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Transition1x - a dataset for building generalizable reactive machine learning potentials.
Schreiner, Mathias; Bhowmik, Arghya; Vegge, Tejs; Busk, Jonas; Winther, Ole.
Affiliation
  • Schreiner M; DTU Compute, Technical University of Denmark (DTU), 2800, Lyngby, Denmark. matschreiner@gmail.com.
  • Bhowmik A; DTU Energy, Technical University of Denmark, 2800, Lyngby, Denmark.
  • Vegge T; DTU Energy, Technical University of Denmark, 2800, Lyngby, Denmark.
  • Busk J; DTU Energy, Technical University of Denmark, 2800, Lyngby, Denmark.
  • Winther O; DTU Compute, Technical University of Denmark (DTU), 2800, Lyngby, Denmark.
Sci Data ; 9(1): 779, 2022 12 24.
Article in En | MEDLINE | ID: mdl-36566281
Machine Learning (ML) models have, in contrast to their usefulness in molecular dynamics studies, had limited success as surrogate potentials for reaction barrier search. This is primarily because available datasets for training ML models on small molecular systems almost exclusively contain configurations at or near equilibrium. In this work, we present the dataset Transition1x containing 9.6 million Density Functional Theory (DFT) calculations of forces and energies of molecular configurations on and around reaction pathways at the ωB97x/6-31 G(d) level of theory. The data was generated by running Nudged Elastic Band (NEB) with DFT on 10k organic reactions of various types while saving intermediate calculations. We train equivariant graph message-passing neural network models on Transition1x and cross-validate on the popular ANI1x and QM9 datasets. We show that ML models cannot learn features in transition state regions solely by training on hitherto popular benchmark datasets. Transition1x is a new challenging benchmark that will provide an important step towards developing next-generation ML force fields that also work far away from equilibrium configurations and reactive systems.

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Sci Data Year: 2022 Document type: Article Affiliation country: Dinamarca Country of publication: Reino Unido

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Sci Data Year: 2022 Document type: Article Affiliation country: Dinamarca Country of publication: Reino Unido