New astrovirus in human feces from Burkina Faso.

ABSTRACT

BACKGROUND: A significant fraction of cases of diarrhea, a leading cause of childhood mortality worldwide, remain unexplained. OBJECTIVES: To identify viruses in unexplained cases of diarrhea using an unbiased metagenomics approach. STUDY DESIGN: Viral nucleic acids were enriched from the feces from 48 cases of unexplained diarrhea from Burkina Faso, sequenced, and compared against all known viral genomes. RESULTS: The full genome of a highly divergent astrovirus was sequenced in a sample co-infected with parechovirus 1. RT-PCR identified a single astrovirus infection in these 48 patients indicating a low prevalence. Human astrovirus-BF34 was most closely related to mamastrovirus species 8 and 9 also found in human with which it shared 62%, 74%, and 57% amino acid identities over its protease, RNA dependent RNA polymerase and capsid proteins, respectively. CONCLUSIONS: Burkina Faso astrovirus is proposed as prototype for a novel species in the genus Mamastrovirus, here tentatively called Mamastrovirus 20, representing the fifth human astrovirus species.