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1.
Biomolecules ; 14(1)2023 12 28.
Artigo em Inglês | MEDLINE | ID: mdl-38254641

RESUMO

BACKGROUND: Exosomes are essential for hepatocellular carcinoma (HCC) progression and have garnered significant interest as novel targets for diagnostic, prognostic, and therapeutic approaches. This study aims to identify potential exosome-related biomarkers for the development of useful strategies for HCC diagnosis and therapy. METHODS: Three datasets obtained from the Gene Expression Omnibus (GEO) were utilized to identify differentially expressed genes (DEGs) in HCC. Through Gene Ontology (GO) analysis and protein-protein interaction (PPI) network, overall survival (OS) analysis, Cox analyses, and diethylnitrosamine (DEN)-induced HCC mouse model detection, exosome-related hub gene was screened out, followed by a prognostic value assessment and immune-correlates analysis based on the Cancer Genome Atlas (TCGA) dataset. The hub gene-containing exosomes derived from Hepa1-6 cells were isolated and characterized using differential ultracentrifugation, transmission electron microscopy scanning, and Western blot. Ultrasound-guided intrahepatic injection, cell co-culture, CCK-8, and flow cytometry were performed to investigate the effects of the hub gene on macrophage infiltration and polarization in HCC. RESULTS: A total of 83 DEGs enriched in the extracellular exosome term, among which, FTCD, HRA, and C8B showed the strongest association with the progression of HCC. FTCD was independently associated with a protective effect in HCC and selected as the hub gene. The presence of FTCD in exosomes was confirmed. FTCD-stimulated macrophages were polarized towards the M1 type and suppressed HCC cells proliferation. CONCLUSIONS: FTCD is a potential exosome-related biomarker for HCC diagnosis, prognosis, and treatment. The crosstalk between FTCD-containing exosomes and macrophages in HCC progression deserves further investigation.


Assuntos
Carcinoma Hepatocelular , Exossomos , Glutamato Formimidoiltransferase , Neoplasias Hepáticas , Animais , Camundongos , Western Blotting , Carcinoma Hepatocelular/genética , Exossomos/genética , Neoplasias Hepáticas/genética , Camundongos Endogâmicos , Glutamato Formimidoiltransferase/metabolismo
2.
PeerJ ; 10: e13629, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35818359

RESUMO

Micronutrients, including vitamins, minerals, and other bioactive compounds, have tremendous impacts on human health. Much progress has been made in improving the micronutrient content of inbred lines in various crops through biofortified breeding. However, biofortified breeding still falls short for the rapid generation of high-yielding hybrids rich in multiple micronutrients. Here, we bred multi-biofortified sweet corn hybrids efficiently through marker-assisted selection. Screening by molecular markers for vitamin E and folic acid, we obtained 15 inbred lines carrying favorable alleles (six for vitamin E, nine for folic acid, and three for both). Multiple biofortified corn hybrids were developed through crossing and genetic diversity analysis.


Assuntos
Biofortificação , Alimentos Fortificados , Glutamato Formimidoiltransferase , Micronutrientes , Biofortificação/métodos , Ácido Fólico , Glutamato Formimidoiltransferase/genética , Micronutrientes/genética , Melhoramento Vegetal/métodos , Verduras/genética , Vitamina E , Zea mays/genética
3.
PLoS Genet ; 17(12): e1009980, 2021 12.
Artigo em Inglês | MEDLINE | ID: mdl-34941873

RESUMO

The liver is a crucial center in the regulation of energy homeostasis under starvation. Although downregulation of mammalian target of rapamycin complex 1 (mTORC1) has been reported to play pivotal roles in the starvation responses, the underpinning mechanisms in particular upstream factors that downregulate mTORC1 remain largely unknown. To identify genetic variants that cause liver energy disorders during starvation, we conduct a zebrafish forward genetic screen. We identify a liver hulk (lvh) mutant with normal liver under feeding, but exhibiting liver hypertrophy under fasting. The hepatomegaly in lvh is caused by enlarged hepatocyte size and leads to liver dysfunction as well as limited tolerance to starvation. Positional cloning reveals that lvh phenotypes are caused by mutation in the ftcd gene, which encodes the formimidoyltransferase cyclodeaminase (FTCD). Further studies show that in response to starvation, the phosphorylated ribosomal S6 protein (p-RS6), a downstream effector of mTORC1, becomes downregulated in the wild-type liver, but remains at high level in lvh. Inhibition of mTORC1 by rapamycin rescues the hepatomegaly and liver dysfunction of lvh. Thus, we characterize the roles of FTCD in starvation response, which acts as an important upstream factor to downregulate mTORC1, thus preventing liver hypertrophy and dysfunction.


