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Mantra 2.0: an online collaborative resource for drug mode of action and repurposing by network analysis.
Carrella, Diego; Napolitano, Francesco; Rispoli, Rossella; Miglietta, Mario; Carissimo, Annamaria; Cutillo, Luisa; Sirci, Francesco; Gregoretti, Francesco; Di Bernardo, Diego.
Affiliation
  • Carrella D; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Napolitano F; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Rispoli R; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Miglietta M; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Carissimo A; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Cutillo L; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Sirci F; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Gregoretti F; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
  • Di Bernardo D; Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Interactive SRL, Via Fratelli Bisogno 5, 83100 Avellino, Dip. di Studi Aziendali e Quantitativi Università degli studi di Napoli 'Parthenope', Via Generale Parisi 13, 80132 Naples, Institute for High-Performance Comput
Bioinformatics ; 30(12): 1787-8, 2014 Jun 15.
Article in En | MEDLINE | ID: mdl-24558125
SUMMARY: Elucidation of molecular targets of a compound [mode of action (MoA)] and its off-targets is a crucial step in drug development. We developed an online collaborative resource (MANTRA 2.0) that supports this process by exploiting similarities between drug-induced transcriptional profiles. Drugs are organized in a network of nodes (drugs) and edges (similarities) highlighting 'communities' of drugs sharing a similar MoA. A user can upload gene expression profiles before and after drug treatment in one or multiple cell types. An automated processing pipeline transforms the gene expression profiles into a unique drug 'node' embedded in the drug-network. Visual inspection of the neighbouring drugs and communities helps in revealing its MoA and to suggest new applications of known drugs (drug repurposing). MANTRA 2.0 allows storing and sharing user-generated network nodes, thus making MANTRA 2.0 a collaborative ever-growing resource. AVAILABILITY AND IMPLEMENTATION: The web tool is freely available for academic use at http://mantra.tigem.it.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Gene Expression Profiling / Drug Discovery / Drug Repositioning Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2014 Document type: Article Country of publication: United kingdom
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Gene Expression Profiling / Drug Discovery / Drug Repositioning Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2014 Document type: Article Country of publication: United kingdom