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Rapid assessment of changes in phage bioactivity using dynamic light scattering.
Dharmaraj, Tejas; Kratochvil, Michael J; Pourtois, Julie D; Chen, Qingquan; Hajfathalian, Maryam; Hargil, Aviv; Lin, Yung-Hao; Evans, Zoe; Oromí-Bosch, Agnès; Berry, Joel D; McBride, Robert; Haddock, Naomi L; Holman, Derek R; van Belleghem, Jonas D; Chang, Tony H; Barr, Jeremy J; Lavigne, Rob; Heilshorn, Sarah C; Blankenberg, Francis G; Bollyky, Paul L.
Affiliation
  • Dharmaraj T; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • Kratochvil MJ; Sarafan ChEM-H, Stanford University, Stanford, CA 94305, USA.
  • Pourtois JD; Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA.
  • Chen Q; Department of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950, USA.
  • Hajfathalian M; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • Hargil A; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • Lin YH; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • Evans Z; Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA.
  • Oromí-Bosch A; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • Berry JD; Felix Biotechnology, South SanFrancisco, CA 94080, USA.
  • McBride R; Felix Biotechnology, South SanFrancisco, CA 94080, USA.
  • Haddock NL; Felix Biotechnology, South SanFrancisco, CA 94080, USA.
  • Holman DR; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • van Belleghem JD; Division of Gastroenterology and Hepatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Chang TH; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • Barr JJ; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Beckman Center for Molecular and Genetic Medicine, Stanford, CA 94305, USA.
  • Lavigne R; School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.
  • Heilshorn SC; Department of Biosystems, KU Leuven, Leuven 3001, Belgium.
  • Blankenberg FG; Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA.
  • Bollyky PL; Division of Pediatric Radiology and Nuclear Medicine, Department of Radiology, Lucile Packard Children's Hospital, Stanford, CA 94305, USA.
PNAS Nexus ; 2(12): pgad406, 2023 Dec.
Article in En | MEDLINE | ID: mdl-38111822
ABSTRACT
Extensive efforts are underway to develop bacteriophages as therapies against antibiotic-resistant bacteria. However, these efforts are confounded by the instability of phage preparations and a lack of suitable tools to assess active phage concentrations over time. In this study, we use dynamic light scattering (DLS) to measure changes in phage physical state in response to environmental factors and time, finding that phages tend to decay and form aggregates and that the degree of aggregation can be used to predict phage bioactivity. We then use DLS to optimize phage storage conditions for phages from human clinical trials, predict bioactivity in 50-y-old archival stocks, and evaluate phage samples for use in a phage therapy/wound infection model. We also provide a web application (Phage-Estimator of Lytic Function) to facilitate DLS studies of phages. We conclude that DLS provides a rapid, convenient, and nondestructive tool for quality control of phage preparations in academic and commercial settings.
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: PNAS Nexus Year: 2023 Document type: Article Affiliation country: Estados Unidos

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: PNAS Nexus Year: 2023 Document type: Article Affiliation country: Estados Unidos
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