 1000 binucleus cells in Takandeang Village inhabitants was not significantly different than that in the control group (p = 0.943). A more comprehensive analysis should be conducted in a subsequent study by increasing the number of study donors and the number of metaphases to be analysed in both dicentric chromosome assay and fluorescence in situ hybridisation assays. Such research could provide valid information on the cytogenetic effects of elevated indoor radon exposure.

The origins of colour patterns in fossil insects revealed by maturation experiments.

Many fossil insects show monochromatic colour patterns that may provide valuable insights into ancient insect behaviour and ecology. Whether these patterns reflect original pigmentary coloration is, however, unknown, and their formation mechanism has not been investigated. Here, we performed thermal maturation experiments on extant beetles with melanin-based colour patterns. Scanning electron microscopy reveals that melanin-rich cuticle is more resistant to degradation than melanin-poor cuticle: with progressive maturation, melanin-poor cuticle regions experience preferential thinning and loss, yet melanin-rich cuticle remains. Comparative analysis of fossil insects with monotonal colour patterns confirms that the variations in tone correspond to variations in preserved cuticle thickness. These preserved colour patterns can thus be plausibly explained as melanin-based patterning. Recognition of melanin-based colour patterns in fossil insects opens new avenues for interpreting the evolution of insect coloration and behaviour through deep time.

Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits.

Chaetodontidae, known as butterflyfishes, are typical fish in coral ecosystems, exhibiting remarkable interspecific differences including body colour patterns and feeding ecology. In this study, we report genomes of three butterflyfish species (Chelmon rostratus, Chaetodon trifasciatus and Chaetodon auriga) and a closely related species from the Pomacanthidae family, Centropyge bicolour, with an average genome size of 65,611 Mb. Chelmon rostratus, comprising 24 chromosomes assembled to the chromosome level, could be served as a reference genome for butterflyfish. By conducting a collinearity analysis between butterflyfishes and several fishes, we elucidated the specific and conserved genomic features of butterflyfish, with particular emphasis on novel genes arising from tandem duplications and their potential functions. In addition to the two melanocyte-specific tyr genes commonly found in fish, we found the gene tyrp3, a new tyrosinase-related proteins gene in the reef fish, including butterflyfish and clownfish, implicating their involvement in the pigmentation diversity of fish. Additionally, we observed a tandem duplication expansion of three copies of nell1 gene in C. rostratus genome, which likely contribute to its unique jaw development and distinctive morphology of its sharp mouth. These results provided valuable genomic resources for further investigations into the genetic diversity and evolutionary adaptations of reef fish.

Tracking the flight and landing behaviour of western flower thrips in response to single and two-colour cues.

Real-time 3D tracking and high-speed videography was used to examine the behaviour of a worldwide greenhouse pest, the western flower thrips (WFT), in response to different colours in the context of improving trap design. Measurements were taken of the number of landings on, and flight activity near, a lamp containing two LEDs of either the same colour or a combination of two colours presented side by side. Main findings show that landing patterns of WFT are different between colours, with landings on UV(+ red) as highly attractive stimulus being mostly distributed at the bottom half of the lamp, while for yellow also as very attractive and green as a 'neutral' stimulus, landings were clearly on the upper rim of the lamp. Additionally, a positive interaction with the UV-A(+ red) and yellow combination elicited the highest number of landings and flight time in front of the LED lamp. Conversely, a negative interaction was observed with decreased landings and flight time found for yellow when blue was present as the adjacent colour. Overall, differences between treatments were less obvious for flight times compared to number of landings, with tracking data suggesting that WFT might use different colours to orientate at different distances as they approach a visual stimulus.

Visual ecology: How glossy colours shine and confuse.

Most colours in nature are matte, but across the tree of life glossiness has evolved numerous times, suggesting that glossiness can be beneficial. Recent research finds that glossiness may confuse observers and protect against predators.

A three-colour stress biosensor reveals multimodal response in single cells and spatiotemporal dynamics of biofilms.

The plethora of stress factors that can damage microbial cells has evolved sophisticated stress response mechanisms. While existing bioreporters can monitor individual responses, sensors for detecting multimodal stress responses in living microorganisms are still lacking. Orthogonally detectable red, green, and blue fluorescent proteins combined in a single plasmid, dubbed RGB-S reporter, enable simultaneous, independent, and real-time analysis of the transcriptional response of Escherichia coli using three promoters which report physiological stress (PosmY for RpoS), genotoxicity (PsulA for SOS), and cytotoxicity (PgrpE for RpoH). The bioreporter is compatible with standard analysis and Fluorescent Activated Cell Sorting (FACS) combined with subsequent transcriptome analysis. Various stressors, including the biotechnologically relevant 2-propanol, activate one, two, or all three stress responses, which can significantly impact non-stress-related metabolic pathways. Implemented in microfluidic cultivation with confocal fluorescence microscopy imaging, the RGB-S reporter enabled spatiotemporal analysis of live biofilms revealing stratified subpopulations of bacteria with heterogeneous stress responses.

Evolutionary predictors of the specific colors of birds.

