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A chromosome-level genome assembly of the Korean crossbred pig Nanchukmacdon (Sus scrofa).
Kwon, Daehong; Park, Nayoung; Wy, Suyeon; Lee, Daehwan; Chai, Han-Ha; Cho, In-Cheol; Lee, Jongin; Kwon, Kisang; Kim, Heesun; Moon, Youngbeen; Kim, Juyeon; Park, Woncheoul; Kim, Jaebum.
Affiliation
  • Kwon D; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Park N; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Wy S; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Lee D; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Chai HH; Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea.
  • Cho IC; Subtropical Livestock Research Institute, National Institute of Animal Science, RDA, Jeju, 63242, Republic of Korea.
  • Lee J; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Kwon K; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Kim H; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Moon Y; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Kim J; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea.
  • Park W; Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, 55365, Republic of Korea. wcpark1982@korea.kr.
  • Kim J; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Republic of Korea. jbkim@konkuk.ac.kr.
Sci Data ; 10(1): 761, 2023 11 03.
Article in En | MEDLINE | ID: mdl-37923776
ABSTRACT
As plentiful high-quality genome assemblies have been accumulated, reference-guided genome assembly can be a good approach to reconstruct a high-quality assembly. Here, we present a chromosome-level genome assembly of the Korean crossbred pig called Nanchukmacdon (the NCMD assembly) using the reference-guided assembly approach with short and long reads. The NCMD assembly contains 20 chromosome-level scaffolds with a total size of 2.38 Gbp (N50 138.77 Mbp). Its BUSCO score is 93.1%, which is comparable to the pig reference assembly, and a total of 20,588 protein-coding genes, 8,651 non-coding genes, and 996.14 Mbp of repetitive elements are annotated. The NCMD assembly was also used to close many gaps in the pig reference assembly. This NCMD assembly and annotation provide foundational resources for the genomic analyses of pig and related species.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Swine / Chromosomes / Genome / Sus scrofa Limits: Animals Country/Region as subject: Asia Language: En Journal: Sci Data Year: 2023 Document type: Article
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Swine / Chromosomes / Genome / Sus scrofa Limits: Animals Country/Region as subject: Asia Language: En Journal: Sci Data Year: 2023 Document type: Article