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Chromosome-level genome assembly of an oligophagous leaf beetle Ophraella communa (Coleoptera: Chrysomelidae).
Wang, Yi-Ting; Zhang, Yan; Ma, Chao; Ma, Wei-Hua; Cao, Li-Jun; Chen, Jin-Cui; Song, Wei; Yang, Jing-Fang; Gao, Xu-Yuan; Chen, Hong-Song; Tian, Zhen-Ya; Desneux, Nicolas; Wei, Shu-Jun; Zhou, Zhong-Shi.
Affiliation
  • Wang YT; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
  • Zhang Y; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Ma C; National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya, 572019, China.
  • Ma WH; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
  • Cao LJ; National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya, 572019, China.
  • Chen JC; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
  • Song W; National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya, 572019, China.
  • Yang JF; Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
  • Gao XY; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Chen HS; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Tian ZY; Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
  • Desneux N; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
  • Wei SJ; National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya, 572019, China.
  • Zhou ZS; National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya, 572019, China.
Sci Data ; 11(1): 735, 2024 Jul 06.
Article in En | MEDLINE | ID: mdl-38971852
ABSTRACT
The leaf beetle Ophraella communa LeSage (Coleoptera Chrysomelidae) is an effective biological control agent of the common ragweed. Here, we assembled a chromosome-level genome of the O. communa by combining Illumina, Nanopore, and Hi-C sequencing technologies. The genome size of the final genome assembly is 733.1 Mb, encompassing 17 chromosomes, with an improved contig N50 of 7.05 Mb compared to the original version. Genome annotation reveals 25,873 protein-coding genes, with functional annotations available for 22,084 genes (85.35%). Non-coding sequence annotation identified 204 rRNAs, 626 tRNAs, and 1791 small RNAs. Repetitive elements occupy 414.41 Mb, constituting 57.76% of the genome. This high-quality genome is fundamental for advancing biological control strategies employing O. communa.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Coleoptera / Genome, Insect Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: China
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Coleoptera / Genome, Insect Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: China