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Mechanical unfolding of a simple model protein goes beyond the reach of one-dimensional descriptions.
Tapia-Rojo, R; Arregui, S; Mazo, J J; Falo, F.
Affiliation
  • Tapia-Rojo R; Instituto de Biocomputación y Física de Sistemas Complejos and Departamento de Física de la Materia Condensada, Universidad de Zaragoza, 50009 Zaragoza, Spain.
  • Arregui S; Instituto de Biocomputación y Física de Sistemas Complejos and Departamento de Física de la Materia Condensada, Universidad de Zaragoza, 50009 Zaragoza, Spain.
  • Mazo JJ; Instituto de Ciencia de Materiales de Aragón and Departamento de Física de la Materia Condensada, CSIC-Universidad de Zaragoza, 50009 Zaragoza, Spain.
  • Falo F; Instituto de Biocomputación y Física de Sistemas Complejos and Departamento de Física de la Materia Condensada, Universidad de Zaragoza, 50009 Zaragoza, Spain.
J Chem Phys ; 141(13): 135102, 2014 Oct 07.
Article in En | MEDLINE | ID: mdl-25296840
We study the mechanical unfolding of a simple model protein. The Langevin dynamics results are analyzed using Markov-model methods which allow to describe completely the configurational space of the system. Using transition-path theory we also provide a quantitative description of the unfolding pathways followed by the system. Our study shows a complex dynamical scenario. In particular, we see that the usual one-dimensional picture: free-energy vs end-to-end distance representation, gives a misleading description of the process. Unfolding can occur following different pathways and configurations which seem to play a central role in one-dimensional pictures are not the intermediate states of the unfolding dynamics.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Proteins / Protein Unfolding Type of study: Health_economic_evaluation Language: En Journal: J Chem Phys Year: 2014 Document type: Article Affiliation country: Spain Country of publication: United States

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Proteins / Protein Unfolding Type of study: Health_economic_evaluation Language: En Journal: J Chem Phys Year: 2014 Document type: Article Affiliation country: Spain Country of publication: United States