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A comparison of neuroelectrophysiology databases.
Subash, Priyanka; Gray, Alex; Boswell, Misque; Cohen, Samantha L; Garner, Rachael; Salehi, Sana; Fisher, Calvary; Hobel, Samuel; Ghosh, Satrajit; Halchenko, Yaroslav; Dichter, Benjamin; Poldrack, Russell A; Markiewicz, Chris; Hermes, Dora; Delorme, Arnaud; Makeig, Scott; Behan, Brendan; Sparks, Alana; Arnott, Stephen R; Wang, Zhengjia; Magnotti, John; Beauchamp, Michael S; Pouratian, Nader; Toga, Arthur W; Duncan, Dominique.
Affiliation
  • Subash P; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Gray A; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Boswell M; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Cohen SL; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Garner R; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Salehi S; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Fisher C; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Hobel S; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Ghosh S; McGovern Institute for Brain Research, MIT Brain and Cognitive Sciences, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.
  • Halchenko Y; Department of Psychological & Brain Sciences, Center for Cognitive Neuroscience, Dartmouth Brain Imaging Center, Dartmouth College, 6207 Moore Hall, Hanover, NH, 03755, USA.
  • Dichter B; CatalystNeuro, Benicia, CA, 94510, USA.
  • Poldrack RA; Department of Psychology, Stanford University, 450 Jane Stanford Way, Stanford, CA, 94305, USA.
  • Markiewicz C; Department of Psychology, Stanford University, 450 Jane Stanford Way, Stanford, CA, 94305, USA.
  • Hermes D; Mayo Clinic, Department of Physiology & Biomedical Engineering, 200 1st Street SW, Rochester, MN, 55905, USA.
  • Delorme A; Swartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla, CA, 92093, USA.
  • Makeig S; Swartz Center of Computational Neuroscience, INC, University of California San Diego, La Jolla, CA, 92093, USA.
  • Behan B; Ontario Brain Institute, 1 Richmond Street West, Toronto, ON, M5H 3W4, Canada.
  • Sparks A; Indoc Research, Toronto, ON, Canada.
  • Arnott SR; Rotman Research Institute, Toronto, ON, Canada.
  • Wang Z; Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA.
  • Magnotti J; Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA.
  • Beauchamp MS; Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, 3700 Hamilton Walk, Philadelphia, PA, 19104, USA.
  • Pouratian N; Department of Neurological Surgery, University of Texas Southwestern Medical Center, 5303 Harry Hines Blvd, Dallas, TX, 75390, USA.
  • Toga AW; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA.
  • Duncan D; Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Avenue, Los Angeles, CA, 90033, USA. duncand@usc.edu.
Sci Data ; 10(1): 719, 2023 10 19.
Article in En | MEDLINE | ID: mdl-37857685
ABSTRACT
As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories Data Archive for the BRAIN Initiative (DABI), Distributed Archives for Neurophysiology Data Integration (DANDI), OpenNeuro, and Brain-CODE. The aim of this review is to describe archives that provide researchers with tools to store, share, and reanalyze both human and non-human neurophysiology data based on criteria that are of interest to the neuroscientific community. The Brain Imaging Data Structure (BIDS) and Neurodata Without Borders (NWB) are utilized by these archives to make data more accessible to researchers by implementing a common standard. As the necessity for integrating large-scale analysis into data repository platforms continues to grow within the neuroscientific community, this article will highlight the various analytical and customizable tools developed within the chosen archives that may advance the field of neuroinformatics.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Information Dissemination / Neurophysiology Language: En Journal: Sci Data Year: 2023 Document type: Article Affiliation country: Estados Unidos
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Information Dissemination / Neurophysiology Language: En Journal: Sci Data Year: 2023 Document type: Article Affiliation country: Estados Unidos