Assuntos
Amônia-Liases/genética , Glutamato Formimidoiltransferase/genética , Hepatomegalia/genética , Fígado/metabolismo , Enzimas Multifuncionais/genética , Proteína S6 Ribossômica/genética , Animais , Modelos Animais de Doenças , Hepatócitos/metabolismo , Hepatócitos/patologia , Hepatomegalia/metabolismo , Hepatomegalia/patologia , Humanos , Fígado/patologia , Alvo Mecanístico do Complexo 1 de Rapamicina/genética , Complexos Multiproteicos/genética , Mutação/genética , Fosforilação , Transdução de Sinais/genética , Inanição/genética , Inanição/metabolismo , Inanição/patologia , Peixe-Zebra/genética
5.
EMBO J ; 40(9): e105853, 2021 05 03.
Artigo em Inglês | MEDLINE | ID: mdl-33555040

RESUMO

p97ATPase-mediated membrane fusion is required for the biogenesis of the Golgi complex. p97 and its cofactor p47 function in soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein receptor (SNARE) priming, but the tethering complex for p97/p47-mediated membrane fusion remains unknown. In this study, we identified formiminotransferase cyclodeaminase (FTCD) as a novel p47-binding protein. FTCD mainly localizes to the Golgi complex and binds to either p47 or p97 via its association with their polyglutamate motifs. FTCD functions in p97/p47-mediated Golgi reassembly at mitosis in vivo and in vitro via its binding to p47 and to p97. We also showed that FTCD, p47, and p97 form a big FTCD-p97/p47-FTCD tethering complex. In vivo tethering assay revealed that FTCD that was designed to localize to mitochondria caused mitochondria aggregation at mitosis by forming a complex with endogenous p97 and p47, which support a role for FTCD in tethering biological membranes in cooperation with the p97/p47 complex. Therefore, FTCD is thought to act as a tethering factor by forming the FTCD-p97/p47-FTCD complex in p97/p47-mediated Golgi membrane fusion.


Assuntos
Amônia-Liases/metabolismo , Glutamato Formimidoiltransferase/metabolismo , Complexo de Golgi/metabolismo , Enzimas Multifuncionais/metabolismo , Proteínas de Ligação a Fator Solúvel Sensível a N-Etilmaleimida/metabolismo , Proteína com Valosina/metabolismo , Amônia-Liases/química , Sítios de Ligação , Glutamato Formimidoiltransferase/química , Células HeLa , Células Hep G2 , Humanos , Fusão de Membrana , Mitocôndrias , Mitose , Enzimas Multifuncionais/química , Complexos Multiproteicos/metabolismo , Ligação Proteica
6.
Front Immunol ; 11: 575572, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-33117375

RESUMO

Autoimmune hepatitis (AIH) is a severe and chronic liver disease, and its incidence has increased worldwide in recent years. Research into the pathogenesis of AIH remains limited largely owing to the lack of suitable mouse models. The concanavalin A (ConA) mouse model is a typical and well-established model used to investigate T cell-dependent liver injury. However, ConA-induced hepatitis is acute and usually disappears after 48 h; thus, it does not mimic the pathogenesis of AIH in the human body. Several studies have explored various AIH mouse models, but as yet there is no widely accepted and valid mouse model for AIH. Immunosuppression is the standard clinical therapy for AIH, but patient side effects and recurrence limit its use. Regulatory T cells (Tregs) play critical roles in the maintenance of immune homeostasis and in the prevention of autoimmune diseases, which may provide a potential therapeutic target for AIH therapy. However, the role of Tregs in AIH has not yet been clarified, partly because of difficulties in diagnosing AIH and in collecting patient samples. In this review, we discuss the studies related to Treg in various AIH mouse models and patients with AIH and provide some novel insights for this research area.


Assuntos
Doença Hepática Induzida por Substâncias e Drogas/imunologia , Hepatite Autoimune/imunologia , Fígado/imunologia , Linfócitos T Reguladores/imunologia , Transferência Adotiva , Amônia-Liases/imunologia , Animais , Autoanticorpos/imunologia , Doença Hepática Induzida por Substâncias e Drogas/etiologia , Doença Hepática Induzida por Substâncias e Drogas/metabolismo , Doença Hepática Induzida por Substâncias e Drogas/terapia , Concanavalina A , Citocromo P-450 CYP2D6/imunologia , Modelos Animais de Doenças , Glutamato Formimidoiltransferase/imunologia , Hepatite Autoimune/etiologia , Hepatite Autoimune/metabolismo , Hepatite Autoimune/terapia , Humanos , Imunossupressores/uso terapêutico , Fígado/metabolismo , Fígado/patologia , Camundongos , Enzimas Multifuncionais/imunologia , Linfócitos T Reguladores/metabolismo , Linfócitos T Reguladores/transplante
7.
Biomed Res Int ; 2019: 1742341, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31886176

RESUMO

Accumulating statistics have shown that liver cancer causes the second highest mortality rate of cancer-related deaths worldwide, of which 80% is hepatocellular carcinoma (HCC). Given the underlying molecular mechanism of HCC pathology is not fully understood yet, identification of reliable predictive biomarkers is more applicable to improve patients' outcomes. The results of principal component analysis (PCA) showed that the grouped data from 1557 samples in Gene Expression Omnibus (GEO) came from different populations, and the mean tumor purity of tumor tissues was 0.765 through the estimate package in R software. After integrating the differentially expressed genes (DEGs), we finally got 266 genes. Then, the protein-protein interaction (PPI) network was established based on these DEGs, which contained 240 nodes and 1747 edges. FOXM1 was the core gene in module 1 and highly associated with FOXM1 transcription factor network pathway, while FTCD was the core gene in module 2 and was enriched in the metabolism of amino acids and derivatives. The expression levels of hub genes were in line with The Cancer Genome Atlas (TCGA) database. Meanwhile, there were certain correlations among the top ten genes in the up- and downregulated DEGs. Finally, Kaplan-Meier curves and receiver operating characteristic (ROC) curves were plotted for the top five genes in PPI. Apart from CDKN3, the others were closely concerned with overall survival. In this study, we detected the potential biomarkers and their involved biological processes, which would provide a new train of thought for clinical diagnosis and treatment.


