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A reference genome for pea provides insight into legume genome evolution.
Kreplak, Jonathan; Madoui, Mohammed-Amin; Cápal, Petr; Novák, Petr; Labadie, Karine; Aubert, Grégoire; Bayer, Philipp E; Gali, Krishna K; Syme, Robert A; Main, Dorrie; Klein, Anthony; Bérard, Aurélie; Vrbová, Iva; Fournier, Cyril; d'Agata, Leo; Belser, Caroline; Berrabah, Wahiba; Toegelová, Helena; Milec, Zbynek; Vrána, Jan; Lee, HueyTyng; Kougbeadjo, Ayité; Térézol, Morgane; Huneau, Cécile; Turo, Chala J; Mohellibi, Nacer; Neumann, Pavel; Falque, Matthieu; Gallardo, Karine; McGee, Rebecca; Tar'an, Bunyamin; Bendahmane, Abdelhafid; Aury, Jean-Marc; Batley, Jacqueline; Le Paslier, Marie-Christine; Ellis, Noel; Warkentin, Thomas D; Coyne, Clarice J; Salse, Jérome; Edwards, David; Lichtenzveig, Judith; Macas, Jirí; Dolezel, Jaroslav; Wincker, Patrick; Burstin, Judith.
Affiliation
  • Kreplak J; Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
  • Madoui MA; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
  • Cápal P; Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
  • Novák P; Biology Centre, Czech Academy of Sciences, Ceské Budejovice, Czech Republic.
  • Labadie K; Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
  • Aubert G; Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
  • Bayer PE; School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.
  • Gali KK; Crop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
  • Syme RA; Centre for Crop and Disease Management, Curtin University, Bentley, Western Australia, Australia.
  • Main D; Department of Horticulture, Washington State University, Pullman, WA, USA.
  • Klein A; Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
  • Bérard A; Etude du Polymorphisme des Génomes Végétaux, INRA, Université Paris-Saclay, Evry, France.
  • Vrbová I; Biology Centre, Czech Academy of Sciences, Ceské Budejovice, Czech Republic.
  • Fournier C; Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
  • d'Agata L; Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
  • Belser C; Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
  • Berrabah W; Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
  • Toegelová H; Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
  • Milec Z; Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
  • Vrána J; Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
  • Lee H; School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.
  • Kougbeadjo A; Department of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig University, Giessen, Germany.
  • Térézol M; Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
  • Huneau C; Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
  • Turo CJ; UMR 1095 Génétique, Diversité, Ecophysiologie des Céréales, INRA, Université Clermont Auvergne, Clermont-Ferrand, France.
  • Mohellibi N; Centre for Crop and Disease Management, School of Molecular and Life Science, Curtin University, Bentley, Western Australia, Australia.
  • Neumann P; URGI, INRA, Université Paris-Saclay, Versailles, France.
  • Falque M; Biology Centre, Czech Academy of Sciences, Ceské Budejovice, Czech Republic.
  • Gallardo K; GQE-Le Moulon, INRA, University of Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, France.
  • McGee R; Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
  • Tar'an B; USDA Agricultural Research Service, Pullman, WA, USA.
  • Bendahmane A; Crop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
  • Aury JM; Institute of Plant Sciences Paris-Saclay, INRA, CNRS, University of Paris-Sud, University of Evry, University Paris-Diderot, Sorbonne Paris-Cite, University of Paris-Saclay, Orsay, France.
  • Batley J; Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
  • Le Paslier MC; School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.
  • Ellis N; Etude du Polymorphisme des Génomes Végétaux, INRA, Université Paris-Saclay, Evry, France.
  • Warkentin TD; School of Biological Sciences, University of Auckland, Auckland, New Zealand.
  • Coyne CJ; Crop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
  • Salse J; USDA Agricultural Research Service, Pullman, WA, USA.
  • Edwards D; UMR 1095 Génétique, Diversité, Ecophysiologie des Céréales, INRA, Université Clermont Auvergne, Clermont-Ferrand, France.
  • Lichtenzveig J; School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.
  • Macas J; School of Agriculture and Environment, University of Western Australia, Perth, Western Australia, Australia.
  • Dolezel J; Biology Centre, Czech Academy of Sciences, Ceské Budejovice, Czech Republic.
  • Wincker P; Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
  • Burstin J; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Nat Genet ; 51(9): 1411-1422, 2019 09.
Article in En | MEDLINE | ID: mdl-31477930
ABSTRACT
We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Plant Proteins / Pisum sativum / Genome, Plant / Evolution, Molecular / Chromosomes, Plant / Quantitative Trait Loci / Fabaceae Type of study: Prognostic_studies Language: En Journal: Nat Genet Journal subject: GENETICA MEDICA Year: 2019 Document type: Article Affiliation country:
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Plant Proteins / Pisum sativum / Genome, Plant / Evolution, Molecular / Chromosomes, Plant / Quantitative Trait Loci / Fabaceae Type of study: Prognostic_studies Language: En Journal: Nat Genet Journal subject: GENETICA MEDICA Year: 2019 Document type: Article Affiliation country: