OpenSegSPIM: a user-friendly segmentation tool for SPIM data.
Bioinformatics
; 32(13): 2075-7, 2016 07 01.
Article
in En
| MEDLINE
| ID: mdl-27153681
ABSTRACT
UNLABELLED OpenSegSPIM is an open access and user friendly 3D automatic quantitative analysis tool for Single Plane Illumination Microscopy data. The software is designed to extract, in a user-friendly way, quantitative relevant information from SPIM image stacks, such as the number of nuclei or cells. It provides quantitative measurement (volume, sphericity, distance, intensity) on Light Sheet Fluorescent Microscopy images. AVAILABILITY AND IMPLEMENTATION freely available from http//www.opensegspim.weebly.com Source code and binaries under BSD License. CONTACT lgole@imcb.a-star.edu.sg or wmyu@imcb.a-star.edu.sg or sohail.ahmed@imb.a-star.edu.sg SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Software
/
Image Interpretation, Computer-Assisted
/
Microscopy
Limits:
Animals
/
Humans
Language:
En
Journal:
Bioinformatics
Journal subject:
INFORMATICA MEDICA
Year:
2016
Document type:
Article