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BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types.
Howe, E A; de Souza, A; Lahr, D L; Chatwin, S; Montgomery, P; Alexander, B R; Nguyen, D-T; Cruz, Y; Stonich, D A; Walzer, G; Rose, J T; Picard, S C; Liu, Z; Rose, J N; Xiang, X; Asiedu, J; Durkin, D; Levine, J; Yang, J J; Schürer, S C; Braisted, J C; Southall, N; Southern, M R; Chung, T D Y; Brudz, S; Tanega, C; Schreiber, S L; Bittker, J A; Guha, R; Clemons, P A.
Affiliation
  • Howe EA; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • de Souza A; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA Andrea.desouza@sloan.mit.edu.
  • Lahr DL; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Chatwin S; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Montgomery P; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Alexander BR; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Nguyen DT; National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Cruz Y; The Translational Research Institute, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, USA.
  • Stonich DA; Conrad Prebys Center for Chemical Genomics, Sanford|Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037, USA.
  • Walzer G; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Rose JT; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Picard SC; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Liu Z; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Rose JN; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Xiang X; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Asiedu J; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Durkin D; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Levine J; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Yang JJ; University of New Mexico Center for Molecular Discovery, University of New Mexico Health Sciences Center, 2500 Marble Avenue NE, Albuquerque, NM 87131, USA.
  • Schürer SC; Center for Computational Science, University of Miami, 1320 S. Dixie Highway, Gables One Tower, Coral Gables, FL 33146, USA.
  • Braisted JC; National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Southall N; National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Southern MR; The Translational Research Institute, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, USA.
  • Chung TD; Conrad Prebys Center for Chemical Genomics, Sanford|Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037, USA.
  • Brudz S; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Tanega C; National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), 9800 Medical Center Drive, Rockville, MD 20850, USA.
  • Schreiber SL; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Bittker JA; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA.
  • Guha R; National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), 9800 Medical Center Drive, Rockville, MD 20850, USA guhar@mail.nih.gov.
  • Clemons PA; Center for the Science of Therapeutics, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA pclemons@broadinstitute.org.
Nucleic Acids Res ; 43(Database issue): D1163-70, 2015 Jan.
Article in En | MEDLINE | ID: mdl-25477388
BARD, the BioAssay Research Database (https://bard.nih.gov/) is a public database and suite of tools developed to provide access to bioassay data produced by the NIH Molecular Libraries Program (MLP). Data from 631 MLP projects were migrated to a new structured vocabulary designed to capture bioassay data in a formalized manner, with particular emphasis placed on the description of assay protocols. New data can be submitted to BARD with a user-friendly set of tools that assist in the creation of appropriately formatted datasets and assay definitions. Data published through the BARD application program interface (API) can be accessed by researchers using web-based query tools or a desktop client. Third-party developers wishing to create new tools can use the API to produce stand-alone tools or new plug-ins that can be integrated into BARD. The entire BARD suite of tools therefore supports three classes of researcher: those who wish to publish data, those who wish to mine data for testable hypotheses, and those in the developer community who wish to build tools that leverage this carefully curated chemical biology resource.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Biological Assay / Databases, Factual / High-Throughput Screening Assays Language: En Journal: Nucleic Acids Res Year: 2015 Document type: Article Affiliation country: United States Country of publication: United kingdom
Fulltext
Add to My VHL
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PubMed Links
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Biological Assay / Databases, Factual / High-Throughput Screening Assays Language: En Journal: Nucleic Acids Res Year: 2015 Document type: Article Affiliation country: United States Country of publication: United kingdom