nudt7 gene depletion causes transcriptomic change in early development of zebrafish.

Bhandari, Sushil; Hong, KwangHeum; Miyawaki-Kuwakado, Atsuko; Tomimatsu, Kosuke; Kim, Yong-Il; Nam, In-Koo; Sagerström, Charles G; Nakamura, Mako; Choe, Seong-Kyu

Bhandari, Sushil; Hong, KwangHeum; Miyawaki-Kuwakado, Atsuko; Tomimatsu, Kosuke; Kim, Yong-Il; Nam, In-Koo; Sagerström, Charles G; Nakamura, Mako; Choe, Seong-Kyu.

Affiliation

Bhandari S; Department of Medicine, Graduate School, Wonkwang University, 460 Iksadae-ro, Iksan, 54538 South Korea.
Hong K; Department of Medicine, Graduate School, Wonkwang University, 460 Iksadae-ro, Iksan, 54538 South Korea.
Miyawaki-Kuwakado A; Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 8128582 Japan.
Tomimatsu K; Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 8128582 Japan.
Kim YI; Department of Medicine, Graduate School, Wonkwang University, 460 Iksadae-ro, Iksan, 54538 South Korea.
Nam IK; Institute of Brain Science, Wonkwang University, 460 Iksadae-ro, Iksan, 54538 South Korea.
Sagerström CG; Department of Pediatrics, University of Colorado Medical School, 13001 East 17th Place, Campus Box C290, Aurora, CO 80045, USA.
Nakamura M; Faculty of Agriculture, Kyushu University, 744 Motooka Nishi-Ku, Fukuoka, 8190395 Japan.
Choe SK; Department of Microbiology, Wonkwang University School of Medicine, 460 Iksadae-ro, Iksan, 54538 South Korea.

J Biochem ; 173(1): 53-63, 2022 Dec 27.

Article in En | MEDLINE | ID: mdl-36270274

Subject(s)
Key words

ChIP-seq.Abbreviations: (ChIP-seq), chromatin immunoprecipitation sequencing; (CRISPR), clustered regularly interspaced short palindromic repeats; (DEG), differentially expressed genes; (DHA), docosahexaenoic acid; (EGFP), enhanced green fluorescence protein; (ERK), extracellular-signal-regulated kinase; (FDR), false discovery rate; (GO), gene ontology; (H3K27ac), histone 3 acetylated at lysine 27; (hpf), hours post-fertilization; (IGV), Integrative Genome Viewer; (KO), knockout; (Nudt), Nudix; (PCA), principal component analysis; (Pex), peroxin; (PTS1), peroxisomal localization signal sequence 1; (TSS), transcription start site; (WT), wild-type; (ZGA), zygotic gene activation; Nudt family; RNA-seq; zebrafish; zygotic gene activation

Fulltext

Add to My VHL

XML

PubMed Links

Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Zebrafish / Transcriptome Type of study: Etiology_studies Limits: Animals Language: En Journal: J Biochem Year: 2022 Document type: Article Country of publication: Reino Unido

Fulltext

Add to My VHL

XML

PubMed Links

Search on Google