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Dynamic message-passing approach for kinetic spin models with reversible dynamics.
Del Ferraro, Gino; Aurell, Erik.
Affiliation
  • Del Ferraro G; Department of Computational Biology, AlbaNova University Centre, SE-106 91 Stockholm, Sweden.
  • Aurell E; Department of Computational Biology, AlbaNova University Centre, SE-106 91 Stockholm, Sweden.
Article in En | MEDLINE | ID: mdl-26274101
A method to approximately close the dynamic cavity equations for synchronous reversible dynamics on a locally treelike topology is presented. The method builds on (a) a graph expansion to eliminate loops from the normalizations of each step in the dynamics and (b) an assumption that a set of auxilary probability distributions on histories of pairs of spins mainly have dependencies that are local in time. The closure is then effectuated by projecting these probability distributions on n-step Markov processes. The method is shown in detail on the level of ordinary Markov processes (n=1) and outlined for higher-order approximations (n>1). Numerical validations of the technique are provided for the reconstruction of the transient and equilibrium dynamics of the kinetic Ising model on a random graph with arbitrary connectivity symmetry.
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Collection: 01-internacional Database: MEDLINE Main subject: Models, Theoretical Type of study: Health_economic_evaluation / Prognostic_studies Language: En Journal: Phys Rev E Stat Nonlin Soft Matter Phys Journal subject: BIOFISICA / FISIOLOGIA Year: 2015 Document type: Article Affiliation country: Suecia Country of publication: Estados Unidos
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Collection: 01-internacional Database: MEDLINE Main subject: Models, Theoretical Type of study: Health_economic_evaluation / Prognostic_studies Language: En Journal: Phys Rev E Stat Nonlin Soft Matter Phys Journal subject: BIOFISICA / FISIOLOGIA Year: 2015 Document type: Article Affiliation country: Suecia Country of publication: Estados Unidos