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Circular piecewise regression with applications to cell-cycle data.
Rueda, Cristina; Fernández, Miguel A; Barragán, Sandra; Mardia, Kanti V; Peddada, Shyamal D.
Affiliation
  • Rueda C; Departamento de Estadística e I.O., Universidad de Valladolid, 47011 Valladolid, Spain.
  • Fernández MA; Departamento de Estadística e I.O., Universidad de Valladolid, 47011 Valladolid, Spain.
  • Barragán S; Departamento de Estadística e I.O., Universidad de Valladolid, 47011 Valladolid, Spain.
  • Mardia KV; Department of Statistics, University of Oxford, Oxford, U.K., and Department of Statistics, University of Leeds, Leeds, U.K.
  • Peddada SD; Biostatistics and Computational Biology Branch NIEHS (NIH), Research Triangle Park, NC, U.S.A.
Biometrics ; 72(4): 1266-1274, 2016 12.
Article in En | MEDLINE | ID: mdl-26991351
Applications of circular regression models appear in many different fields such as evolutionary psychology, motor behavior, biology, and, in particular, in the analysis of gene expressions in oscillatory systems. Specifically, for the gene expression problem, a researcher may be interested in modeling the relationship among the phases of cell-cycle genes in two species with differing periods. This challenging problem reduces to the problem of constructing a piecewise circular regression model and, with this objective in mind, we propose a flexible circular regression model which allows different parameter values depending on sectors along the circle. We give a detailed interpretation of the parameters in the model and provide maximum likelihood estimators. We also provide a model selection procedure based on the concept of generalized degrees of freedom. The model is then applied to the analysis of two different cell-cycle data sets and through these examples we highlight the power of our new methodology.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Biological Clocks / Regression Analysis / Models, Statistical Type of study: Diagnostic_studies / Risk_factors_studies Language: En Journal: Biometrics Year: 2016 Document type: Article Affiliation country: Spain Country of publication: United States

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Biological Clocks / Regression Analysis / Models, Statistical Type of study: Diagnostic_studies / Risk_factors_studies Language: En Journal: Biometrics Year: 2016 Document type: Article Affiliation country: Spain Country of publication: United States