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HEnRY: a DZIF LIMS tool for the collection and documentation of biomaterials in multicentre studies.
Heinen, Stephanie; Schulze, Nick; Franke, Bernd; Klein, Florian; Lehmann, Clara; Vehreschild, Maria J G T; Gloistein, Claas; Stecher, Melanie; Vehreschild, Jörg Janne.
Affiliation
  • Heinen S; Faculty of Medicine and University Hospital Cologne, Department I for Internal Medicine, University of Cologne, Herderstr. 52-54, 50931, Cologne, Germany. stephanie.heinen@uk-koeln.de.
  • Schulze N; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Cologne, Germany. stephanie.heinen@uk-koeln.de.
  • Franke B; Faculty of Medicine and University Hospital Cologne, Department I for Internal Medicine, University of Cologne, Herderstr. 52-54, 50931, Cologne, Germany.
  • Klein F; Faculty of Medicine and University Hospital Cologne, Department I for Internal Medicine, University of Cologne, Herderstr. 52-54, 50931, Cologne, Germany.
  • Lehmann C; Institute of Virology, University Hospital Cologne, Fürst-Pückler-Str. 56, 50935, Cologne, Germany.
  • Vehreschild MJGT; Medizinisches Versorgungszentrum, Fachbereich Infektiologie, University Hospital Cologne, Kerpener Str. 62, 50937, Cologne, Germany.
  • Gloistein C; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Cologne, Germany.
  • Stecher M; Head of Infectious Diseases, Department II of Internal Medicine, Goethe University Frankfurt, Frankfurt am Main, Germany.
  • Vehreschild JJ; Head of Clinical Microbiome Research Group, Department I for Internal Medicine, University of Cologne, Cologne, Germany.
BMC Bioinformatics ; 21(1): 290, 2020 Jul 08.
Article in En | MEDLINE | ID: mdl-32640981
ABSTRACT

BACKGROUND:

Well-characterized biomaterials of high quality have great potential for acceleration and quality improvement in translational biomedical research. To improve accessibility of local sample collections, efforts have been made to create central biomaterial banks and catalogues. Available technical solutions for creating professional local sample catalogues and connecting them to central systems are cost intensive and/or technically complex to implement. Therefore, the Translational Thematic Unit HIV of the German Center for Infection Research (DZIF) developed a Laboratory Information and Management System (LIMS) called HIV Engaged Research Technology (HEnRY) for implementation into the Translational Platform HIV (TP-HIV) at the DZIF and other research networks.

RESULTS:

HEnRY is developed at the University Hospital of Cologne. It is an advanced LIMS to manage processing and storage of samples and aliquots of different sample types. Features include monitoring of stored samples and associated information data selection via query tools or Structured Query Language (SQL) preparation of summary documents, including scannable search lists centralized management of the practical laboratory part of multicentre studies (e.g. import of drawing schemes and sample processing steps), preparation of aliquot shipments, including associated documents to be added to shipments unique and secure identification of aliquots through use of customizable Quick Response (QR) code labels directly from HEnRY support of aliquot data transmission to central registries. In summary, HEnRY offers all features necessary for a LIMS software. In addition, the structure of HEnRY provides sufficient flexibility to allow the implementation in other research areas.

CONCLUSION:

HEnRY is a free biobanking tool published under the MIT license. While it was developed to support HIV research in Germany, the feature set and language options, allow much broader applications and make this a powerful free research tool.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Biological Specimen Banks Type of study: Clinical_trials Limits: Humans Language: En Journal: BMC Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2020 Document type: Article Affiliation country: Alemania

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Biological Specimen Banks Type of study: Clinical_trials Limits: Humans Language: En Journal: BMC Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2020 Document type: Article Affiliation country: Alemania