Your browser doesn't support javascript.
loading
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Mayer, Gerhard; Müller, Wolfgang; Schork, Karin; Uszkoreit, Julian; Weidemann, Andreas; Wittig, Ulrike; Rey, Maja; Quast, Christian; Felden, Janine; Glöckner, Frank Oliver; Lange, Matthias; Arend, Daniel; Beier, Sebastian; Junker, Astrid; Scholz, Uwe; Schüler, Danuta; Kestler, Hans A; Wibberg, Daniel; Pühler, Alfred; Twardziok, Sven; Eils, Jürgen; Eils, Roland; Hoffmann, Steve; Eisenacher, Martin; Turewicz, Michael.
Affiliation
  • Mayer G; Ruhr University Bochum, Faculty of Medicine, Medizinisches Proteom-Center, Bochum, Germany.
  • Müller W; Ruhr University Bochum, Center for Protein Diagnostics (ProDi), Medical Proteome Analysis, Bochum, Germany.
  • Schork K; Ulm University, Institute of Medical Systems Biology, Ulm, Germany.
  • Uszkoreit J; Heidelberg Institute for Theoretical Studies (HITS gGmbH), Scientific Databases and Visualization Group, Heidelberg, Germany.
  • Weidemann A; Ruhr University Bochum, Faculty of Medicine, Medizinisches Proteom-Center, Bochum, Germany.
  • Wittig U; Ruhr University Bochum, Center for Protein Diagnostics (ProDi), Medical Proteome Analysis, Bochum, Germany.
  • Rey M; Ruhr University Bochum, Faculty of Medicine, Medizinisches Proteom-Center, Bochum, Germany.
  • Quast C; Ruhr University Bochum, Center for Protein Diagnostics (ProDi), Medical Proteome Analysis, Bochum, Germany.
  • Felden J; Heidelberg Institute for Theoretical Studies (HITS gGmbH), Scientific Databases and Visualization Group, Heidelberg, Germany.
  • Glöckner FO; Heidelberg Institute for Theoretical Studies (HITS gGmbH), Scientific Databases and Visualization Group, Heidelberg, Germany.
  • Lange M; Heidelberg Institute for Theoretical Studies (HITS gGmbH), Scientific Databases and Visualization Group, Heidelberg, Germany.
  • Arend D; Jacobs University Bremen gGmbH, Bremen, Germany.
  • Beier S; Jacobs University Bremen gGmbH, Bremen, Germany.
  • Junker A; University of Bremen, MARUM - Center for Marine Environmental Sciences, Bremen, Germany.
  • Scholz U; Jacobs University Bremen gGmbH, Bremen, Germany.
  • Schüler D; University of Bremen, MARUM - Center for Marine Environmental Sciences, Bremen, Germany.
  • Kestler HA; Alfred Wegener Institute - Helmholtz Center for Polar- and Marine Research, Bremerhaven, Germany.
  • Wibberg D; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
  • Pühler A; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
  • Twardziok S; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
  • Eils J; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
  • Eils R; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
  • Hoffmann S; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
  • Eisenacher M; Ulm University, Institute of Medical Systems Biology, Ulm, Germany.
  • Turewicz M; Leibniz Institute on Ageing - Fritz Lipmann Institute, Jena.
Brief Bioinform ; 22(5)2021 09 02.
Article in En | MEDLINE | ID: mdl-33589928
ABSTRACT
This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusable) data principles in a large distributed bioinformatics infrastructure. We address the challenge of heterogeneity of wet lab technologies, data, metadata, software, computational workflows and the levels of implementation and monitoring of FAIR principles within the different bioinformatics sub-disciplines joint in de.NBI. On the one hand, this broad service landscape and the excellent network of experts are a strong basis for the development of useful research data management plans. On the other hand, the large number of tools and techniques maintained by distributed teams renders FAIR compliance challenging.
Subject(s)
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Neural Networks, Computer / Proteomics / Metadata / Data Management Limits: Humans Language: En Journal: Brief Bioinform Journal subject: BIOLOGIA / INFORMATICA MEDICA Year: 2021 Document type: Article Affiliation country: Alemania

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Neural Networks, Computer / Proteomics / Metadata / Data Management Limits: Humans Language: En Journal: Brief Bioinform Journal subject: BIOLOGIA / INFORMATICA MEDICA Year: 2021 Document type: Article Affiliation country: Alemania