Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata).
Sci Data
; 10(1): 901, 2023 Dec 15.
Article
in En
| MEDLINE
| ID: mdl-38102170
ABSTRACT
Microcos paniculata is a shrub used traditionally as folk medicine and to make herbal teas. Previous research into this species has mainly focused on its chemical composition and medicinal value. However, the lack of a reference genome limits the study of the molecular mechanisms of active compounds in this species. Here, we assembled a haplotype-resolved chromosome-level genome of M. paniculata based on PacBio HiFi and Hi-C data. The assembly contains two haploid genomes with sizes 399.43 Mb and 393.10 Mb, with contig N50 lengths of 43.44 Mb and 30.17 Mb, respectively. About 99.93% of the assembled sequences could be anchored to 18 pseudo-chromosomes. Additionally, a total of 482 Mb repeat sequences were identified, accounting for 60.76% of the genome. A total of 49,439 protein-coding genes were identified, of which 48,979 (99%) were functionally annotated. This haplotype-resolved chromosome-level assembly and annotation of M. paniculata will serve as a valuable resource for investigating the biosynthesis and genetic basis of active compounds in this species, as well as advancing evolutionary phylogenomic studies in Malvales.
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Genome, Plant
/
Chromosomes, Plant
Language:
En
Journal:
Sci Data
Year:
2023
Document type:
Article
Affiliation country:
China
Country of publication:
Reino Unido