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pH-Controlled enzymatic computing for digital circuits and neural networks.
Agiza, Ahmed; Marriott, Stephen; Rosenstein, Jacob K; Kim, Eunsuk; Reda, Sherief.
Affiliation
  • Agiza A; Computer Science Department, Brown University, Providence, RI, USA. ahmed_agiza@brown.edu.
  • Marriott S; Department of Chemistry, Brown University, Providence, RI, USA.
  • Rosenstein JK; School of Engineering, Brown University, Providence, RI, USA.
  • Kim E; Department of Chemistry, Brown University, Providence, RI, USA.
  • Reda S; School of Engineering, Brown University, Providence, RI, USA.
Phys Chem Chem Phys ; 26(31): 20898-20907, 2024 Aug 07.
Article in En | MEDLINE | ID: mdl-39045608
ABSTRACT
Unconventional computing paradigms explore new methods for processing information beyond the capabilities of traditional electronic architectures. In this work, we present our approach to digital computation through enzymatic reactions in chemically buffered environments. A key aspect of this approach is its reliance on pH-sensitive enzymatic reactions, with the direction of the reaction controlled by maintaining pH levels within a specific range. When the pH crosses a defined threshold, the reaction moves forward and vice versa, akin to the switching action of electronic switches in digital circuits. The binary signals (0 and 1) are encoded as different concentrations of strong acids or bases, offering a bio-inspired method for computation. The final readout is done using UV-vis spectroscopy after applying detection reactions to indicate whether the output is 1 (indicated by the presence of the enzymatic reaction's product) or 0 (indicated by the absence of the enzymatic reaction's product). We build and evaluate a set of digital circuits in the lab using our proposed methodology to model the circuits using chemical reactions. In addition, we demonstrate the implementation of a neural network classifier using our framework.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Neural Networks, Computer Language: En Journal: PCCP. Phys. chem. chem. phys. (Print) / PCCP. Physical chemistry chemical physics (Print) / Phys Chem Chem Phys Journal subject: BIOFISICA / QUIMICA Year: 2024 Document type: Article Affiliation country: Country of publication:

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Neural Networks, Computer Language: En Journal: PCCP. Phys. chem. chem. phys. (Print) / PCCP. Physical chemistry chemical physics (Print) / Phys Chem Chem Phys Journal subject: BIOFISICA / QUIMICA Year: 2024 Document type: Article Affiliation country: Country of publication: