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1.
Molecules ; 28(5)2023 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-36903539

RESUMO

Non-Hodgkin's lymphomas are a diverse collection of lymphoproliferative cancers that are much less predictable than Hodgkin's lymphomas with a far greater tendency to metastasize to extranodal sites. A quarter of non-Hodgkin's lymphoma cases develop at extranodal sites and the majority of them involve nodal and extranodal sites. The most common subtypes include follicular lymphoma, chronic/small lymphocytic leukaemia, mantel cell lymphoma, and marginal zone lymphoma. Umbralisib is one of the latest PI3Kδ inhibitors in clinical trials for several hematologic cancer indications. In this study, new umbralisib analogues were designed and docked to the active site of PI3Kδ, the main target of the phosphoinositol-3-kinase/Akt/mammalian target of the rapamycin pathway (PI3K/AKT/mTOR). This study resulted in eleven candidates, with strong binding to PI3Kδ with a docking score between -7.66 and -8.42 Kcal/mol. The docking analysis of ligand-receptor interactions between umbralisib analogues bound to PI3K showed that their interactions were mainly controlled by hydrophobic interactions and, to a lesser extent, by hydrogen bonding. In addition, the MM-GBSA binding free energy was calculated. Analogue 306 showed the highest free energy of binding with -52.22 Kcal/mol. To identify the structural changes and the complexes' stability of proposed ligands, molecular dynamic simulation was used. Based on this research finding, the best-designed analogue, analogue 306, formed a stable ligand-protein complex. In addition, pharmacokinetics and toxicity analysis using the QikProp tool demonstrated that analogue 306 had good absorption, distribution, metabolism, and excretion properties. Additionally, it has a promising predicted profile in immune toxicity, carcinogenicity, and cytotoxicity. In addition, analogue 306 had stable interactions with gold nanoparticles that have been studied using density functional theory calculations. The best interaction with gold was observed at the oxygen atom number 5 with -29.42 Kcal/mol. Further in vitro and in vivo investigations are recommended to be carried out to verify the anticancer activity of this analogue.


Assuntos
Leucemia Linfocítica Crônica de Células B , Linfoma não Hodgkin , Nanopartículas Metálicas , Humanos , Inibidores de Fosfoinositídeo-3 Quinase , Fosfatidilinositol 3-Quinases , Simulação de Dinâmica Molecular , Ouro/uso terapêutico , Simulação de Acoplamento Molecular , Proteínas Proto-Oncogênicas c-akt , Ligantes , Teoria da Densidade Funcional , Linfoma não Hodgkin/tratamento farmacológico , Leucemia Linfocítica Crônica de Células B/tratamento farmacológico
2.
Environ Sci Technol ; 57(9): 3951-3961, 2023 03 07.
Artigo em Inglês | MEDLINE | ID: mdl-36809928

RESUMO

Heterogeneous peroxymonosulfate (PMS) treatment is recognized as an effective advanced oxidation process (AOP) for the treatment of organic contaminants. Quantitative structure-activity relationship (QSAR) models have been applied to predict the oxidation reaction rates of contaminants in homogeneous PMS treatment systems but are seldom applied in heterogeneous treatment systems. Herein, we established QSAR models updated with density functional theory (DFT) and machine learning approaches to predict the degradation performance for a series of contaminants in heterogeneous PMS systems. We imported the characteristics of organic molecules calculated using constrained DFT as input descriptors and predicted the apparent degradation rate constants of contaminants as the output. The genetic algorithm and deep neural networks were used to improve the predictive accuracy. The qualitative and quantitative results from the QSAR model for the degradation of contaminants can be used to select the most appropriate treatment system. A strategy for selection of the optimum catalyst for PMS treatment of specific contaminants was also established according to the QSAR models. This work not only increases our understanding of contaminant degradation in PMS treatment systems but also highlights a novel QSAR model to predict the degradation performance in complicated heterogeneous AOPs.


Assuntos
Peróxidos , Relação Quantitativa Estrutura-Atividade , Teoria da Densidade Funcional , Aprendizado de Máquina
3.
Environ Sci Technol ; 57(9): 3875-3882, 2023 03 07.
Artigo em Inglês | MEDLINE | ID: mdl-36825690

RESUMO

CeO2 has attracted much attention in the field of selective catalytic reduction of NO with NH3 (NH3-SCR). However, poor low-temperature activity and a narrow operation window restrict the industrial application of Ce-based oxide catalysts. Herein, the low-temperature NH3-SCR activity of Ce-based oxide catalysts was dramatically improved by Mn doping, and the mechanism was elucidated at the atomic level by experimental measurements and density functional theory calculations. We found that the addition of Mn significantly promoted the formation of surface oxygen vacancies. The oxygen vacancies easily captured O2 in air and formed active oxygen species (superoxide and peroxide) on the surface. The surface active oxygen species efficiently oxidized NO into NO2 and then facilitated the "fast SCR" reaction. This study provides atomic-level insights into the promotion of the NH3-SCR activity over Mn-Ce composite oxides and is beneficial for the development of low-temperature Ce-based catalysts.


Assuntos
Amônia , Óxidos , Temperatura , Oxirredução , Espécies Reativas de Oxigênio , Teoria da Densidade Funcional , Catálise , Oxigênio
4.
J Colloid Interface Sci ; 638: 26-38, 2023 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-36731216

RESUMO

The electrochemical nitrate reduction reaction (NitRR) affords a sustainable way for nitrate mitigation and ammonia synthesis, but there are still some problems such as poor nitrate conversion, low ammonia selectivity, and slow reaction kinetics. A clear structure-performance relationship is essential for designing efficient catalysts and understanding the reaction mechanisms. Herein, ultrathin nickel metal-organic framework (Ni-MOF) nanosheets supported on Ni foam featuring a well-defined stable structure, large electrochemically active surface area, and low electron transport resistance were prepared by a one-step solvothermal process. At -1.4 V, the nitrate reduction, rate constant, ammonia selectivity, and yield reached 96.4%, 0.448 h-1, 80%, and 110.13 ug·h-1·cm-2, respectively. Experimental and theoretical studies demonstrated that the hydroxyl-ligated Ni atoms exhibited higher nitrate adsorption properties and lower activation energy towards NitRR compared to carboxylic acid-ligated Ni atoms. Mechanism investigations revealed a nitrate-to-ammonia reaction pathway involving multiple intermediate species on Ni-MOF nanosheet catalysts. This work offers a new avenue to construct highly efficient electrocatalysts for the selective transformation of nitrate to valuable ammonia.


Assuntos
Estruturas Metalorgânicas , Nitratos , Amônia , Níquel , Teoria da Densidade Funcional
5.
Biosensors (Basel) ; 13(2)2023 Feb 11.
Artigo em Inglês | MEDLINE | ID: mdl-36832023

RESUMO

Opportune sensing of ammonia (NH3) gas is industrially important for avoiding hazards. With the advent of nanostructured 2D materials, it is felt vital to miniaturize the detector architecture so as to attain more and more efficacy with simultaneous cost reduction. Adaptation of layered transition metal dichalcogenide as the host may be a potential answer to such challenges. The current study presents a theoretical in-depth analysis regarding improvement in efficient detection of NH3 using layered vanadium di-selenide (VSe2) with the introduction of point defects. The poor affinity between VSe2 and NH3 forbids the use of the former in the nano-sensing device's fabrications. The adsorption and electronic properties of VSe2 nanomaterials can be tuned with defect induction, which would modulate the sensing properties. The introduction of Se vacancy to pristine VSe2 was found to cause about an eight-fold increase (from -012 eV to -0.97 eV) in adsorption energy. A charge transfer from the N 2p orbital of NH3 to the V 3d orbital of VSe2 has been observed to cause appreciable NH3 detection by VSe2. In addition to that, the stability of the best-defected system has been confirmed through molecular dynamics simulation, and the possibility of repeated usability has been analyzed for calculating recovery time. Our theoretical results clearly indicate that Se-vacant layered VSe2 can be an efficient NH3 sensor if practically produced in the future. The presented results will thus potentially be useful for experimentalists in designing and developing VSe2-based NH3 sensors.


Assuntos
Amônia , Eletrônica , Teoria da Densidade Funcional , Adsorção , Emoções
6.
Chemosphere ; 321: 138105, 2023 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-36764614

RESUMO

Developing heterostructure photocatalysts for removing Microcystin-LR (MC-LR) under visible light was of positive significance to control the risk of Microcystins and ensure the safety of water quality. Herein, the Bi2WO6/Reduced graphene oxide (RGO) nanocomposites were prepared via a simple one-spot hydrothermal method for the first time to degrade MC-LR. The optimized Bi2WO6/RGO (Bi2WO6/RGO3%) achieved a removal efficiency of 82.3% toward MC-LR, with 1.9-fold higher efficiencies than Bi2WO6, and it showed superior reusability and high stability after 5 cycles. The degradation efficiency of MC-LR demonstrated a negative trend with the initial concentration of MC-LR, fulvic acid, and initial algal density increased, while MC-LR removal rate for the presence of anions was in the order of Cl- > CO3-2 > NO3- > H2PO4-. The degradation efficiency of MC-LR could reach up to 82.3% within 180 min in the neutral condition. The active species detection experiments and EPR measurements demonstrated that the holes (h+), hydroxide radicals (∙OH), and superoxide radicals (∙O2-) participated in the degradation of MC-LR. The DFT calculations showed that 0.56 of electron transferred from Bi2WO6 to RGO, indicating RGO introduction could prevent the recombination of photoelectrons and holes and was beneficial for MC-LR degradation. Finally, the possible intermediate products and degradation pathways were also proposed by the LC-MS/MS analysis.


Assuntos
Microcistinas , Espectrometria de Massas em Tandem , Microcistinas/química , Teoria da Densidade Funcional , Cromatografia Líquida , Luz
7.
Inorg Chem ; 62(6): 2561-2575, 2023 Feb 13.
Artigo em Inglês | MEDLINE | ID: mdl-36721875

RESUMO

Class Id ribonucleotide reductase (RNR) is a newly discovered enzyme, which employs the dimanganese cofactor in the superoxidized state (MnIII/MnIV) as the radical initiator. The dimanganese cofactor of class Id RNR in the reduced state (inactive) is clearly based on the crystal structure of the Fj-ß subunit. However, the state of the dimanganese cofactor of class Id RNR in the oxidized state (active) is not known. The X-band EPR spectra have shown that the activated Fj-ß subunit exists in two distinct complexes, 1 and 2. In this work, quantum mechanical/molecular mechanical calculations were carried out to study class Id RNR. First, we have determined that complex 2 contains a MnIII-(µ-oxo)2-MnIV cluster, and complex 1 contains a MnIII-(µ-hydroxo/µ-oxo)-MnIV cluster. Then, based on the determined dimanganese cofactors, the mechanism of radical initiation and transfer in class Id RNR is revealed. The MnIII-(µ-oxo)2-MnIV cluster in complex 2 has not enough reduction potential to initiate radical transfer directly. Instead, it needs to be monoprotonated into MnIII-(µ-hydroxo/µ-oxo)-MnIV (complex 1) before the radical transfer. The protonation state of µ-oxo can be regulated by changing the protein microenvironment, which is induced by the protein aggregation and separation of ß subunits with α subunits. The radical transfer between the cluster of MnIII-(µ-hydroxo/µ-oxo)-MnIV and Trp30 in the radical-transfer chain of the Fj-ß subunit (MnIII/MnIV ↔ His100 ↔ Asp194 ↔ Trp30 ↔ Arg99) is a water-mediated tri-proton-coupled electron transfer, which transfers proton from the ε-amino group of Lys71 to the carboxyl group of Glu97 via the water molecule Wat551 and the bridging µ-hydroxo ligand through a three-step reaction. This newly discovered proton-coupled electron-transfer mechanism in class Id RNR is different from those reported in the known Ia-Ic RNRs. The ε-amino group of Lys71, which serves as a proton donor, plays an important role in the radical transfer.


Assuntos
Ribonucleotídeo Redutases , Ribonucleotídeo Redutases/metabolismo , Prótons , Teoria da Densidade Funcional , Transporte de Elétrons
8.
Chemosphere ; 320: 138060, 2023 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-36754300