Assuntos
Biomarcadores Tumorais/genética , Carcinoma Hepatocelular/genética , Neoplasias Hepáticas/genética , Transcriptoma/genética , Amônia-Liases/genética , Carcinoma Hepatocelular/patologia , Proteínas Cdc20/genética , Biologia Computacional , Ciclina A2/genética , Proteínas Inibidoras de Quinase Dependente de Ciclina/genética , Intervalo Livre de Doença , Fosfatases de Especificidade Dupla/genética , Proteína Forkhead Box M1/genética , Perfilação da Expressão Gênica , Regulação Neoplásica da Expressão Gênica , Glutamato Formimidoiltransferase/genética , Humanos , Estimativa de Kaplan-Meier , Neoplasias Hepáticas/patologia , Enzimas Multifuncionais/genética , Prognóstico , Mapas de Interação de Proteínas/genética , Software
8.
Med Sci Monit ; 25: 4474-4484, 2019 Jun 16.
Artigo em Inglês | MEDLINE | ID: mdl-31203308

RESUMO

BACKGROUND Formiminotransferase cyclodeaminase (FTCD) is a candidate tumor suppressor gene in hepatocellular carcinoma (HCC). However, the mechanism for reduced expression of FTCD and its functional role in HCC remains unclear. In this study, we explored the biological functions of FTCD in HCC. MATERIAL AND METHODS The expression and clinical correlation of FTCD in HCC tissue were analyzed using TCGA (The Cancer Genome Atlas) and a cohort of 60 HCC patients. The MEXPRESS platform was accessed to identify the methylation level in promoter region FTCD. CCK-8 assay and flow cytometry analysis were used to explore the proliferation, cell apoptosis proportion, and DNA damage in HCC cells with FTCD overexpression. Western blot analysis was performed to identify the downstream target of FTCD. RESULTS FTCD is significantly downregulated in HCC tissues and cell lines. Low FTCD expression is correlated with a poor prognosis (P<0.001) and an aggressive tumor phenotype, including AFP levels (P=0.009), tumor size (P=0.013), vascular invasion (P=0.001), BCLC stage (P=0.024), and pTNM stage (P<0.001). Bioinformatics analysis indicated promoter hypermethylation can result in decreased expression of FTCD. FTCD overexpression suppressed cell proliferation by promoting DNA damage and inducing cell apoptosis in HCC cells. FTCD overexpression resulted in increased level of PTEN protein, but a decrease in PI3K, total Akt, and phosphorylated Akt protein in HCC cells, suggesting involvement of the PI3K/Akt pathway. CONCLUSIONS FTCD acts as a tumor suppressor gene in HCC pathogenesis and progression and is a candidate prognostic marker and a possible therapeutic target for this disease.


Assuntos
Amônia-Liases/metabolismo , Carcinoma Hepatocelular/metabolismo , Glutamato Formimidoiltransferase/metabolismo , Enzimas Multifuncionais/metabolismo , Idoso , Amônia-Liases/fisiologia , Apoptose/fisiologia , Carcinoma Hepatocelular/patologia , Linhagem Celular Tumoral , Movimento Celular/genética , Proliferação de Células/genética , China , Dano ao DNA/fisiologia , Feminino , Regulação Neoplásica da Expressão Gênica/genética , Glutamato Formimidoiltransferase/fisiologia , Células Hep G2 , Humanos , Neoplasias Hepáticas/metabolismo , Neoplasias Hepáticas/patologia , Masculino , Pessoa de Meia-Idade , Enzimas Multifuncionais/fisiologia , Fosfatidilinositol 3-Quinases/metabolismo , Regiões Promotoras Genéticas/genética , Proteínas Proto-Oncogênicas c-akt/metabolismo , Transdução de Sinais/fisiologia
9.
Int J Epidemiol ; 48(3): 876-886, 2019 06 01.
Artigo em Inglês | MEDLINE | ID: mdl-30929011

RESUMO

BACKGROUND: Hypertension and diabetes have been associated with inefficient arsenic metabolism, primarily through studies undertaken in populations exposed through drinking water. Recently, rice has been recognized as a source of arsenic exposure, but it remains unclear whether populations with high rice consumption but no known water exposure are at risk for the health problems associated with inefficient arsenic metabolism. METHODS: The relationships between arsenic metabolism efficiency (% inorganic arsenic, % monomethylarsenate and % dimethylarsinate in urine) and three hypertension- and seven diabetes-related traits were estimated among 12 609 participants of the Hispanic Community Health Study/Study of Latinos (HCHS/SOL). A two-sample Mendelian randomization approach incorporated genotype-arsenic metabolism relationships from literature, and genotype-trait relationships from HCHS/SOL, with a mixed-effect linear model. Analyses were stratified by rice consumption and smoking. RESULTS: Among never smokers with high rice consumption, each percentage point increase in was associated with increases of 1.96 mmHg systolic blood pressure (P = 0.034) and 1.85 mmHg inorganic arsenic diastolic blood pressure (P = 0.003). Monomethylarsenate was associated with increased systolic (1.64 mmHg/percentage point increase; P = 0.021) and diastolic (1.33 mmHg/percentage point increase; P = 0.005) blood pressure. Dimethylarsinate, a marker of efficient metabolism, was associated with lower systolic (-0.92 mmHg/percentage point increase; P = 0.025) and diastolic (-0.79 mmHg/percentage point increase; P = 0.004) blood pressure. Among low rice consumers and ever smokers, the results were consistent with no association. Evidence for a relationship with diabetes was equivocal. CONCLUSIONS: Less efficient arsenic metabolism was associated with increased blood pressure among never smokers with high rice consumption, suggesting that arsenic exposure through rice may contribute to high blood pressure in the Hispanic/Latino community.


Assuntos
Arsênio/metabolismo , Diabetes Mellitus Tipo 2/epidemiologia , Dieta/estatística & dados numéricos , Hipertensão/epidemiologia , Oryza , Adulto , Amônia-Liases/genética , Arsênio/urina , Arsenicais/urina , Pressão Sanguínea , Ácido Cacodílico/urina , Feminino , Contaminação de Alimentos , Glutamato Formimidoiltransferase/genética , Hispânico ou Latino , Humanos , Masculino , Análise da Randomização Mendeliana , Metiltransferases/genética , Pessoa de Meia-Idade , Enzimas Multifuncionais/genética , Oryza/química , Fatores de Risco , Fumar/epidemiologia
10.
PLoS Genet ; 15(3): e1007984, 2019 03.
Artigo em Inglês | MEDLINE | ID: mdl-30893314

RESUMO

Inorganic arsenic (iAs) is a carcinogen, and exposure to iAs via food and water is a global public health problem. iAs-contaminated drinking water alone affects >100 million people worldwide, including ~50 million in Bangladesh. Once absorbed into the blood stream, most iAs is converted to mono-methylated (MMA) and then di-methylated (DMA) forms, facilitating excretion in urine. Arsenic metabolism efficiency varies among individuals, in part due to genetic variation near AS3MT (arsenite methyltransferase; 10q24.32). To identify additional arsenic metabolism loci, we measured protein-coding variants across the human exome for 1,660 Bangladeshi individuals participating in the Health Effects of Arsenic Longitudinal Study (HEALS). Among the 19,992 coding variants analyzed exome-wide, the minor allele (A) of rs61735836 (p.Val101Met) in exon 3 of FTCD (formiminotransferase cyclodeaminase) was associated with increased urinary iAs% (P = 8x10-13), increased MMA% (P = 2x10-16) and decreased DMA% (P = 6x10-23). Among 2,401 individuals with arsenic-induced skin lesions (an indicator of arsenic toxicity and cancer risk) and 2,472 controls, carrying the low-efficiency A allele (frequency = 7%) was associated with increased skin lesion risk (odds ratio = 1.35; P = 1x10-5). rs61735836 is in weak linkage disequilibrium with all nearby variants. The high-efficiency/major allele (G/Valine) is human-specific and eliminates a start codon at the first 5´-proximal Kozak sequence in FTCD, suggesting selection against an alternative translation start site. FTCD is critical for catabolism of histidine, a process that generates one-carbon units that can enter the one-carbon/folate cycle, which provides methyl groups for arsenic metabolism. In our study population, FTCD and AS3MT SNPs together explain ~10% of the variation in DMA% and support a causal effect of arsenic metabolism efficiency on arsenic toxicity (i.e., skin lesions). In summary, this work identifies a coding variant in FTCD associated with arsenic metabolism efficiency, providing new evidence supporting the established link between one-carbon/folate metabolism and arsenic toxicity.


Assuntos
Amônia-Liases/genética , Arsênio/toxicidade , Glutamato Formimidoiltransferase/genética , Metiltransferases/genética , Adulto , Alelos , Amônia-Liases/fisiologia , Arsênio/metabolismo , Intoxicação por Arsênico , Bangladesh , Exposição Ambiental , Feminino , Ácido Fólico/metabolismo , Frequência do Gene/genética , Glutamato Formimidoiltransferase/fisiologia , Humanos , Masculino , Metilação , Metiltransferases/metabolismo , Enzimas Multifuncionais , Mutação de Sentido Incorreto , Razão de Chances , Fenótipo , Polimorfismo de Nucleotídeo Único/genética , Fatores de Risco , Dermatopatias/induzido quimicamente , Dermatopatias/genética , Poluentes Químicos da Água
11.
Nature ; 559(7715): 632-636, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29995852

RESUMO

The chemotherapeutic drug methotrexate inhibits the enzyme dihydrofolate reductase1, which generates tetrahydrofolate, an essential cofactor in nucleotide synthesis2. Depletion of tetrahydrofolate causes cell death by suppressing DNA and RNA production3. Although methotrexate is widely used as an anticancer agent and is the subject of over a thousand ongoing clinical trials4, its high toxicity often leads to the premature termination of its use, which reduces its potential efficacy5. To identify genes that modulate the response of cancer cells to methotrexate, we performed a CRISPR-Cas9-based screen6,7. This screen yielded FTCD, which encodes an enzyme-formimidoyltransferase cyclodeaminase-that is required for the catabolism of the amino acid histidine8, a process that has not previously been linked to methotrexate sensitivity. In cultured cancer cells, depletion of several genes in the histidine degradation pathway markedly decreased sensitivity to methotrexate. Mechanistically, histidine catabolism drains the cellular pool of tetrahydrofolate, which is particularly detrimental to methotrexate-treated cells. Moreover, expression of the rate-limiting enzyme in histidine catabolism is associated with methotrexate sensitivity in cancer cell lines and with survival rate in patients. In vivo dietary supplementation of histidine increased flux through the histidine degradation pathway and enhanced the sensitivity of leukaemia xenografts to methotrexate. The histidine degradation pathway markedly influences the sensitivity of cancer cells to methotrexate and may be exploited to improve methotrexate efficacy through a simple dietary intervention.


