Mechanical unfolding of a simple model protein goes beyond the reach of one-dimensional descriptions.
J Chem Phys
; 141(13): 135102, 2014 Oct 07.
Article
in En
| MEDLINE
| ID: mdl-25296840
We study the mechanical unfolding of a simple model protein. The Langevin dynamics results are analyzed using Markov-model methods which allow to describe completely the configurational space of the system. Using transition-path theory we also provide a quantitative description of the unfolding pathways followed by the system. Our study shows a complex dynamical scenario. In particular, we see that the usual one-dimensional picture: free-energy vs end-to-end distance representation, gives a misleading description of the process. Unfolding can occur following different pathways and configurations which seem to play a central role in one-dimensional pictures are not the intermediate states of the unfolding dynamics.
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Proteins
/
Protein Unfolding
Type of study:
Health_economic_evaluation
Language:
En
Journal:
J Chem Phys
Year:
2014
Document type:
Article
Affiliation country:
Spain
Country of publication:
United States