RESUMO

Broflanilide, as a novel meta-diamide insecticide, presents high bioactivity against agricultural pests. However, there was limited report regarding the photolysis fate of broflanilide. In this study, the photodegradation kinetics and influence factors of broflanilide, including different solvents, pH, iron, S2O82- and SO32- were investigated under UV condition, and the reaction mechanism and transformation pathway were explored. The reaction rates (k) showed solvent-specificity in ultrapure water (0.015 min-1), ethyl acetate (0.051 min-1), methanol (0.084 min-1) and acetonitrile (0.193 min-1), correspondingly. The photolysis of broflanilide was slowest in the acid condition (pH = 4.0) compared with that in the neutral (pH = 7.0) and alkaline (pH = 9.0) conditions. The iron (Fe2+ and Fe3+) presented significant inhibition on the photodegradation due to the light shielding effect. Additionally, the UV/peroxydisulfate (S2O82-) and UV/sulfite (SO32-) technologies could effectively accelerate the photodegradation of broflanilide, which has the potential for rapid treatment of pesticides in the aqueous environment. Six transformation products (TPs) were detected in water, peroxydisulfate and sulfite solutions, and the possible transformation pathways, including dehalogenation, cyclization, N-dealkylation, oxidation, reduction and hydrolysis, were proposed. Importantly, the reaction mechanism was explained through the analysis of molecular electrostatic potential and molecular orbitals. The predicted toxicity of the TPs indicated that several highly toxic TPs need to pay more attention in future risk assessments. This study provides a new perspective for evaluating the ecological fate and risks of pesticides.


Assuntos
Inseticidas , Poluentes Químicos da Água , Inseticidas/química , Fotólise , Diamida , Cinética , Teoria da Densidade Funcional , Água/química , Ferro , Poluentes Químicos da Água/análise
9.
Nat Commun ; 14(1): 1089, 2023 02 25.
Artigo em Inglês | MEDLINE | ID: mdl-36841818

RESUMO

Ecology lacks a holistic approach that can model phenomena across temporal and spatial scales, largely because of the challenges in modelling systems with a large number of interacting constituents. This hampers our understanding of complex ecosystems and the impact that human interventions (e.g., deforestation, wildlife harvesting and climate change) have on them. Here we use density functional theory, a computational method for many-body problems in physics, to develop a computational framework for ecosystem modelling. Our methods accurately fit experimental and synthetic data of interacting multi-species communities across spatial scales and can project to unseen data. As the key concept we establish and validate a cost function that encodes the trade-offs between the various ecosystem components. We show how this single general modelling framework delivers predictions on par with established, but specialised, approaches for systems from predatory microbes to territorial flies to tropical tree communities. Our density functional framework thus provides a promising avenue for advancing our understanding of ecological systems.


Assuntos
Ecologia , Ecossistema , Animais , Humanos , Teoria da Densidade Funcional , Árvores , Animais Selvagens
10.
Biophys Chem ; 294: 106958, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36682087

RESUMO

Gentamicin is used to treat brucellosis, an infectious disease caused by the Brucella species but the drug faces several issues such as low efficacy, instability, low solubility, and toxicity. It also has a very short half-life, therefore, requiring frequent dosing. Consequently, several other antibiotics are also being used for the treatment of brucellosis as a single dose as well as in combination with other antibiotics but none of these therapies are satisfactory. Nanoparticles in particular polymer-based ones utilizing polymers that are biodegradable and biocompatible for instance PLGA are a method of choice to overcome such drug delivery issues and enable potential targeted delivery. The current study focuses on the evaluation of the structural and dynamical properties of a drug-polymer system consisting of gentamicin drug and PLGA polymer nanoparticles in the water representing a targeted drug delivery system for the treatment of brucellosis. For this purpose, all-atom molecular dynamics simulations were carried out on the drug-polymer systems in the absence and presence of the surfactant bis(2-Ethylhexyl) sulfosuccinate (AOT) to determine the structural and dynamical properties as well as the effect of the surfactant on these properties. We also investigated systems in which the polymer constituents were in the form of monomeric units toward decoupling the primary interactions of the monomer units and polymer effects. The simulation results explain the nature of the interactions between the drug and the polymer as well as transport properties in terms of drug diffusion coefficients, which characterize the molecular behavior of gentamicin-polymer nanoparticles for use in brucellosis.


Assuntos
Brucelose , Nanopartículas , Humanos , Gentamicinas/química , Gentamicinas/uso terapêutico , Copolímero de Ácido Poliláctico e Ácido Poliglicólico/uso terapêutico , Ácido Poliglicólico/química , Ácido Poliglicólico/uso terapêutico , Simulação de Dinâmica Molecular , Teoria da Densidade Funcional , Ácido Láctico/química , Ácido Láctico/uso terapêutico , Antibacterianos/química , Sistemas de Liberação de Medicamentos , Brucelose/tratamento farmacológico , Glicolatos/uso terapêutico , Tensoativos
11.
J Chem Inf Model ; 63(3): 711-717, 2023 02 13.
Artigo em Inglês | MEDLINE | ID: mdl-36720086

RESUMO

We have ported and optimized the graphics processing unit (GPU)-accelerated QUICK and AMBER-based ab initio quantum mechanics/molecular mechanics (QM/MM) implementation on AMD GPUs. This encompasses the entire Fock matrix build and force calculation in QUICK including one-electron integrals, two-electron repulsion integrals, exchange-correlation quadrature, and linear algebra operations. General performance improvements to the QUICK GPU code are also presented. Benchmarks carried out on NVIDIA V100 and AMD MI100 cards display similar performance on both hardware for standalone HF/DFT calculations with QUICK and QM/MM molecular dynamics simulations with QUICK/AMBER. Furthermore, with respect to the QUICK/AMBER release version 21, significant speedups are observed for QM/MM molecular dynamics simulations. This significantly increases the range of scientific problems that can be addressed with open-source QM/MM software on state-of-the-art computer hardware.


Assuntos
Simulação de Dinâmica Molecular , Software , Computadores , Teoria Quântica , Teoria da Densidade Funcional
12.
Chemosphere ; 317: 137883, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-36693481

RESUMO

Quinones are potential pollutants and redox active compounds widely distributed in environmental media. In this study, methyl-p-benzoquinone (MBQ) was introduced into Fe(III)/peroxydisulfate system (Fe(III)/PDS) to expedite the conversion of Fe(III) to Fe(II) and the degradation of atrazine (ATZ), ultimately establishing an environmentally friendly system of "treating pollution with pollution". MBQ/Fe(III)/PDS system showed superior performance to traditional Fe(II)/PDS system in pH range of 2-7. Sulfate radical (SO4•-) and hydroxyl radical (•OH) were confirmed to exist in MBQ/Fe(III)/PDS system according to alcohol quenching experiments and ESR tests. Meanwhile, stable 80% of η[PMSO2] (i.e., the molar ratio of PMSO2 generation to PMSO consumption) was achieved and manifested that highly reactive substance Fe(IV) also participated in MBQ/Fe(III)/PDS system. The spontaneous transformation of MBQ and methyl-hydroquinone (MHQ) drove Fe(III)/Fe(II) cycle, during which MHQ induced Fe(III) reduction and Fe(II) regeneration. Transformation pathways of ATZ were proposed based on HPLC-MS detection and DFT calculation and ATZ degradation could be initiated by lateral chain oxidation and dechlorination-hydroxylation. The acute toxicity, bioaccumulation factor, developmental toxicity and mutagenicity of ATZ and its degradation intermediates were evaluated by Toxicity Estimation Software Tool, and the luminescent bacteria test was conducted to investigate the acute toxicity variation of the reaction solution. Cl- obviously inhibited ATZ degradation and three main by-products generation, while humic acid (HA) had little effect on them probably due to the established balance between inhibition (some components in HA competed to consume reactive species) and acceleration (quinone units in HA also facilitated Fe(III)/Fe(II) cycle).


Assuntos
Atrazina , Poluentes Químicos da Água , Atrazina/química , Compostos Férricos , Quinonas , Teoria da Densidade Funcional , Oxirredução , Compostos Ferrosos , Poluentes Químicos da Água/análise
13.
Inorg Chem ; 62(5): 2040-2048, 2023 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-36695190

RESUMO

The high-potential iron-sulfur protein (HiPIP) is an electron-transporting protein that functions in the photosynthetic electron-transfer system and possesses a cubane-type [4Fe-4S] cluster in the active center. Characterization of the geometrical and electronic structures of the [4Fe-4S] cluster leads to an understanding of the functions in HiPIP, which are expected to be influenced by the environment surrounding the [4Fe-4S] cluster. This work characterized the geometrical and electronic structures of the [4Fe-4S] cluster in the reduced HiPIP and evaluated their effects on the protein environment using the density functional theory (DFT) approach. DFT calculations showed that the structural asymmetry and spin delocalization between iron atoms allowed for the acquisition of a unique stable geometrical and electronic structure in the open-shell singlet. In addition, the formation of an Fe-Fe bond accompanying the spin delocalization was found to depend on the interatomic distance. A comparison of the calculated stable structures with and without consideration of the amino acids around the [4Fe-4S] cluster demonstrated that the surrounding amino acids stabilized the unique geometrical and electronic structure of the [4Fe-4S] cluster in HiPIP.