Assuntos
Histidina/metabolismo , Metotrexato/farmacologia , Metotrexato/uso terapêutico , Neoplasias/tratamento farmacológico , Neoplasias/metabolismo , Amônia-Liases/deficiência , Amônia-Liases/genética , Amônia-Liases/metabolismo , Animais , Sistemas CRISPR-Cas/genética , Linhagem Celular Tumoral , Feminino , Antagonistas do Ácido Fólico/farmacologia , Antagonistas do Ácido Fólico/uso terapêutico , Glutamato Formimidoiltransferase/deficiência , Glutamato Formimidoiltransferase/genética , Glutamato Formimidoiltransferase/metabolismo , Histidina/farmacologia , Humanos , Masculino , Camundongos , Camundongos Endogâmicos NOD , Camundongos SCID , Enzimas Multifuncionais , Nucleotídeos/biossíntese , Proteína Carregadora de Folato Reduzido/genética , Proteína Carregadora de Folato Reduzido/metabolismo , Tetra-Hidrofolato Desidrogenase/metabolismo , Tetra-Hidrofolatos/deficiência , Tetra-Hidrofolatos/metabolismo , Ensaios Antitumorais Modelo de Xenoenxerto
12.
PLoS One ; 13(7): e0200423, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29995946

RESUMO

A comparative analysis of whole genome sequencing (WGS) and genotype calling was initiated for ten human genome samples sequenced by St. Petersburg State University Peterhof Sequencing Center and by three commercial sequencing centers outside of Russia. The sequence quality, efficiency of DNA variant and genotype calling were compared with each other and with DNA microarrays for each of ten study subjects. We assessed calling of SNPs, indels, copy number variation, and the speed of WGS throughput promised. Twenty separate QC analyses showed high similarities among the sequence quality and called genotypes. The ten genomes tested by the centers included eight American patients afflicted with autoimmune hepatitis (AIH), plus one case's unaffected parents, in a prelude to discovering genetic influences in this rare disease of unknown etiology. The detailed internal replication and parallel analyses allowed the observation of two of eight AIH cases carrying a rare allele genotype for a previously described AIH-associated gene (FTCD), plus multiple occurrences of known HLA-DRB1 alleles associated with AIH (HLA-DRB1-03:01:01, 13:01:01 and 7:01:01). We also list putative SNVs in other genes as suggestive in AIH influence.


Assuntos
Técnicas de Genotipagem , Hepatite Autoimune/genética , Sequenciamento Completo do Genoma , Adolescente , Amônia-Liases/genética , Criança , Pré-Escolar , Estudos de Coortes , Variações do Número de Cópias de DNA , Feminino , Predisposição Genética para Doença , Glutamato Formimidoiltransferase/genética , Cadeias HLA-DRB1/genética , Humanos , Mutação INDEL , Masculino , Enzimas Multifuncionais , Análise de Sequência com Séries de Oligonucleotídeos , Polimorfismo de Nucleotídeo Único , Controle de Qualidade , Federação Russa , Fatores de Tempo
13.
Neuropsychology ; 32(8): 973-984, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-29927301

RESUMO

OBJECTIVE: The central role of working memory in IQ and the high heritability of working memory performance motivated interest in identifying the specific genes underlying this heritability. The FTCD (formimidoyltransferase cyclodeaminase) gene was identified as a candidate gene for allelic association with working memory in part from genetic mapping studies of mouse Morris water maze performance. METHOD: The present study tested variants of this gene for effects on a delayed match-to-sample task of a large sample of younger and older participants. RESULTS: The rs914246 variant, but not the rs914245 variant, of the FTCD gene modulated accuracy in the task for younger, but not older, people under high working memory load. The interaction of haplotype × distance × load had a partial eta squared effect size of 0.015. Analysis of simple main effects had partial eta squared effect sizes ranging from 0.012 to 0.040. A reporter gene assay revealed that the C allele of the rs914246 genotype is functional and a main factor regulating FTCD gene expression. CONCLUSION: This study extends previous work on the genetics of working memory by revealing that a gene in the glutamatergic pathway modulates working memory in young people but not in older people. (PsycINFO Database Record (c) 2018 APA, all rights reserved).


Assuntos
Envelhecimento/psicologia , Amônia-Liases/genética , Glutamato Formimidoiltransferase/genética , Memória de Curto Prazo/fisiologia , Desempenho Psicomotor/fisiologia , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Feminino , Genes Reporter , Genótipo , Haplótipos , Humanos , Masculino , Pessoa de Meia-Idade , Enzimas Multifuncionais , Testes Neuropsicológicos , Polimorfismo de Nucleotídeo Único/genética , Adulto Jovem
14.
Mol Genet Genomic Med ; 5(6): 795-799, 2017 11.
Artigo em Inglês | MEDLINE | ID: mdl-29178637

RESUMO

BACKGROUND: Elevated plasma and urine formiminoglutamic acid (FIGLU) levels are commonly indicative of formiminoglutamic aciduria (OMIM #229100), a poorly understood autosomal recessive disorder of histidine and folate metabolism, resulting from formiminotransferase-cyclodeaminase (FTCD) deficiency, a bifunctional enzyme encoded by FTCD. METHODS: In order to further understanding about the molecular alterations that contribute to FIGLU-uria, we sequenced FTCD in 20 individuals with putative FTCD deficiency and varying laboratory findings, including increased FIGLU excretion. RESULTS: Individuals tested had biallelic loss-of-function variants in protein-coding regions of FTCD. The FTCD allelic spectrum comprised of 12 distinct variants including 5 missense alterations that replace conserved amino acid residues (c.223A>C, c.266A>G, c.319T>C, c.430G>A, c.514G>T), an in-frame deletion (c.1373_1375delTGG), with the remaining alterations predicted to affect mRNA processing/stability. These included two frameshift variants (c.990dup, c.1366dup) and four nonsense variants (c.337C>T, c.451A>T, c.763C>T, c.1607T>A). CONCLUSION: We observed additional FTCD alleles leading to urinary FIGLU elevations, and thus, providing molecular evidence of FTCD deficiency in cases identified by newborn screening or clinical biochemical genetic laboratory testing.


Assuntos
Amônia-Liases/genética , Glutamato Formimidoiltransferase/deficiência , Erros Inatos do Metabolismo/genética , Alelos , Sequência de Aminoácidos , Códon sem Sentido , Mutação da Fase de Leitura , Deleção de Genes , Genótipo , Glutamato Formimidoiltransferase/genética , Humanos , Erros Inatos do Metabolismo/diagnóstico , Mutação de Sentido Incorreto , Fases de Leitura Aberta/genética , Polimorfismo de Nucleotídeo Único
15.
Clin Exp Immunol ; 186(2): 164-176, 2016 11.
Artigo em Inglês | MEDLINE | ID: mdl-27414259

RESUMO

Autoimmune hepatitis (AIH) is a chronic liver disease characterized by progressive inflammation, female preponderance and seropositivity for autoantibodies such as anti-smooth muscle actin and/or anti-nuclear, anti-liver kidney microsomal type 1 (anti-LKM1) and anti-liver cytosol type 1 (anti-LC1) in more than 80% of cases. AIH is linked strongly to several major histocompatibility complex (MHC) alleles, including human leucocyte antigen (HLA)-DR3, -DR7 and -DR13. HLA-DR4 has the second strongest association with adult AIH, after HLA-DR3. We investigated the role of HLA-DR4 in the development of AIH by immunization of HLA-DR4 (DR4) transgenic non-obese diabetic (NOD) mice with DNA coding for human CYP2D6/FTCD fusion autoantigen. Immunization of DR4 mice leads to sustained mild liver injury, as assessed biochemically by elevated alanine aminotransferase, histologically by interface hepatitis, plasma cell infiltration and mild fibrosis and immunologically by the development of anti-LKM1/anti-LC1 antibodies. In addition, livers from DR4 mice had fewer regulatory T cells (Tregs ), which had decreased programmed death (PD)-1 expression. Splenic Tregs from these mice also showed impaired inhibitory capacity. Furthermore, DR4 expression enhanced the activation status of CD8+ T cells, macrophages and dendritic cells in naive DR4 mice compared to naive wild-type (WT) NOD mice. Our results demonstrate that HLA-DR4 is a susceptibility factor for the development of AIH. Impaired suppressive function of Tregs and reduced PD-1 expression may result in spontaneous activation of key immune cell subsets, such as antigen-presenting cells and CD8+ T effectors, facilitating the induction of AIH and persistent liver damage.


Assuntos
Antígeno HLA-DR4/genética , Antígeno HLA-DR4/imunologia , Hepatite Autoimune/etiologia , Hepatite Autoimune/patologia , Amônia-Liases , Animais , Células Apresentadoras de Antígenos/imunologia , Células Apresentadoras de Antígenos/metabolismo , Autoanticorpos/imunologia , Autoantígenos/imunologia , Linfócitos T CD8-Positivos/imunologia , Linfócitos T CD8-Positivos/metabolismo , Citocromo P-450 CYP2D6/genética , Citocromo P-450 CYP2D6/imunologia , Citocinas/metabolismo , Modelos Animais de Doenças , Glutamato Formimidoiltransferase , Humanos , Hipergamaglobulinemia/imunologia , Imunização , Imunoglobulina G/imunologia , Mediadores da Inflamação/metabolismo , Camundongos , Camundongos Endogâmicos NOD , Camundongos Transgênicos , Complexos Multienzimáticos/genética , Complexos Multienzimáticos/imunologia , Enzimas Multifuncionais , Plasmócitos/imunologia , Plasmócitos/metabolismo , Subpopulações de Linfócitos T/imunologia , Subpopulações de Linfócitos T/metabolismo
16.
Mol Cell Proteomics ; 14(5): 1400-10, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25724911

