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Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses.
Daurer, Benedikt J; Okamoto, Kenta; Bielecki, Johan; Maia, Filipe R N C; Mühlig, Kerstin; Seibert, M Marvin; Hantke, Max F; Nettelblad, Carl; Benner, W Henry; Svenda, Martin; Tîmneanu, Nicusor; Ekeberg, Tomas; Loh, N Duane; Pietrini, Alberto; Zani, Alessandro; Rath, Asawari D; Westphal, Daniel; Kirian, Richard A; Awel, Salah; Wiedorn, Max O; van der Schot, Gijs; Carlsson, Gunilla H; Hasse, Dirk; Sellberg, Jonas A; Barty, Anton; Andreasson, Jakob; Boutet, Sébastien; Williams, Garth; Koglin, Jason; Andersson, Inger; Hajdu, Janos; Larsson, Daniel S D.
Affiliation
  • Daurer BJ; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Okamoto K; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Bielecki J; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Maia FRNC; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Mühlig K; NERSC, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Seibert MM; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Hantke MF; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Nettelblad C; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Benner WH; Division of Scientific Computing, Department of Information Technology, Science for Life Laboratory, Uppsala University, Lägerhyddsvägen 2 (Box 337), SE-751 05 Uppsala, Sweden.
  • Svenda M; Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
  • Tîmneanu N; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Ekeberg T; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Loh ND; Molecular and Condensed Matter Physics, Department of Physics and Astronomy, Uppsala University, Lägerhyddsvägen 1 (Box 516), SE-751 20 Uppsala, Sweden.
  • Pietrini A; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Zani A; Centre for BioImaging Sciences, National University of Singapore, Singapore.
  • Rath AD; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Westphal D; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Kirian RA; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Awel S; Bhabha Atomic Research Center, Mumbai 400 085, India.
  • Wiedorn MO; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • van der Schot G; Department of Physics, Arizona State University, Tempe, AZ 85287, USA.
  • Carlsson GH; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Hasse D; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Sellberg JA; The Hamburg Center for Ultrafast Imaging, University of Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany.
  • Barty A; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Andreasson J; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Boutet S; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Williams G; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Koglin J; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Andersson I; Biomedical and X-ray Physics, Department of Applied Physics, AlbaNova University Center, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden.
  • Hajdu J; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Larsson DSD; Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
IUCrJ ; 4(Pt 3): 251-262, 2017 May 01.
Article in En | MEDLINE | ID: mdl-28512572
ABSTRACT
This study explores the capabilities of the Coherent X-ray Imaging Instrument at the Linac Coherent Light Source to image small biological samples. The weak signal from small samples puts a significant demand on the experiment. Aerosolized Omono River virus particles of ∼40 nm in diameter were injected into the submicrometre X-ray focus at a reduced pressure. Diffraction patterns were recorded on two area detectors. The statistical nature of the measurements from many individual particles provided information about the intensity profile of the X-ray beam, phase variations in the wavefront and the size distribution of the injected particles. The results point to a wider than expected size distribution (from ∼35 to ∼300 nm in diameter). This is likely to be owing to nonvolatile contaminants from larger droplets during aerosolization and droplet evaporation. The results suggest that the concentration of nonvolatile contaminants and the ratio between the volumes of the initial droplet and the sample particles is critical in such studies. The maximum beam intensity in the focus was found to be 1.9 × 1012 photons per µm2 per pulse. The full-width of the focus at half-maximum was estimated to be 500 nm (assuming 20% beamline transmission), and this width is larger than expected. Under these conditions, the diffraction signal from a sample-sized particle remained above the average background to a resolution of 4.25 nm. The results suggest that reducing the size of the initial droplets during aerosolization is necessary to bring small particles into the scope of detailed structural studies with X-ray lasers.
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: IUCrJ Year: 2017 Document type: Article Affiliation country: Suecia

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: IUCrJ Year: 2017 Document type: Article Affiliation country: Suecia