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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India.
Mukherjee, Supratim; Lapidus, Alla; Shapiro, Nicole; Cheng, Jan-Fang; Han, James; Reddy, Tbk; Huntemann, Marcel; Ivanova, Natalia; Mikhailova, Natalia; Chen, Amy; Palaniappan, Krishna; Spring, Stefan; Göker, Markus; Markowitz, Victor; Woyke, Tanja; Tindall, Brian J; Klenk, Hans-Peter; Kyrpides, Nikos C; Pati, Amrita.
Affiliation
  • Mukherjee S; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Lapidus A; T. Dobzhansky Center for Genome Bionformatics, St. Petersburg State University, St. Petersburg, Russia ; Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia.
  • Shapiro N; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Cheng JF; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Han J; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Reddy T; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Huntemann M; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Ivanova N; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Mikhailova N; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Chen A; Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Palaniappan K; Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Spring S; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
  • Göker M; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
  • Markowitz V; Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Woyke T; DOE Joint Genome Institute, Walnut Creek, California, USA.
  • Tindall BJ; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
  • Klenk HP; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
  • Kyrpides NC; DOE Joint Genome Institute, Walnut Creek, California, USA ; King Abdulaziz University, Jeddah, Saudi Arabia.
  • Pati A; DOE Joint Genome Institute, Walnut Creek, California, USA.
Stand Genomic Sci ; 10: 8, 2015.
Article in En | MEDLINE | ID: mdl-26203325
Pontibacter roseus is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of the same genus have been found in different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy water. Here we describe the features of Pontibacter roseus strain SRC-1(T) along with its complete genome sequence and annotation from a culture of DSM 17521(T). The 4,581,480 bp long draft genome consists of 12 scaffolds with 4,003 protein-coding and 50 RNA genes and is a part of Genomic Encyclopedia of Type Strains: KMG-I project.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Stand Genomic Sci Year: 2015 Document type: Article Affiliation country: United States Country of publication: United kingdom
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Stand Genomic Sci Year: 2015 Document type: Article Affiliation country: United States Country of publication: United kingdom