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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation.
Theobald, Sebastian; Vesth, Tammi C; Geib, Elena; Nybo, Jane L; Frisvad, Jens C; Larsen, Thomas O; Kuo, Alan; LaButti, Kurt; Lyhne, Ellen K; Kjærbølling, Inge; Ledsgaard, Line; Barry, Kerrie; Clum, Alicia; Chen, Cindy; Nolan, Matt; Sandor, Laura; Lipzen, Anna; Mondo, Stephen; Pangilinan, Jasmyn; Salamov, Asaf; Riley, Robert; Wiebenga, Ad; Müller, Astrid; Kun, Roland S; Dos Santos Gomes, Ana Carolina; Henrissat, Bernard; Magnuson, Jon K; Simmons, Blake A; Mäkelä, Miia R; Mortensen, Uffe H; Grigoriev, Igor V; Brock, Matthias; Baker, Scott E; de Vries, Ronald P; Andersen, Mikael R.
Affiliation
  • Theobald S; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Vesth TC; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Geib E; School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK.
  • Nybo JL; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Frisvad JC; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Larsen TO; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Kuo A; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • LaButti K; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Lyhne EK; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Kjærbølling I; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Ledsgaard L; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Barry K; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Clum A; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Chen C; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Nolan M; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Sandor L; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Lipzen A; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Mondo S; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Pangilinan J; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Salamov A; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Riley R; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Wiebenga A; Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands.
  • Müller A; Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands.
  • Kun RS; Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands.
  • Dos Santos Gomes AC; Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands.
  • Henrissat B; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • Magnuson JK; Department of Biological Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia.
  • Simmons BA; Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
  • Mäkelä MR; US Department of Energy Joint Bioenergy Institute, 5885 Hollis St., Emeryville, CA 94608, USA.
  • Mortensen UH; Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
  • Grigoriev IV; Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Brock M; Department of Microbiology, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland.
  • Baker SE; Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
  • de Vries RP; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Andersen MR; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA.
J Fungi (Basel) ; 10(7)2024 Jul 22.
Article in En | MEDLINE | ID: mdl-39057392
ABSTRACT
Aspergillus terreus has attracted interest due to its application in industrial biotechnology, particularly for the production of itaconic acid and bioactive secondary metabolites. As related species also seem to possess a prosperous secondary metabolism, they are of high interest for genome mining and exploitation. Here, we present draft genome sequences for six species from Aspergillus section Terrei and one species from Aspergillus section Nidulantes. Whole-genome phylogeny confirmed that section Terrei is monophyletic. Genome analyses identified between 70 and 108 key secondary metabolism genes in each of the genomes of section Terrei, the highest rate found in the genus Aspergillus so far. The respective enzymes fall into 167 distinct families with most of them corresponding to potentially unique compounds or compound families. Moreover, 53% of the families were only found in a single species, which supports the suitability of species from section Terrei for further genome mining. Intriguingly, this analysis, combined with heterologous gene expression and metabolite identification, suggested that species from section Terrei use a strategy for UV protection different to other species from the genus Aspergillus. Section Terrei contains a complete plant polysaccharide degrading potential and an even higher cellulolytic potential than other Aspergilli, possibly facilitating additional applications for these species in biotechnology.
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: J Fungi (Basel) Year: 2024 Document type: Article Affiliation country: Dinamarca Country of publication: Suiza

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: J Fungi (Basel) Year: 2024 Document type: Article Affiliation country: Dinamarca Country of publication: Suiza