Assuntos
Proteínas Ferro-Enxofre , Teoria da Densidade Funcional , Espectroscopia de Ressonância de Spin Eletrônica , Domínio Catalítico , Proteínas Ferro-Enxofre/química , Aminoácidos
14.
Dalton Trans ; 52(4): 971-976, 2023 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-36598410

RESUMO

Here, we report the synthesis and atomic structure of a Ag15Cu12(SR)18(CH3COO)3·(C6H14) nanocluster (Ag15Cu12 for short, SR denotes cyclohexanethiol), confirmed by single-crystal X-ray diffraction (SC-XRD), electrospray ionization mass spectrometry (ESI-MS), X-ray photoelectron spectroscopy (XPS) and thermogravimetric analysis (TGA). X-ray crystallographic analysis revealed that Ag15Cu12 consisted of an irregular Ag12 core, stabilized by the Ag3Cu12(SR)18(CH3COO)3 shell. The shell consisted of two nearly planar Cu3(SR)6 moieties, three monomeric [-SR-Ag-SR-] units and three Cu2(CH3COO) staples. Furthermore, time-dependent density functional theory (TD-DFT) simulation was performed to interpret the optical absorption features of Ag15Cu12. Overall, this work will broaden and deepen the understanding of Ag-Cu alloy nanoclusters.


Assuntos
Ligas , Espectrometria de Massas por Ionização por Electrospray , Cristalografia por Raios X , Teoria da Densidade Funcional , Espectroscopia Fotoeletrônica
15.
Inorg Chem ; 62(3): 1095-1101, 2023 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-36617725

RESUMO

The reactivities of o-carborane-fused silylenes toward molecules with C≡E (E = C, P) bonds are reported. The reactions of bis(silylene) [(LSi:)C]2B10H10 (1a, L = PhC(NtBu)2) with arylalkynes afforded bis(silylium) carborane adducts 2 and 3, showing a Si(µ-C2)Si structure with an open-cage nido-carborane backbone. In contrast, the reaction of 1a with a phosphaalkyne AdC≡P (Ad = 1-adamantyl) smoothly furnished compound 4, comprising fused CPSi rings with a C=Si double bond and Si-Si single bond, and the related formation mechanism was investigated by DFT calculations. Furthermore, when monosilylene [(LSi:)C]CHB10H10 (1b) was employed to react with AdC≡P, compound 5 was isolated. The structure of 5 features a 1,2,3-triphosphetene core. All products were characterized by NMR spectroscopy and/or X-ray crystallography.


Assuntos
Cristalografia por Raios X , Teoria da Densidade Funcional
16.
Inorg Chem ; 62(3): 1122-1134, 2023 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-36630685

RESUMO

Herein, we report the synthesis, molecular structure, and optical features of tetrarylaminoboranes 1 (Mes2B-N(Ph)(C10H7)) and 2 (Mes2B-N(Ph)(C14H9)). In the solution state, 1 shows aggregation-induced emission enhancement and color switching, while 2 displays emission color switching and aggregation-caused quenching. At 77 K, frozen solutions of 1 show delayed fluorescence (DF) and phosphorescence, whereas 2 display only DF. Pristine solids of 1 and 2 showed delayed fluorescence under ambient conditions; however, crystals of both compounds show no phosphorescence under similar conditions. Polymethyl methacrylate thin films of 1 (1 wt % doping concentration) exhibit persistent room-temperature phosphorescence (pRTP) lasting for ∼0.5 s. In contrast, 2 does not show phosphorescence under similar conditions. Systematic photophysical studies and theoretical (DFT and TD-DFT) calculations are performed on these molecules to rationalize their intriguing optical characteristics.


