Binding site discovery from nucleic acid sequences by discriminative learning of hidden Markov models.

Maaskola, Jonas; Rajewsky, Nikolaus

Maaskola, Jonas; Rajewsky, Nikolaus.

Affiliation

Maaskola J; Laboratory for Systems Biology of Gene Regulatory Elements, Max-Delbrück-Center for Molecular Medicine, Robert-Rössle-Strasse 10, Berlin-Buch 13125, Germany jonas@maaskola.de.
Rajewsky N; Laboratory for Systems Biology of Gene Regulatory Elements, Max-Delbrück-Center for Molecular Medicine, Robert-Rössle-Strasse 10, Berlin-Buch 13125, Germany.

Nucleic Acids Res ; 42(21): 12995-3011, 2014 Dec 01.

Article in En | MEDLINE | ID: mdl-25389269

Subject(s)

DNA-Binding Proteins/metabolism; RNA-Binding Proteins/metabolism; Sequence Analysis, DNA/methods; Sequence Analysis, RNA/methods; Animals; Binding Sites; Chromatin Immunoprecipitation; Embryonic Stem Cells/metabolism; Humans; Markov Chains; Mice; Nucleotide Motifs; Transcription Factors/metabolism

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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: RNA-Binding Proteins / Sequence Analysis, RNA / Sequence Analysis, DNA / DNA-Binding Proteins Type of study: Health_economic_evaluation / Prognostic_studies Limits: Animals / Humans Language: En Journal: Nucleic Acids Res Year: 2014 Document type: Article Affiliation country: Germany Country of publication: United kingdom

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