RESUMO

The data-independent acquisition (DIA) approach has recently been introduced as a novel mass spectrometric method that promises to combine the high content aspect of shotgun proteomics with the reproducibility and precision of selected reaction monitoring. Here, we evaluate, whether SWATH-MS type DIA effectively translates into a better protein profiling as compared with the established shotgun proteomics. We implemented a novel DIA method on the widely used Orbitrap platform and used retention-time-normalized (iRT) spectral libraries for targeted data extraction using Spectronaut. We call this combination hyper reaction monitoring (HRM). Using a controlled sample set, we show that HRM outperformed shotgun proteomics both in the number of consistently identified peptides across multiple measurements and quantification of differentially abundant proteins. The reproducibility of HRM in peptide detection was above 98%, resulting in quasi complete data sets compared with 49% of shotgun proteomics. Utilizing HRM, we profiled acetaminophen (APAP)(1)-treated three-dimensional human liver microtissues. An early onset of relevant proteome changes was revealed at subtoxic doses of APAP. Further, we detected and quantified for the first time human NAPQI-protein adducts that might be relevant for the toxicity of APAP. The adducts were identified on four mitochondrial oxidative stress related proteins (GATM, PARK7, PRDX6, and VDAC2) and two other proteins (ANXA2 and FTCD). Our findings imply that DIA should be the preferred method for quantitative protein profiling.


Assuntos
Acetaminofen/farmacologia , Analgésicos não Narcóticos/farmacologia , Hepatócitos/efeitos dos fármacos , Fígado/efeitos dos fármacos , Peptídeos/análise , Proteoma/análise , Amidinotransferases/análise , Amidinotransferases/genética , Amidinotransferases/metabolismo , Amônia-Liases/análise , Amônia-Liases/genética , Amônia-Liases/metabolismo , Anexina A2/análise , Anexina A2/genética , Anexina A2/metabolismo , Expressão Gênica , Glutamato Formimidoiltransferase/análise , Glutamato Formimidoiltransferase/genética , Glutamato Formimidoiltransferase/metabolismo , Hepatócitos/metabolismo , Humanos , Peptídeos e Proteínas de Sinalização Intracelular/análise , Peptídeos e Proteínas de Sinalização Intracelular/genética , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Fígado/metabolismo , Enzimas Multifuncionais , Proteínas Oncogênicas/análise , Proteínas Oncogênicas/genética , Proteínas Oncogênicas/metabolismo , Peroxirredoxina VI/análise , Peroxirredoxina VI/genética , Peroxirredoxina VI/metabolismo , Proteína Desglicase DJ-1 , Proteólise , Proteoma/genética , Proteoma/metabolismo , Proteômica/métodos , Técnicas de Cultura de Tecidos , Tripsina/química , Canal de Ânion 2 Dependente de Voltagem/análise , Canal de Ânion 2 Dependente de Voltagem/genética , Canal de Ânion 2 Dependente de Voltagem/metabolismo
17.
Cell Signal ; 26(7): 1560-6, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24686083

RESUMO

HIF-1α is implicated in hepatocellular carcinoma (HCC) pathologies. Here, we screened a human liver cDNA library for HIF-1α-interacting partners using a yeast two-hybrid system. We identified 53 genes, including formiminotransferase cyclodeaminase (FTCD), which was confirmed by co-immunoprecipitation. Moreover, our data indicated that HIF-1α mediated the effects of hypoxia on FTCD induction via binding to the hypoxia-responsive elements of the FTCD promoter. Knockdown of FTCD reduced the effects of HIF-1α in hypoxia and enhanced chemosensitivity in HepG2 cells. Our findings suggested crosstalk between FTCD and HIF signaling and promoted HCC progression, thus implicating FTCD as a therapeutic target for HCC.


Assuntos
Amônia-Liases/metabolismo , Carcinoma Hepatocelular/patologia , Glutamato Formimidoiltransferase/metabolismo , Subunidade alfa do Fator 1 Induzível por Hipóxia/genética , Neoplasias Hepáticas/patologia , Técnicas do Sistema de Duplo-Híbrido , Amônia-Liases/biossíntese , Hipóxia Celular/fisiologia , Linhagem Celular Tumoral , Proliferação de Células , Glutamato Formimidoiltransferase/biossíntese , Células Hep G2 , Humanos , Enzimas Multifuncionais , Invasividade Neoplásica/patologia , Regiões Promotoras Genéticas , Ligação Proteica , Interferência de RNA , RNA Interferente Pequeno , Elementos de Resposta/genética , Transdução de Sinais
18.
Hepatology ; 58(2): 718-28, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23475565

RESUMO

UNLABELLED: Autoimmune hepatitis (AIH) is defined as a chronic liver disease with loss of tolerance against liver tissue eventually leading to cirrhosis if left untreated. 80%-90% of patients can be treated with a life-long immunosuppression. Unfortunately, there are strong drug-related side effects and steroid-refractory patients. Therefore, there is a need for a model system to investigate the complex immunopathogenesis of this chronic disease and subsequently to develop new therapeutic interventions. We developed a new model of experimental murine AIH (emAIH) by a self-limited adenoviral infection with the hepatic autoantigen formiminotransferase cyclodeaminase (FTCD). After an initial transient hepatitis there was a chronic evolving AIH, finally leading to portal and lobular fibrosis. We could show that the genetic predisposition provided by the NOD background was essential for creating a fertile field for the development of liver-specific autoimmunity. However, a strong environmental trigger was additionally necessary to initiate the disease. Besides the break of humoral tolerance, T-cell tolerance against hepatic self-antigens was also broken and CD4(+) T cells were identified as essential drivers of the disease. As the disease was successfully treated with prednisolone and budesonide, the model will be helpful to develop and test new therapeutic interventions. CONCLUSION: We developed a new murine AIH model closely resembling AIH in patients that explains the mechanisms of AIH pathophysiology. In addition, emAIH provides options to test therapeutic alternatives for patients not achieving remission, with reduced side effects of chronic nonspecific immunosuppression.


