An unusually short inter-molecular N-Hâ¯N hydrogen bond in crystals of the hemi-hydro-chloride salt of 1-exo-acetamido-pyrrolizidine.
Acta Crystallogr E Crystallogr Commun
; 76(Pt 1): 77-81, 2020 Jan 01.
Article
in En
| MEDLINE
| ID: mdl-31921456
The title compound [systematic name: (1R*, 8S)-2-acetamidoocta-hydro-pyrrol-izin-4-ium chloride-N-[(1R, 8S)-hexa-hydro-1H-pyrrolizin-2-yl)acetamide (1/1)], 2(C9H16N2O)·HCl or C9H17N2O+·Cl-·C9H16N2O, arose as an unexpected product when 1-exo-acetamido-pyrrolizidine (AcAP; C9H16N2O) was dissolved in CHCl3. Within the AcAP pyrrolizidine group, the unsubstituted five-membered ring is disordered over two orientations in a 0.897â
(5):0.103â
(5) ratio. Two AcAP mol-ecules related by a crystallographic twofold axis link to H+ and Cl- ions lying on the rotation axis, thereby forming N-Hâ¯N and N-Hâ¯Clâ¯H-N hydrogen bonds. The first of these has an unusually short Nâ¯N separation of 2.616â
(2)â
Å: refinement of different models against the present data set could not distinguish between a symmetrical hydrogen bond (H atom lying on the twofold axis and equidistant from the N atoms) or static or dynamic disorder models (i.e. N-Hâ¯N + Nâ¯H-N). Computational studies suggest that the disorder model is slightly more stable, but the energy difference is very small.
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Language:
En
Journal:
Acta Crystallogr E Crystallogr Commun
Year:
2020
Document type:
Article
Affiliation country:
Estados Unidos
Country of publication:
Reino Unido