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Clinical domain knowledge-derived template improves post hoc AI explanations in pneumothorax classification.
Yuan, Han; Hong, Chuan; Jiang, Peng-Tao; Zhao, Gangming; Tran, Nguyen Tuan Anh; Xu, Xinxing; Yan, Yet Yen; Liu, Nan.
Affiliation
  • Yuan H; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore.
  • Hong C; Department of Biostatistics and Bioinformatics, Duke University, USA.
  • Jiang PT; College of Computer Science, Nankai University, China.
  • Zhao G; Faculty of Engineering, The University of Hong Kong, China.
  • Tran NTA; Department of Diagnostic Radiology, Singapore General Hospital, Singapore.
  • Xu X; Institute of High Performance Computing, Agency for Science, Technology and Research, Singapore.
  • Yan YY; Department of Radiology, Changi General Hospital, Singapore.
  • Liu N; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore; Programme in Health Services and Systems Research, Duke-NUS Medical School, Singapore; Institute of Data Science, National University of Singapore, Singapore. Electronic address: liu.nan@dukenus.edu.sg.
J Biomed Inform ; 156: 104673, 2024 Aug.
Article in En | MEDLINE | ID: mdl-38862083
ABSTRACT

OBJECTIVE:

Pneumothorax is an acute thoracic disease caused by abnormal air collection between the lungs and chest wall. Recently, artificial intelligence (AI), especially deep learning (DL), has been increasingly employed for automating the diagnostic process of pneumothorax. To address the opaqueness often associated with DL models, explainable artificial intelligence (XAI) methods have been introduced to outline regions related to pneumothorax. However, these explanations sometimes diverge from actual lesion areas, highlighting the need for further improvement.

METHOD:

We propose a template-guided approach to incorporate the clinical knowledge of pneumothorax into model explanations generated by XAI methods, thereby enhancing the quality of the explanations. Utilizing one lesion delineation created by radiologists, our approach first generates a template that represents potential areas of pneumothorax occurrence. This template is then superimposed on model explanations to filter out extraneous explanations that fall outside the template's boundaries. To validate its efficacy, we carried out a comparative analysis of three XAI methods (Saliency Map, Grad-CAM, and Integrated Gradients) with and without our template guidance when explaining two DL models (VGG-19 and ResNet-50) in two real-world datasets (SIIM-ACR and ChestX-Det).

RESULTS:

The proposed approach consistently improved baseline XAI methods across twelve benchmark scenarios built on three XAI methods, two DL models, and two datasets. The average incremental percentages, calculated by the performance improvements over the baseline performance, were 97.8% in Intersection over Union (IoU) and 94.1% in Dice Similarity Coefficient (DSC) when comparing model explanations and ground-truth lesion areas. We further visualized baseline and template-guided model explanations on radiographs to showcase the performance of our approach.

CONCLUSIONS:

In the context of pneumothorax diagnoses, we proposed a template-guided approach for improving model explanations. Our approach not only aligns model explanations more closely with clinical insights but also exhibits extensibility to other thoracic diseases. We anticipate that our template guidance will forge a novel approach to elucidating AI models by integrating clinical domain expertise.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Pneumothorax / Artificial Intelligence / Deep Learning Limits: Humans Language: En Journal: J Biomed Inform Journal subject: INFORMATICA MEDICA Year: 2024 Document type: Article Affiliation country: Singapur

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Pneumothorax / Artificial Intelligence / Deep Learning Limits: Humans Language: En Journal: J Biomed Inform Journal subject: INFORMATICA MEDICA Year: 2024 Document type: Article Affiliation country: Singapur