GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences.
Microb Genom
; 10(6)2024 Jun.
Article
in En
| MEDLINE
| ID: mdl-38847800
ABSTRACT
Sequence comparison of 16S rRNA PCR amplicons is an established approach to taxonomically identify bacterial isolates and profile complex microbial communities. One potential application of recent advances in long-read sequencing technologies is to sequence entire rRNA operons and capture significantly more phylogenetic information compared to sequencing of the 16S rRNA (or regions thereof) alone, with the potential to increase the proportion of amplicons that can be reliably classified to lower taxonomic ranks. Here we describe GROND (Genome-derived Ribosomal Operon Database), a publicly available database of quality-checked 16S-ITS-23S rRNA operons, accompanied by multiple taxonomic classifications. GROND will aid researchers in analysis of their data and act as a standardised database to allow comparison of results between studies.
Key words
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Phylogeny
/
Bacteria
/
RNA, Ribosomal, 16S
Language:
En
Journal:
Microb Genom
/
Microb. genom
/
Microbial genomics
Year:
2024
Document type:
Article
Affiliation country:
Country of publication: