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High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176.
De Meyer, Sofie E; Tian, Rui; Seshadri, Rekha; Reddy, Tbk; Markowitz, Victor; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Kyrpides, Nikos; Yates, Ron; Howieson, John; Reeve, Wayne.
Affiliation
  • De Meyer SE; Centre for Rhizobium Studies, Murdoch University, Murdoch, WA Australia.
  • Tian R; Centre for Rhizobium Studies, Murdoch University, Murdoch, WA Australia.
  • Seshadri R; DOE Joint Genome Institute, Walnut Creek, CA USA.
  • Reddy T; DOE Joint Genome Institute, Walnut Creek, CA USA.
  • Markowitz V; Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA USA.
  • Ivanova N; DOE Joint Genome Institute, Walnut Creek, CA USA.
  • Pati A; DOE Joint Genome Institute, Walnut Creek, CA USA.
  • Woyke T; DOE Joint Genome Institute, Walnut Creek, CA USA.
  • Kyrpides N; DOE Joint Genome Institute, Walnut Creek, CA USA ; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
  • Yates R; Centre for Rhizobium Studies, Murdoch University, Murdoch, WA Australia ; Department of Agriculture and Food, Western Australia, Australia.
  • Howieson J; Centre for Rhizobium Studies, Murdoch University, Murdoch, WA Australia.
  • Reeve W; Centre for Rhizobium Studies, Murdoch University, Murdoch, WA Australia.
Stand Genomic Sci ; 10: 79, 2015.
Article in En | MEDLINE | ID: mdl-26478785
ABSTRACT
Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N2-fixing root nodule of Lebeckia ambigua collected in Nieuwoudtville, Western Cape of South Africa, in October 2007. This plant persists in infertile, acidic and deep sandy soils, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. Here we describe the features of Burkholderia sp. strain WSM4176, which represents a potential inoculant quality strain for L. ambigua, together with sequence and annotation. The 9,065,247 bp high-quality-draft genome is arranged in 13 scaffolds of 65 contigs, contains 8369 protein-coding genes and 128 RNA-only encoding genes, and is part of the GEBA-RNB project proposal (Project ID 882).
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Stand Genomic Sci Year: 2015 Document type: Article

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Stand Genomic Sci Year: 2015 Document type: Article