Assuntos
Linfócitos T CD4-Positivos/fisiologia , Modelos Animais de Doenças , Interação Gene-Ambiente , Predisposição Genética para Doença/genética , Hepatite Autoimune/genética , Hepatite Autoimune/fisiopatologia , Adenoviridae/genética , Amônia-Liases/genética , Animais , Budesonida/uso terapêutico , Linfócitos T CD4-Positivos/patologia , Glucocorticoides/uso terapêutico , Glutamato Formimidoiltransferase/genética , Proteínas de Fluorescência Verde/genética , Hepatite Autoimune/tratamento farmacológico , Humanos , Camundongos , Camundongos Endogâmicos NOD , Enzimas Multifuncionais , Prednisolona/uso terapêutico , Resultado do Tratamento
19.
J Hum Genet ; 58(2): 109-12, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23303384

RESUMO

We previously reported 2 osteoporosis-susceptibility genes--formiminotransferase N-terminal sub-domain containing gene (FONG) and thrombospondin, type 1, domain-containing 7A (THSD7A)--in which we identified two common single-nucleotide polymorphisms, rs7605378 (FONG) and rs12673692 (THSD7A). The former was associated with a predisposition to osteoporosis and the latter with bone mineral density. To further elucidate the importance of these polymorphisms in the pathogenesis of osteoporosis, we examined their association with the incidence of vertebral fracture. DNA extracted from the renal cortex of 2427 consecutive Japanese autopsies (1331 men, mean age: 79 years; 1096 women, mean age: 82 years) were examined in this study. The presence or absence of vertebral fracture during each subject's lifetime was determined by a thorough examination of the clinical records, as well as autopsy reports. After adjustments for sex and age at autopsy, logistic regression analysis revealed that homozygotes for the risk alleles of rs7605378 (A-allele) or rs12673629 (A-allele) possess an increased risk of vertebral fracture. The subjects simultaneously homozygous for both the risk alleles of rs7605378 (AA genotype) and rs12673629 (AA genotype) showed significantly higher risk of vertebral fracture (odds ratio 2.401, 95% confidence interval 1.305-4.416, P = 0.0048) than those who had at least one non-risk allele of either rs7605378 (AC/CC genotypes) or rs12673629 (AG/GG genotypes). The results suggest that Japanese subjects homozygous for the risk alleles of rs7605378 and rs12673629 have a higher risk of vertebral fracture.


Assuntos
Glutamato Formimidoiltransferase/genética , Hidroximetil e Formil Transferases/genética , Fraturas da Coluna Vertebral/genética , Trombospondinas/genética , Idoso , Idoso de 80 Anos ou mais , Autopsia , Feminino , Genótipo , Glutamato Formimidoiltransferase/química , Humanos , Masculino
20.
Hepatology ; 57(1): 217-27, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22911361

RESUMO

UNLABELLED: Autoimmune hepatitis (AIH) is characterized by a loss of immunological tolerance to hepatocytes. Patients respond well to immunosuppression but progression to endstage liver disease occurs in 10%-20% of cases, leading to liver transplantation. Using a murine model of type 2 AIH, we identified susceptibility factors for autoimmune hepatitis and attempted to restore immunological tolerance to liver autoantigens. An increased ectopic expression of a liver autoantigen (FTCD) in the thymus leading to reduced numbers of circulating autoreactive T cells was sufficient to prevent development of AIH in mice. However, in the presence of a reduced central tolerance to FTCD, a strong regulatory T-cell response was able to inhibit proliferation of liver-specific autoreactive T cells and prevent AIH. Development of a severe AIH stemmed from reduced numbers of functional regulatory T cell (Tregs) leading to an increased proliferation of FTCD-specific autoreactive T and B cells. Adoptive transfer of ex vivo expanded CXCR3(+) Tregs in mice with AIH efficiently targeted the inflamed liver, restored peripheral tolerance to FTCD, and induced remission of AIH. CONCLUSION: Peripheral tolerance to liver autoantigens in AIH is paramount. Autologous infusion of ex vivo expanded CXCR3(+) Tregs in AIH patients could be an effective therapeutic approach to restore peripheral tolerance and induce remission of AIH.


Assuntos
Transferência Adotiva , Hepatite Autoimune/terapia , Tolerância Periférica , Linfócitos T Reguladores/transplante , Amônia-Liases , Animais , Proliferação de Células , Tolerância Central , Feminino , Fatores de Transcrição Forkhead/metabolismo , Glutamato Formimidoiltransferase , Hepatite Autoimune/imunologia , Subunidade alfa de Receptor de Interleucina-2/metabolismo , Fígado/imunologia , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Endogâmicos C57BL , Complexos Multienzimáticos/imunologia , Enzimas Multifuncionais , Receptores CXCR3/metabolismo , Indução de Remissão
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