Animal coloration is one of the most conspicuous aspects of human-perceived organismal diversity, yet also one of the least understood. In particular, explaining why species have specific colors (e.g., blue vs. red) has proven elusive. Here, we quantify for nearly all bird species, the proportion of the body covered by each of 12 human-visible color categories, and test whether existing theory can predict the direction of color evolution. The most common colors are black, white, gray and brown, while the rarest are green, blue, purple, and red. Males have more blue, purple, red, or black, whereas females have more yellow, brown, or gray. Sexual dichromatism is partly due to sexual selection favoring ornamental colors in males but not in females. However, sexual selection also correlated positively with brown in both sexes. Strong social selection favors red and black, colors used in agonistic signaling, with the strongest effects in females. Reduced predation risk selects against cryptic colors (e.g., brown) and favors specific ornamental colors (e.g., black). Nocturnality is mainly associated with brown. The effects of habitat use support the sensory drive theory for camouflage and signaling. Darker colors are more common in species living in wet and cold climates, matching ecogeographical rules. Our study unambiguously supports existing theories of color evolution across an entire class of vertebrates, but much variation remains unexplained.

Do loggerhead sea turtle (Caretta caretta) gut contents reflect the types, colors and sources of plastic pollution in the Southwest Indian Ocean?

We analyzed plastic debris ingested by loggerheads from bycatch between 2007 and 2021 in the Southwest Indian Ocean (SWIO). We also analyzed plastic debris accumulated on beaches of the east coast of Madagascar as a proxy for ocean plastics to compare the characteristics of beached plastics and plastic ingested by turtles. We conducted a "brand audit" of the plastics to determine their country of origin. An oceanic circulation model was used to identify the most likely sources of plastics in the SWIO. In total, 202 of the 266 loggerheads analyzed had ingested plastics. Plastics categorized as "hard" and "white" were equally dominant in loggerheads and on beaches, suggesting no diet selectivity. Both the brand audit and circulation modeling demonstrated that Southeast Asia is the main source of plastic pollution in the region. This study demonstrates that loggerheads can be used as bioindicators of plastic pollution in the SWIO.

Comparison of the colour accuracy of a single-lens reflex camera and a smartphone camera in a clinical context.

OBJECTIVES: This study aimed to investigate the colour accuracy of digital photographs captured by a single-lens reflex (SLR) camera and a smartphone camera in a clinical setting. METHODS: Dentate subjects were recruited, and their maxillary anterior teeth were photographed along with a colour target and a dental shade guide. There were eight groups: Group 1: SLR camera with a 100 mm macro-lens and a ring-flash (SLRC); Group 2: SLRC with a polarizer; Group 3: SLRC with white-balance calibration; Group 4: SLRC with a polarizer and white-balance calibration. Groups 5 to 8 were similar to Groups 1 to 4, except a smartphone camera and an external light source (SC) were used. The CIE LAB coordinates of the colour target, shade guide, and centre of the maxillary right central incisor (tooth 11) in the digital photographs were retrieved. The colour difference ΔE=[(ΔL*)2+(Δa*)2+(Δb*)2]1/2 to the reference colour coordinates or the reading of the dental spectrophotometer was calculated. The results were analysed by the Kruskal-Wallis test at α=0.05 with Bonferroni correction. RESULTS: Thirty-nine subjects were photographed. SLRC with a polarizer showed the largest ΔE in this study (P<0.001). When capturing tooth 11, SLRC with calibrated white-balance resulted in the smallest ΔE in this study (P<0.001), and the use of a polarizer and/or calibrated white-balance did not result in a smaller ΔE than that of SC alone (P>0.001). CONCLUSION: Calibration for white-balance is recommended for the SLRC. The use of a polarizer does not show an improvement in colour accuracy. SC alone may be sufficient for intraoral photography. CLINICAL SIGNIFICANCE: When capturing intraoral photography using a single-lens reflex camera, it is recommended to calibrate the white-balance. The use of a polarizer does not significantly improve colour accuracy. However, a smartphone camera with an external light source can serve as a viable alternative.

The Diversity of Strategies Used in Working Memory for Colors, Orientations, and Positions: A Quantitative Approach to a First-Person Inquiry.

The study of individual experience during the performance of a psychological task using a phenomenological approach is a relatively new area of research. The aim of this paper was to combine first- and third-person approaches to investigate whether the strategies individuals use during a working memory task are associated with specific task conditions, whether the strategies combine to form stable patterns, and whether the use of specific strategies is related to task accuracy. Thirty-one participants took part in an experiment in which they were instructed to remember colors, orientations, or positions of stimuli presented in a change detection task. After every 7th-15th trial, participants took part in an in-depth phenomenological interview in which they described their experiences during the trial that immediately preceded the interview. Qualitative analysis revealed a set of 18 strategies that participants used while performing the task, which we divided into active and passive strategies of encoding, maintenance, and retrieval. Quantitative analysis revealed that while many strategies were used in all task conditions, some strategies and their combinations may be better suited to the specific task demands, while others are more general in nature. The results also suggest a distinction between strategies for encoding object identity and spatial features. Finally, our results did not provide robust evidence for a relationship between specific strategies and task accuracy.

Colour information biases facial age estimation and reduces inter-observer variability.

Age estimation is a perceptual task that people perform automatically and effortlessly on a daily basis. Colour has been identified as one of the facial cues that contributes to age perception. To investigate further the role of colour in age perception, we manipulated the chromatic content of facial images holistically. In Experiment 1, images were shown in colour or grey scale; in Experiment 2, images were shown with red-green contrast increased or decreased; in Experiment 3, images were shown with modified yellow-blue contrast. We examined whether the presence of chromatic information biases the perception of age and/or affects inter-observer variability in age judgements, and whether specific chromatic information affects the perception of age. We found that the same face tended to be judged as younger with increased red-green contrast compared to decreased red-green contrast, suggesting that red-green contrast directly affects age perception. Inter-observer variability in age ratings was significantly lower when participants were asked to rate colour compared with grey scale versions of images. This finding indicates that colour carries information useful cues for age estimation.