Assuntos
Luminescência , Temperatura , Fluorescência , Teoria da Densidade Funcional
17.
J Chem Phys ; 158(2): 024108, 2023 Jan 14.
Artigo em Inglês | MEDLINE | ID: mdl-36641386

RESUMO

The random phase approximation of time-dependent auxiliary density functional theory (TDADFT) is rederived from auxiliary density perturbation theory. Our exhaustive validation of TDADFT reveals an upshift of the excitation energies by ∼0.1 eV with respect to standard time-dependent density functional theory. For the computationally efficient implementation of TDADFT, floating point operation optimized three-center electron repulsion integral recurrence relations and their double asymptotic expansions are implemented into the Davidson solver. The computational efficiency of TDADFT is benchmarked with four sets of molecules comprising alkanes, fullerenes, DNA fragments, and zeolites. The results show that TDADFT has a computational scaling between 1.3 and 1.9 with respect to the number of basis functions, which is lower than the scaling of standard time-dependent density functional theory. Due to its computational simplifications, TDADFT is particularly well suited for Born-Oppenheimer molecular dynamics simulations. As illustrative examples, we present the temperature effects on the gas-phase absorption spectra of benzene, naphthalene, and anthracene.


Assuntos
Simulação de Dinâmica Molecular , Teoria Quântica , Teoria da Densidade Funcional , Elétrons , Alcanos
18.
Phys Chem Chem Phys ; 25(3): 2595-2605, 2023 Jan 18.
Artigo em Inglês | MEDLINE | ID: mdl-36602177

RESUMO

The impact of external fields on the molecular structure and reactivity properties has been of considerable interest in the recent literature. Benzoic acid as one of the most widely used compounds in medicinal and materials sciences is known for its dual propensity in aromaticity and acidity. In this work, we systematically investigate the impact of a uniform external electric field on these properties. We apply density functional theory, conceptual density functional theory, and an information-theoretic approach to appreciate the change pattern of aromaticity and acidity properties in external fields with different strengths. Our results show that they possess different change patterns under external fields, which can be satisfactorily rationalized by variations in reactivity descriptors and partial charges. The surprising yet novel results from this study should enrich the body of our knowledge about the impact of external fields for different kinds of electronic properties and provide guidance and foundation for future studies of this phenomenon in other molecular systems.


Assuntos
Ácido Benzoico , Eletricidade , Teoria da Densidade Funcional , Estrutura Molecular
19.
J Phys Chem Lett ; 14(2): 559-566, 2023 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-36630724

RESUMO

We have performed the first DFT-based ab initio MD simulations of a hydrated electron (eaq-) in the presence of Na+, a system chosen because ion-pairing behavior in water depends sensitively on the local hydration structure. Experiments show that eaq-'s interact weakly with Na+; the eaq-'s spectrum blue shifts by only a few tens of meV upon ion pairing without changing shape. We find that the spectrum of the DFT-simulated eaq- red shifts and changes shape upon interaction with Na+, in contrast with experiment. We show that this is because the hydration structure of the DFT-simulated eaq- is too ordered or kosmotropic. Conversely, simulations that produce eaq-'s with a less ordered or chaotropic hydration structure form weaker ion pairs with Na+, yielding predicted spectral blue shifts in better agreement with experiment. Thus, ab initio simulations based on hybrid GGA DFT functionals fail to produce the correct solvation structure for the hydrated electron.


Assuntos
Elétrons , Água , Teoria da Densidade Funcional , Cátions , Água/química
20.
Int J Mol Sci ; 24(2)2023 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-36674803

RESUMO

Nitrile imine cycloaddition to hydantoins containing an exocyclic C=C double bond has been previously described in a very limited number of examples. In this work, regioselective synthesis of spiro-pyrazoline-imidazolidine-2,4-diones based on a 1,3-dipolar cycloaddition reaction of nitrile imines to 5-methylidene-3-phenyl-hydantoin have been proposed. It was found that, regardless of the nature of the aryl substituents at the terminal C and N atoms of the C-N-N fragment of nitrile imine (electron donor or electron acceptor), cycloaddition to the 5-methylidenhydantoin exocyclic C=C bond proceeds regioselectively, and the terminal nitrogen atom of the nitrile imine connects to the more sterically hindered carbon atom of the double bond, which leads to the formation of a 5-disubstituted pyrazoline ring. The observed cycloaddition regioselectivity was rationalized using DFT calculations of frontier molecular orbital interactions, global CDFT reactivity indices, and minimum energy paths.


Assuntos
Hidantoínas , Reação de Cicloadição , Teoria da Densidade Funcional , Iminas/química , Nitrilas/química , Anticonvulsivantes
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